Wall clock time and date at job start Tue Mar 31 2020 02:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09003 * 109.46441 * 2 1 4 4 N 1.46850 * 109.46220 * 240.02744 * 2 1 3 5 5 C 1.46841 * 111.19745 * 178.25405 * 4 2 1 6 6 C 1.53036 * 109.52967 * 61.73812 * 5 4 2 7 7 C 1.53122 * 109.27577 * 300.82283 * 6 5 4 8 8 C 1.53036 * 109.45546 * 119.97673 * 2 1 3 9 9 H 1.09004 * 109.50308 * 299.12775 * 8 2 1 10 10 C 1.50698 * 109.50425 * 59.24847 * 8 2 1 11 11 O 1.21281 * 120.00121 * 359.97438 * 10 8 2 12 12 N 1.34774 * 119.99764 * 180.02562 * 10 8 2 13 13 C 1.46501 * 119.99872 * 180.02562 * 12 10 8 14 14 H 1.09005 * 109.41332 * 324.99974 * 13 12 10 15 15 C 1.52954 * 109.41574 * 84.85432 * 13 12 10 16 16 C 1.53246 * 109.40087 * 183.77581 * 15 13 12 17 17 C 1.51265 * 108.48288 * 305.26896 * 16 15 13 18 18 C 1.37876 * 120.85259 * 231.36535 * 17 16 15 19 19 N 1.31525 * 119.99917 * 348.88119 * 18 17 16 20 20 Si 1.86805 * 120.00514 * 168.87821 * 18 17 16 21 21 H 1.48504 * 109.46789 * 354.66286 * 20 18 17 22 22 H 1.48494 * 109.46812 * 114.65836 * 20 18 17 23 23 H 1.48500 * 109.47163 * 234.66124 * 20 18 17 24 24 C 1.51272 * 118.30067 * 51.38739 * 17 16 15 25 25 C 1.52958 * 109.41541 * 205.14373 * 13 12 10 26 26 H 1.09000 * 109.47399 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47071 * 299.99627 * 1 2 3 28 28 H 1.09003 * 109.47798 * 59.99754 * 1 2 3 29 29 H 1.00900 * 110.99776 * 302.34341 * 4 2 1 30 30 H 1.09000 * 109.46432 * 181.75517 * 5 4 2 31 31 H 1.08997 * 109.46489 * 301.72220 * 5 4 2 32 32 H 1.09004 * 109.50279 * 60.75859 * 6 5 4 33 33 H 1.09001 * 109.50765 * 180.83775 * 6 5 4 34 34 H 1.09003 * 109.52001 * 177.55532 * 7 6 5 35 35 H 1.08993 * 109.51911 * 297.67927 * 7 6 5 36 36 H 0.96996 * 120.00691 * 359.97438 * 12 10 8 37 37 H 1.09001 * 109.48635 * 303.68614 * 15 13 12 38 38 H 1.08996 * 109.48516 * 63.72942 * 15 13 12 39 39 H 1.08996 * 109.61858 * 185.59196 * 16 15 13 40 40 H 1.09004 * 109.84328 * 65.07695 * 16 15 13 41 41 H 0.96992 * 119.99997 * 179.97438 * 19 18 17 42 42 H 1.09000 * 109.62516 * 188.94162 * 24 17 16 43 43 H 1.08991 * 109.78607 * 68.46133 * 24 17 16 44 44 H 1.09000 * 109.47611 * 296.26970 * 25 13 12 45 45 H 1.08997 * 109.48743 * 56.30938 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 7 2.0192 -0.6917 -1.1994 5 6 3.4863 -0.6779 -1.2590 6 6 4.0545 -1.4191 -0.0466 7 6 3.5707 -0.7363 1.2357 8 6 2.0396 -0.7210 1.2500 9 1 1.6892 -0.1982 2.1399 10 6 1.5224 -2.1364 1.2605 11 8 0.8150 -2.5303 0.3575 12 7 1.8450 -2.9641 2.2740 13 6 1.3426 -4.3403 2.2840 14 1 0.3407 -4.3634 1.8551 15 6 2.2717 -5.2268 1.4531 16 6 1.6958 -6.6453 1.3856 17 6 1.4651 -7.1370 2.7973 18 6 1.9583 -8.3563 3.2109 19 7 2.4447 -9.2022 2.3291 20 14 1.9359 -8.8069 5.0237 21 1 1.4626 -7.6440 5.8169 22 1 1.0207 -9.9567 5.2365 23 1 3.3065 -9.1779 5.4585 24 6 0.6790 -6.2569 3.7438 25 6 1.2908 -4.8522 3.7244 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3635 0.5139 -0.8899 29 1 1.6645 -1.6353 -1.2426 30 1 3.8174 -1.1701 -2.1734 31 1 3.8404 0.3529 -1.2530 32 1 3.7121 -2.4539 -0.0594 33 1 5.1437 -1.3958 -0.0834 34 1 3.9375 -1.2867 2.1021 35 1 3.9465 0.2863 1.2678 36 1 2.4104 -2.6491 2.9964 37 1 2.3557 -4.8212 0.4449 38 1 3.2577 -5.2554 1.9169 39 1 2.4022 -7.3034 0.8796 40 1 0.7508 -6.6355 0.8423 41 1 2.7920 -10.0598 2.6200 42 1 0.7321 -6.6654 4.7529 43 1 -0.3616 -6.2075 3.4232 44 1 2.3005 -4.8898 4.1333 45 1 0.6791 -4.1809 4.3271 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220094668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:24 Heat of formation + Delta-G solvation = -80.956479 kcal Electronic energy + Delta-G solvation = -23546.945775 eV Core-core repulsion = 20368.912602 eV Total energy + Delta-G solvation = -3178.033173 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.77789 -39.30441 -37.87245 -35.49115 -33.81395 -33.32381 -32.47052 -31.49258 -29.21443 -27.91309 -25.06641 -23.95238 -23.49585 -22.52427 -22.33842 -21.33475 -20.47391 -18.22228 -17.50501 -17.16252 -16.59046 -16.40355 -16.13058 -15.87393 -15.53977 -15.07675 -14.78201 -14.66873 -14.34819 -14.19675 -14.00638 -13.67929 -13.35918 -13.11245 -13.01774 -12.83038 -12.75889 -12.66843 -12.53618 -12.32698 -12.05575 -11.92766 -11.83167 -11.74924 -11.37281 -11.25181 -11.01116 -10.72287 -10.48929 -10.36415 -9.83207 -9.19493 -8.18452 -6.12791 1.40228 1.43167 1.52668 1.71404 2.29751 2.41718 3.09188 3.38830 3.63892 3.83446 3.90439 3.99241 4.11007 4.19879 4.23507 4.41827 4.48446 4.52637 4.58330 4.68514 4.79144 4.82413 4.85927 4.88179 4.96921 4.97582 5.00842 5.03076 5.12407 5.14612 5.18653 5.24956 5.27250 5.31972 5.50649 5.54479 5.56100 5.71863 5.76461 5.79415 6.28864 6.32460 6.49110 6.69014 6.92447 7.40364 7.45218 8.93167 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.030419 B = 0.004375 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.252174 B = 6399.015651 C = 6589.642077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.107 3.893 3 H 0.103 0.897 4 N -0.698 5.698 5 C 0.057 3.943 6 C -0.162 4.162 7 C -0.104 4.104 8 C -0.138 4.138 9 H 0.125 0.875 10 C 0.513 3.487 11 O -0.574 6.574 12 N -0.713 5.713 13 C 0.168 3.832 14 H 0.052 0.948 15 C -0.095 4.095 16 C 0.011 3.989 17 C -0.501 4.501 18 C 0.018 3.982 19 N -0.933 5.933 20 Si 0.940 3.060 21 H -0.227 1.227 22 H -0.287 1.287 23 H -0.287 1.287 24 C -0.024 4.024 25 C -0.105 4.105 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.343 0.657 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.029 0.971 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.409 0.591 37 H 0.024 0.976 38 H 0.047 0.953 39 H 0.018 0.982 40 H -0.015 1.015 41 H 0.262 0.738 42 H 0.052 0.948 43 H 0.015 0.985 44 H 0.064 0.936 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.977 21.062 2.356 21.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.003 4.003 3 H 0.121 0.879 4 N -0.331 5.331 5 C -0.073 4.073 6 C -0.202 4.202 7 C -0.141 4.141 8 C -0.161 4.161 9 H 0.143 0.857 10 C 0.301 3.699 11 O -0.454 6.454 12 N -0.363 5.363 13 C 0.064 3.936 14 H 0.070 0.930 15 C -0.134 4.134 16 C -0.027 4.027 17 C -0.520 4.520 18 C -0.180 4.180 19 N -0.573 5.573 20 Si 0.766 3.234 21 H -0.151 1.151 22 H -0.213 1.213 23 H -0.214 1.214 24 C -0.062 4.062 25 C -0.143 4.143 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.165 0.835 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.048 0.952 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.120 0.880 36 H 0.245 0.755 37 H 0.043 0.957 38 H 0.066 0.934 39 H 0.037 0.963 40 H 0.004 0.996 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.033 0.967 44 H 0.082 0.918 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.466 21.159 1.283 21.341 hybrid contribution 0.521 -1.840 1.209 2.263 sum 2.987 19.319 2.493 19.706 Atomic orbital electron populations 1.22026 0.94795 1.02843 1.01836 1.21400 0.95364 0.97660 0.85921 0.87869 1.60789 1.08841 1.24210 1.39251 1.22053 0.87329 1.01176 0.96741 1.22278 1.02132 0.98625 0.97115 1.21572 0.91554 1.03169 0.97854 1.22217 0.98359 0.91837 1.03692 0.85747 1.21210 0.79169 0.88430 0.81070 1.90561 1.39534 1.77995 1.37342 1.46180 1.52472 1.12056 1.25600 1.20563 0.96312 0.79840 0.96927 0.92950 1.21701 0.98479 0.96376 0.96892 1.19263 0.94649 0.92643 0.96134 1.20602 1.32885 1.01931 0.96586 1.25751 0.94994 0.95490 1.01748 1.70069 1.42899 1.08555 1.35751 0.85777 0.77368 0.78873 0.81389 1.15103 1.21301 1.21383 1.19912 0.95648 0.93407 0.97266 1.21730 1.01454 0.97429 0.93689 0.92649 0.91307 0.92451 0.83490 0.91552 0.89212 0.95173 0.89823 0.90643 0.88046 0.75459 0.95725 0.93436 0.96322 0.99635 0.92849 0.92988 0.96682 0.91758 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 9.15 71.98 0.66 -2.95 16 2 C 0.11 2.22 2.75 44.93 0.12 2.34 16 3 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 4 N -0.70 -17.50 6.46 -491.71 -3.17 -20.68 16 5 C 0.06 1.16 6.55 86.33 0.57 1.72 16 6 C -0.16 -3.30 5.82 30.65 0.18 -3.12 16 7 C -0.10 -1.64 5.43 30.68 0.17 -1.47 16 8 C -0.14 -2.64 2.57 -11.49 -0.03 -2.67 16 9 H 0.12 1.73 8.14 -2.39 -0.02 1.72 16 10 C 0.51 14.55 5.49 87.66 0.48 15.03 16 11 O -0.57 -21.09 11.22 -3.03 -0.03 -21.12 16 12 N -0.71 -19.96 4.95 -442.67 -2.19 -22.15 16 13 C 0.17 6.24 2.35 44.96 0.11 6.35 16 14 H 0.05 2.24 7.57 -2.38 -0.02 2.23 16 15 C -0.10 -4.18 5.50 30.66 0.17 -4.01 16 16 C 0.01 0.59 5.93 30.11 0.18 0.77 16 17 C -0.50 -26.36 5.48 -16.17 -0.09 -26.45 16 18 C 0.02 1.00 5.44 84.65 0.46 1.46 16 19 N -0.93 -55.61 12.82 21.45 0.28 -55.33 16 20 Si 0.94 41.47 27.95 68.60 1.92 43.39 16 21 H -0.23 -8.89 5.58 99.48 0.56 -8.33 16 22 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 24 C -0.02 -1.07 5.65 30.11 0.17 -0.90 16 25 C -0.10 -3.70 5.40 30.66 0.17 -3.54 16 26 H 0.05 1.66 5.45 -2.39 -0.01 1.65 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.34 10.85 6.23 -89.69 -0.56 10.29 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.03 0.83 7.35 -2.39 -0.02 0.81 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 1.10 7.52 -2.39 -0.02 1.08 16 35 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.41 8.70 8.01 -92.71 -0.74 7.96 16 37 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.02 1.08 7.19 -2.39 -0.02 1.06 16 40 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 41 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 42 H 0.05 2.16 4.36 -2.39 -0.01 2.15 16 43 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -65.72 332.71 -0.37 -66.09 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: -0.47 Total: 27.22 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: 3.31 Total: -17.42 kcal Atomic # 7 Polarization: -93.07 SS G_CDS: -5.09 Total: -98.16 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.03 Total: -21.12 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 1.92 Total: 43.39 kcal Total: -65.72 -0.37 -66.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220094668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.869 kcal (2) G-P(sol) polarization free energy of solvation -65.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds