Wall clock time and date at job start Tue Mar 31 2020 02:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09003 * 109.46441 * 2 1 4 4 N 1.46850 * 109.46220 * 240.02744 * 2 1 3 5 5 C 1.46841 * 111.19745 * 178.25405 * 4 2 1 6 6 C 1.53036 * 109.52967 * 61.73812 * 5 4 2 7 7 C 1.53122 * 109.27577 * 300.82283 * 6 5 4 8 8 C 1.53036 * 109.45546 * 119.97673 * 2 1 3 9 9 H 1.09004 * 109.50308 * 299.12775 * 8 2 1 10 10 C 1.50698 * 109.50425 * 59.24847 * 8 2 1 11 11 O 1.21281 * 120.00121 * 359.97438 * 10 8 2 12 12 N 1.34774 * 119.99764 * 180.02562 * 10 8 2 13 13 C 1.46501 * 119.99872 * 180.02562 * 12 10 8 14 14 H 1.09005 * 109.41332 * 324.99974 * 13 12 10 15 15 C 1.52954 * 109.41574 * 84.85432 * 13 12 10 16 16 C 1.53246 * 109.40087 * 183.77581 * 15 13 12 17 17 C 1.51265 * 108.48288 * 305.26896 * 16 15 13 18 18 C 1.37876 * 120.85259 * 231.36535 * 17 16 15 19 19 N 1.31525 * 119.99917 * 348.88119 * 18 17 16 20 20 Si 1.86805 * 120.00514 * 168.87821 * 18 17 16 21 21 H 1.48504 * 109.46789 * 354.66286 * 20 18 17 22 22 H 1.48494 * 109.46812 * 114.65836 * 20 18 17 23 23 H 1.48500 * 109.47163 * 234.66124 * 20 18 17 24 24 C 1.51272 * 118.30067 * 51.38739 * 17 16 15 25 25 C 1.52958 * 109.41541 * 205.14373 * 13 12 10 26 26 H 1.09000 * 109.47399 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47071 * 299.99627 * 1 2 3 28 28 H 1.09003 * 109.47798 * 59.99754 * 1 2 3 29 29 H 1.00900 * 110.99776 * 302.34341 * 4 2 1 30 30 H 1.09000 * 109.46432 * 181.75517 * 5 4 2 31 31 H 1.08997 * 109.46489 * 301.72220 * 5 4 2 32 32 H 1.09004 * 109.50279 * 60.75859 * 6 5 4 33 33 H 1.09001 * 109.50765 * 180.83775 * 6 5 4 34 34 H 1.09003 * 109.52001 * 177.55532 * 7 6 5 35 35 H 1.08993 * 109.51911 * 297.67927 * 7 6 5 36 36 H 0.96996 * 120.00691 * 359.97438 * 12 10 8 37 37 H 1.09001 * 109.48635 * 303.68614 * 15 13 12 38 38 H 1.08996 * 109.48516 * 63.72942 * 15 13 12 39 39 H 1.08996 * 109.61858 * 185.59196 * 16 15 13 40 40 H 1.09004 * 109.84328 * 65.07695 * 16 15 13 41 41 H 0.96992 * 119.99997 * 179.97438 * 19 18 17 42 42 H 1.09000 * 109.62516 * 188.94162 * 24 17 16 43 43 H 1.08991 * 109.78607 * 68.46133 * 24 17 16 44 44 H 1.09000 * 109.47611 * 296.26970 * 25 13 12 45 45 H 1.08997 * 109.48743 * 56.30938 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 7 2.0192 -0.6917 -1.1994 5 6 3.4863 -0.6779 -1.2590 6 6 4.0545 -1.4191 -0.0466 7 6 3.5707 -0.7363 1.2357 8 6 2.0396 -0.7210 1.2500 9 1 1.6892 -0.1982 2.1399 10 6 1.5224 -2.1364 1.2605 11 8 0.8150 -2.5303 0.3575 12 7 1.8450 -2.9641 2.2740 13 6 1.3426 -4.3403 2.2840 14 1 0.3407 -4.3634 1.8551 15 6 2.2717 -5.2268 1.4531 16 6 1.6958 -6.6453 1.3856 17 6 1.4651 -7.1370 2.7973 18 6 1.9583 -8.3563 3.2109 19 7 2.4447 -9.2022 2.3291 20 14 1.9359 -8.8069 5.0237 21 1 1.4626 -7.6440 5.8169 22 1 1.0207 -9.9567 5.2365 23 1 3.3065 -9.1779 5.4585 24 6 0.6790 -6.2569 3.7438 25 6 1.2908 -4.8522 3.7244 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3635 0.5139 -0.8899 29 1 1.6645 -1.6353 -1.2426 30 1 3.8174 -1.1701 -2.1734 31 1 3.8404 0.3529 -1.2530 32 1 3.7121 -2.4539 -0.0594 33 1 5.1437 -1.3958 -0.0834 34 1 3.9375 -1.2867 2.1021 35 1 3.9465 0.2863 1.2678 36 1 2.4104 -2.6491 2.9964 37 1 2.3557 -4.8212 0.4449 38 1 3.2577 -5.2554 1.9169 39 1 2.4022 -7.3034 0.8796 40 1 0.7508 -6.6355 0.8423 41 1 2.7920 -10.0598 2.6200 42 1 0.7321 -6.6654 4.7529 43 1 -0.3616 -6.2075 3.4232 44 1 2.3005 -4.8898 4.1333 45 1 0.6791 -4.1809 4.3271 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220094668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:24 Heat of formation + Delta-G solvation = -61.780990 kcal Electronic energy + Delta-G solvation = -23546.114264 eV Core-core repulsion = 20368.912602 eV Total energy + Delta-G solvation = -3177.201661 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.68201 -37.97506 -36.45067 -33.96506 -32.52358 -32.19007 -31.15812 -29.66757 -27.67568 -26.75925 -24.02846 -22.46900 -21.74495 -21.55343 -21.08103 -19.79340 -19.15560 -16.70260 -16.07829 -15.81469 -15.63379 -15.07998 -14.88755 -14.48588 -14.38555 -13.76821 -13.46811 -13.18719 -12.92382 -12.72367 -12.29783 -12.24886 -12.17801 -12.05502 -11.77017 -11.60673 -11.38786 -11.21961 -11.08372 -10.91970 -10.83264 -10.75466 -10.50879 -10.25813 -9.96123 -9.42898 -9.40675 -9.01983 -8.85927 -8.44375 -8.31622 -8.22939 -6.13726 -4.03039 2.86456 3.22706 3.31157 3.33118 3.51090 4.30088 4.34861 4.59601 4.68525 4.76094 4.95572 5.09916 5.14460 5.28395 5.36600 5.43350 5.61089 5.65116 5.69009 5.70187 5.80587 5.84553 5.86884 5.95904 6.11700 6.13394 6.18632 6.41092 6.44126 6.55432 6.68327 6.73789 6.79002 7.02291 7.06575 7.16248 7.21448 7.37614 7.58869 7.62509 7.74924 7.81197 7.88525 8.36657 8.55330 8.94112 9.51563 10.95796 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.030419 B = 0.004375 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.252174 B = 6399.015651 C = 6589.642077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.110 3.890 3 H 0.078 0.922 4 N -0.685 5.685 5 C 0.057 3.943 6 C -0.164 4.164 7 C -0.108 4.108 8 C -0.149 4.149 9 H 0.095 0.905 10 C 0.518 3.482 11 O -0.539 6.539 12 N -0.722 5.722 13 C 0.154 3.846 14 H 0.078 0.922 15 C -0.111 4.111 16 C 0.014 3.986 17 C -0.490 4.490 18 C 0.077 3.923 19 N -0.885 5.885 20 Si 0.878 3.122 21 H -0.256 1.256 22 H -0.283 1.283 23 H -0.286 1.286 24 C -0.021 4.021 25 C -0.113 4.113 26 H 0.087 0.913 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.361 0.639 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.392 0.608 37 H 0.033 0.967 38 H 0.046 0.954 39 H 0.054 0.946 40 H 0.006 0.994 41 H 0.264 0.736 42 H 0.043 0.957 43 H 0.019 0.981 44 H 0.054 0.946 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.307 17.781 -0.257 17.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.001 4.001 3 H 0.096 0.904 4 N -0.319 5.319 5 C -0.073 4.073 6 C -0.203 4.203 7 C -0.146 4.146 8 C -0.172 4.172 9 H 0.113 0.887 10 C 0.304 3.696 11 O -0.417 6.417 12 N -0.370 5.370 13 C 0.051 3.949 14 H 0.096 0.904 15 C -0.150 4.150 16 C -0.024 4.024 17 C -0.508 4.508 18 C -0.126 4.126 19 N -0.522 5.522 20 Si 0.706 3.294 21 H -0.181 1.181 22 H -0.209 1.209 23 H -0.212 1.212 24 C -0.059 4.059 25 C -0.152 4.152 26 H 0.106 0.894 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.186 0.814 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.225 0.775 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.025 0.975 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.037 0.963 44 H 0.072 0.928 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.785 17.818 -1.352 17.958 hybrid contribution 0.772 -0.821 2.190 2.463 sum 2.557 16.997 0.838 17.209 Atomic orbital electron populations 1.22083 0.94028 1.04791 1.00923 1.21264 0.95887 0.96676 0.86267 0.90380 1.60752 1.07682 1.25399 1.38114 1.21984 0.88375 1.00022 0.96886 1.22310 1.01264 1.00649 0.96063 1.21522 0.92940 1.01501 0.98595 1.22204 0.97394 0.94912 1.02675 0.88668 1.20424 0.80053 0.86994 0.82135 1.90545 1.38055 1.77027 1.36105 1.46467 1.52120 1.13815 1.24627 1.21057 0.98395 0.78030 0.97431 0.90379 1.21945 0.98168 0.98336 0.96577 1.19317 0.96418 0.90579 0.96101 1.20026 1.33292 1.01451 0.96078 1.24857 0.94946 0.95461 0.97351 1.69909 1.40880 1.07943 1.33470 0.86763 0.77627 0.78515 0.86487 1.18147 1.20892 1.21249 1.19903 0.96270 0.91769 0.97963 1.21870 1.00576 0.99154 0.93591 0.89398 0.93215 0.92346 0.81429 0.90897 0.91403 0.91462 0.91285 0.91500 0.91023 0.77534 0.94848 0.93495 0.92786 0.97523 0.92649 0.93854 0.96276 0.92757 0.94568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.15 37.15 0.34 -1.62 16 2 C 0.11 1.28 2.75 -67.73 -0.19 1.10 16 3 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 4 N -0.68 -8.92 6.46 -106.77 -0.69 -9.61 16 5 C 0.06 0.64 6.55 -3.84 -0.03 0.61 16 6 C -0.16 -1.82 5.82 -26.65 -0.16 -1.98 16 7 C -0.11 -1.06 5.43 -26.61 -0.14 -1.21 16 8 C -0.15 -1.67 2.57 -91.69 -0.24 -1.90 16 9 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 10 C 0.52 7.71 5.49 -10.99 -0.06 7.65 16 11 O -0.54 -9.75 11.22 5.56 0.06 -9.69 16 12 N -0.72 -10.86 4.95 -53.85 -0.27 -11.12 16 13 C 0.15 2.91 2.35 -67.98 -0.16 2.75 16 14 H 0.08 1.66 7.57 -51.93 -0.39 1.27 16 15 C -0.11 -2.38 5.50 -26.63 -0.15 -2.53 16 16 C 0.01 0.35 5.93 -27.48 -0.16 0.19 16 17 C -0.49 -12.70 5.48 -98.92 -0.54 -13.24 16 18 C 0.08 2.07 5.44 -17.82 -0.10 1.97 16 19 N -0.88 -25.36 12.82 55.43 0.71 -24.65 16 20 Si 0.88 20.33 27.95 -169.99 -4.75 15.57 16 21 H -0.26 -5.60 5.58 56.52 0.32 -5.29 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 C -0.02 -0.48 5.65 -27.48 -0.16 -0.63 16 25 C -0.11 -2.16 5.40 -26.63 -0.14 -2.31 16 26 H 0.09 1.32 5.45 -51.93 -0.28 1.04 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.36 5.58 6.23 -39.29 -0.24 5.34 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.94 7.35 -51.93 -0.38 0.56 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.63 7.52 -51.93 -0.39 0.24 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.39 4.88 8.01 -40.82 -0.33 4.56 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 1.49 7.19 -51.93 -0.37 1.12 16 40 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.04 0.97 4.36 -51.93 -0.23 0.74 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 332.71 15.07 5.01 5.01 Total: -1.00 -28.48 332.71 -9.55 -38.04 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -7.76 Total: 7.61 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -1.87 Total: -11.16 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: -0.25 Total: -45.38 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.06 Total: -9.69 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.75 Total: 15.57 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.48 -9.55 -38.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220094668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.745 kcal (2) G-P(sol) polarization free energy of solvation -28.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds