Wall clock time and date at job start Tue Mar 31 2020 01:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 115.56077 * 2 1 4 4 C 1.52994 * 117.49668 * 145.68660 * 2 1 3 5 5 C 1.52998 * 117.49671 * 214.31035 * 2 1 3 6 6 H 1.09002 * 117.51937 * 359.97438 * 5 2 1 7 7 C 1.50696 * 117.49865 * 145.02545 * 5 2 1 8 8 O 1.21280 * 120.00364 * 0.02562 * 7 5 2 9 9 N 1.34774 * 120.00274 * 180.02562 * 7 5 2 10 10 C 1.46934 * 120.63137 * 359.97438 * 9 7 5 11 11 C 1.53184 * 108.77747 * 233.61040 * 10 9 7 12 12 C 1.53038 * 109.31246 * 305.36391 * 11 10 9 13 13 C 1.53042 * 109.53967 * 61.36666 * 12 11 10 14 14 H 1.08997 * 109.49730 * 58.58690 * 13 12 11 15 15 C 1.52998 * 109.49744 * 178.65198 * 13 12 11 16 16 N 1.46500 * 109.47489 * 294.93348 * 15 13 12 17 17 C 1.46500 * 119.99995 * 270.00533 * 16 15 13 18 18 C 1.36939 * 120.00055 * 89.99383 * 16 15 13 19 19 H 1.08002 * 119.99700 * 22.15391 * 18 16 15 20 20 C 1.38807 * 120.00185 * 202.14691 * 18 16 15 21 21 N 1.31621 * 119.99981 * 11.56762 * 20 18 16 22 22 Si 1.86799 * 120.00110 * 191.57257 * 20 18 16 23 23 H 1.48500 * 109.47139 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47505 * 120.00203 * 22 20 18 25 25 H 1.48504 * 109.46974 * 240.00062 * 22 20 18 26 26 C 1.46930 * 120.63430 * 179.97438 * 9 7 5 27 27 H 1.09003 * 109.47414 * 205.69135 * 1 2 3 28 28 H 1.08996 * 109.46974 * 325.69450 * 1 2 3 29 29 H 1.08997 * 109.46894 * 85.69121 * 1 2 3 30 30 H 1.09000 * 117.50114 * 0.02562 * 4 2 1 31 31 H 1.09003 * 117.52237 * 214.97063 * 4 2 1 32 32 H 1.08994 * 109.58687 * 113.82110 * 10 9 7 33 33 H 1.09002 * 109.58165 * 353.39966 * 10 9 7 34 34 H 1.08997 * 109.49791 * 185.41139 * 11 10 9 35 35 H 1.09006 * 109.49811 * 65.31238 * 11 10 9 36 36 H 1.08995 * 109.46086 * 301.34140 * 12 11 10 37 37 H 1.09003 * 109.45269 * 181.37969 * 12 11 10 38 38 H 1.09005 * 109.47087 * 54.93318 * 15 13 12 39 39 H 1.09004 * 109.47466 * 174.93318 * 15 13 12 40 40 H 1.09004 * 109.47401 * 94.21850 * 17 16 15 41 41 H 1.09000 * 109.46891 * 214.22127 * 17 16 15 42 42 H 1.08997 * 109.47111 * 334.22239 * 17 16 15 43 43 H 0.96998 * 120.00273 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.58495 * 6.59979 * 26 9 7 45 45 H 1.09005 * 109.58515 * 246.17974 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1209 0.7650 5 6 2.2364 -1.1210 -0.7650 6 1 1.6115 -1.8589 -1.2680 7 6 3.5292 -0.7812 -1.4607 8 8 3.9721 0.3462 -1.4007 9 7 4.1934 -1.7302 -2.1497 10 6 3.6699 -3.1007 -2.2311 11 6 4.7626 -4.0737 -1.7773 12 6 6.0284 -3.8343 -2.6035 13 6 6.5275 -2.4060 -2.3731 14 1 6.7288 -2.2576 -1.3122 15 6 7.8116 -2.1785 -3.1732 16 7 8.8713 -3.0461 -2.6532 17 6 9.7468 -2.5699 -1.5794 18 6 9.0434 -4.3022 -3.1706 19 1 8.6742 -4.5345 -4.1586 20 6 9.6923 -5.2770 -2.4252 21 7 9.9394 -5.0734 -1.1485 22 14 10.2151 -6.8775 -3.2341 23 1 9.8235 -6.8593 -4.6664 24 1 11.6883 -7.0293 -3.1251 25 1 9.5485 -8.0168 -2.5537 26 6 5.4548 -1.4140 -2.8337 27 1 -0.3634 -0.9261 0.4455 28 1 -0.3633 0.8489 0.5792 29 1 -0.3633 0.0772 -1.0247 30 1 1.6112 -1.8586 1.2680 31 1 3.1716 -0.8756 1.2684 32 1 3.3868 -3.3232 -3.2599 33 1 2.8003 -3.1988 -1.5813 34 1 4.4210 -5.0983 -1.9237 35 1 4.9806 -3.9095 -0.7220 36 1 5.8039 -3.9744 -3.6608 37 1 6.7997 -4.5419 -2.2992 38 1 7.6323 -2.4130 -4.2225 39 1 8.1174 -1.1363 -3.0810 40 1 9.3508 -2.8940 -0.6170 41 1 10.7472 -2.9801 -1.7175 42 1 9.7939 -1.4812 -1.6048 43 1 10.3925 -5.7547 -0.6276 44 1 5.7628 -0.3994 -2.5815 45 1 5.3171 -1.4990 -3.9117 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265393263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:11 Heat of formation + Delta-G solvation = 1.825634 kcal Electronic energy + Delta-G solvation = -22893.159672 eV Core-core repulsion = 19718.716201 eV Total energy + Delta-G solvation = -3174.443471 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.25945 -38.02228 -36.54317 -35.46232 -32.70502 -31.54954 -30.36122 -28.93681 -26.19338 -25.72574 -25.37577 -23.28589 -22.18842 -21.22674 -20.68614 -19.39345 -18.59434 -17.29985 -16.65362 -15.93929 -15.03571 -14.91475 -14.52452 -14.19999 -14.01792 -13.90210 -13.43868 -13.25114 -13.16908 -12.90638 -12.74520 -12.51693 -12.26371 -12.09232 -11.57921 -11.44535 -11.30105 -10.91901 -10.79054 -10.67128 -10.49313 -10.38972 -10.22669 -10.15287 -10.11681 -9.98802 -9.85254 -9.60380 -9.53772 -8.50786 -8.35960 -6.72082 -5.70122 -3.14665 2.57987 3.09353 3.36982 3.44986 3.46197 3.72261 4.41099 4.50910 4.61303 4.65536 4.90997 5.08538 5.12264 5.28405 5.29227 5.38673 5.46523 5.50605 5.51547 5.55998 5.58352 5.77474 5.82480 5.84546 5.88312 5.96810 6.06322 6.13891 6.19791 6.26692 6.33127 6.51473 6.69210 6.74254 6.79786 6.87378 7.14984 7.33511 7.43226 7.59654 7.76901 7.83377 8.32650 8.42072 9.26371 9.90181 10.39876 11.34468 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.029890 B = 0.003915 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.541396 B = 7149.717639 C = 7428.819059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.125 4.125 3 H 0.116 0.884 4 C -0.148 4.148 5 C -0.190 4.190 6 H 0.122 0.878 7 C 0.542 3.458 8 O -0.550 6.550 9 N -0.602 5.602 10 C 0.108 3.892 11 C -0.134 4.134 12 C -0.108 4.108 13 C -0.116 4.116 14 H 0.065 0.935 15 C 0.158 3.842 16 N -0.600 5.600 17 C 0.164 3.836 18 C -0.244 4.244 19 H 0.068 0.932 20 C 0.000 4.000 21 N -0.907 5.907 22 Si 0.900 3.100 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.115 3.885 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.100 0.900 38 H 0.044 0.956 39 H 0.037 0.963 40 H 0.026 0.974 41 H 0.044 0.956 42 H -0.005 1.005 43 H 0.250 0.750 44 H 0.085 0.915 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.112 5.273 0.747 17.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.144 4.144 3 H 0.134 0.866 4 C -0.185 4.185 5 C -0.211 4.211 6 H 0.140 0.860 7 C 0.330 3.670 8 O -0.428 6.428 9 N -0.333 5.333 10 C -0.015 4.015 11 C -0.172 4.172 12 C -0.145 4.145 13 C -0.138 4.138 14 H 0.083 0.917 15 C 0.030 3.970 16 N -0.322 5.322 17 C 0.019 3.981 18 C -0.374 4.374 19 H 0.086 0.914 20 C -0.198 4.198 21 N -0.553 5.553 22 Si 0.730 3.270 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.218 1.218 26 C -0.008 4.008 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.119 0.881 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.045 0.955 41 H 0.063 0.937 42 H 0.014 0.986 43 H 0.061 0.939 44 H 0.103 0.897 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.746 5.756 0.871 17.729 hybrid contribution 0.295 -1.228 -0.318 1.302 sum -16.451 4.528 0.553 17.072 Atomic orbital electron populations 1.21390 0.92377 1.02107 1.02054 1.22370 0.95025 0.95176 1.01801 0.86586 1.23088 1.03129 1.01371 0.90944 1.22324 0.98035 1.04865 0.95848 0.86014 1.19623 0.84656 0.84480 0.78269 1.90659 1.68863 1.21145 1.62131 1.48079 1.23869 1.10019 1.51380 1.21811 0.97029 0.81321 1.01299 1.21942 0.96279 0.97975 1.00988 1.21521 0.96557 0.98155 0.98273 1.22207 0.95622 0.94383 1.01602 0.91685 1.20790 0.87011 0.93465 0.95720 1.43950 1.32177 1.13693 1.42426 1.20784 0.94608 0.91375 0.91284 1.19187 1.33764 0.87001 0.97436 0.91439 1.24994 1.02061 0.97632 0.95139 1.70082 1.45684 1.34045 1.05473 0.86254 0.78180 0.83872 0.78684 1.20386 1.21746 1.21833 1.21804 0.82719 1.00600 0.95656 0.92409 0.91771 0.92055 0.87883 0.88239 0.91677 0.90323 0.91377 0.91911 0.93265 0.88144 0.93777 0.94430 0.95519 0.93723 0.98610 0.93915 0.89690 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 10.19 37.16 0.38 -0.55 16 2 C -0.13 -1.29 5.92 -90.62 -0.54 -1.83 16 3 H 0.12 1.40 7.67 -51.93 -0.40 1.00 16 4 C -0.15 -1.51 9.88 -26.73 -0.26 -1.77 16 5 C -0.19 -2.16 4.69 -91.77 -0.43 -2.59 16 6 H 0.12 1.13 6.82 -51.93 -0.35 0.78 16 7 C 0.54 8.34 7.48 -10.99 -0.08 8.25 16 8 O -0.55 -10.35 15.67 5.56 0.09 -10.27 16 9 N -0.60 -8.95 2.97 -172.77 -0.51 -9.47 16 10 C 0.11 1.34 6.30 -3.71 -0.02 1.31 16 11 C -0.13 -1.96 6.08 -26.62 -0.16 -2.12 16 12 C -0.11 -1.94 4.77 -26.69 -0.13 -2.07 16 13 C -0.12 -2.15 2.54 -90.50 -0.23 -2.38 16 14 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 15 C 0.16 3.21 5.22 -4.04 -0.02 3.19 16 16 N -0.60 -14.77 2.80 -181.12 -0.51 -15.28 16 17 C 0.16 4.09 9.01 59.85 0.54 4.63 16 18 C -0.24 -6.43 7.59 -15.06 -0.11 -6.55 16 19 H 0.07 1.76 7.85 -52.49 -0.41 1.34 16 20 C 0.00 -0.01 5.13 -17.43 -0.09 -0.10 16 21 N -0.91 -25.92 10.58 55.49 0.59 -25.33 16 22 Si 0.90 21.44 29.57 -169.99 -5.03 16.41 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 C 0.11 1.86 5.72 -3.71 -0.02 1.84 16 27 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.10 0.82 8.05 -51.93 -0.42 0.41 16 31 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.79 5.67 -51.93 -0.29 0.50 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.10 2.27 6.26 -51.93 -0.33 1.94 16 38 H 0.04 0.87 8.03 -51.93 -0.42 0.45 16 39 H 0.04 0.72 7.86 -51.93 -0.41 0.31 16 40 H 0.03 0.72 7.42 -51.93 -0.39 0.33 16 41 H 0.04 1.19 7.18 -51.93 -0.37 0.82 16 42 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 43 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.08 1.48 7.00 -51.93 -0.36 1.12 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 350.56 15.07 5.28 5.28 Total: -1.00 -30.40 350.56 -9.18 -39.58 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -7.91 Total: -0.20 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -1.18 Total: -0.73 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: -0.43 Total: -50.08 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.40 -9.18 -39.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265393263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.403 kcal (2) G-P(sol) polarization free energy of solvation -30.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds