Wall clock time and date at job start Tue Mar 31 2020 01:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 115.56077 * 2 1 4 4 C 1.52994 * 117.49668 * 145.68660 * 2 1 3 5 5 C 1.52998 * 117.49671 * 214.31035 * 2 1 3 6 6 H 1.09002 * 117.51937 * 359.97438 * 5 2 1 7 7 C 1.50696 * 117.49865 * 145.02545 * 5 2 1 8 8 O 1.21280 * 120.00364 * 0.02562 * 7 5 2 9 9 N 1.34774 * 120.00274 * 180.02562 * 7 5 2 10 10 C 1.46934 * 120.63137 * 359.97438 * 9 7 5 11 11 C 1.53184 * 108.77747 * 233.61040 * 10 9 7 12 12 C 1.53038 * 109.31246 * 305.36391 * 11 10 9 13 13 C 1.53042 * 109.53967 * 61.36666 * 12 11 10 14 14 H 1.08997 * 109.49730 * 58.58690 * 13 12 11 15 15 C 1.52998 * 109.49744 * 178.65198 * 13 12 11 16 16 N 1.46500 * 109.47489 * 294.93348 * 15 13 12 17 17 C 1.46500 * 119.99995 * 270.00533 * 16 15 13 18 18 C 1.36939 * 120.00055 * 89.99383 * 16 15 13 19 19 H 1.08002 * 119.99700 * 22.15391 * 18 16 15 20 20 C 1.38807 * 120.00185 * 202.14691 * 18 16 15 21 21 N 1.31621 * 119.99981 * 11.56762 * 20 18 16 22 22 Si 1.86799 * 120.00110 * 191.57257 * 20 18 16 23 23 H 1.48500 * 109.47139 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47505 * 120.00203 * 22 20 18 25 25 H 1.48504 * 109.46974 * 240.00062 * 22 20 18 26 26 C 1.46930 * 120.63430 * 179.97438 * 9 7 5 27 27 H 1.09003 * 109.47414 * 205.69135 * 1 2 3 28 28 H 1.08996 * 109.46974 * 325.69450 * 1 2 3 29 29 H 1.08997 * 109.46894 * 85.69121 * 1 2 3 30 30 H 1.09000 * 117.50114 * 0.02562 * 4 2 1 31 31 H 1.09003 * 117.52237 * 214.97063 * 4 2 1 32 32 H 1.08994 * 109.58687 * 113.82110 * 10 9 7 33 33 H 1.09002 * 109.58165 * 353.39966 * 10 9 7 34 34 H 1.08997 * 109.49791 * 185.41139 * 11 10 9 35 35 H 1.09006 * 109.49811 * 65.31238 * 11 10 9 36 36 H 1.08995 * 109.46086 * 301.34140 * 12 11 10 37 37 H 1.09003 * 109.45269 * 181.37969 * 12 11 10 38 38 H 1.09005 * 109.47087 * 54.93318 * 15 13 12 39 39 H 1.09004 * 109.47466 * 174.93318 * 15 13 12 40 40 H 1.09004 * 109.47401 * 94.21850 * 17 16 15 41 41 H 1.09000 * 109.46891 * 214.22127 * 17 16 15 42 42 H 1.08997 * 109.47111 * 334.22239 * 17 16 15 43 43 H 0.96998 * 120.00273 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.58495 * 6.59979 * 26 9 7 45 45 H 1.09005 * 109.58515 * 246.17974 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1209 0.7650 5 6 2.2364 -1.1210 -0.7650 6 1 1.6115 -1.8589 -1.2680 7 6 3.5292 -0.7812 -1.4607 8 8 3.9721 0.3462 -1.4007 9 7 4.1934 -1.7302 -2.1497 10 6 3.6699 -3.1007 -2.2311 11 6 4.7626 -4.0737 -1.7773 12 6 6.0284 -3.8343 -2.6035 13 6 6.5275 -2.4060 -2.3731 14 1 6.7288 -2.2576 -1.3122 15 6 7.8116 -2.1785 -3.1732 16 7 8.8713 -3.0461 -2.6532 17 6 9.7468 -2.5699 -1.5794 18 6 9.0434 -4.3022 -3.1706 19 1 8.6742 -4.5345 -4.1586 20 6 9.6923 -5.2770 -2.4252 21 7 9.9394 -5.0734 -1.1485 22 14 10.2151 -6.8775 -3.2341 23 1 9.8235 -6.8593 -4.6664 24 1 11.6883 -7.0293 -3.1251 25 1 9.5485 -8.0168 -2.5537 26 6 5.4548 -1.4140 -2.8337 27 1 -0.3634 -0.9261 0.4455 28 1 -0.3633 0.8489 0.5792 29 1 -0.3633 0.0772 -1.0247 30 1 1.6112 -1.8586 1.2680 31 1 3.1716 -0.8756 1.2684 32 1 3.3868 -3.3232 -3.2599 33 1 2.8003 -3.1988 -1.5813 34 1 4.4210 -5.0983 -1.9237 35 1 4.9806 -3.9095 -0.7220 36 1 5.8039 -3.9744 -3.6608 37 1 6.7997 -4.5419 -2.2992 38 1 7.6323 -2.4130 -4.2225 39 1 8.1174 -1.1363 -3.0810 40 1 9.3508 -2.8940 -0.6170 41 1 10.7472 -2.9801 -1.7175 42 1 9.7939 -1.4812 -1.6048 43 1 10.3925 -5.7547 -0.6276 44 1 5.7628 -0.3994 -2.5815 45 1 5.3171 -1.4990 -3.9117 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265393263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:10 Heat of formation + Delta-G solvation = -14.885296 kcal Electronic energy + Delta-G solvation = -22893.884312 eV Core-core repulsion = 19718.716201 eV Total energy + Delta-G solvation = -3175.168111 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.42647 -39.29232 -37.68467 -37.12516 -34.32277 -33.02013 -32.05197 -29.66911 -28.02834 -27.46943 -26.63929 -24.54306 -23.56514 -22.66286 -21.69989 -20.85104 -19.73586 -18.68202 -18.36462 -17.17688 -16.75397 -16.23732 -15.92396 -15.50426 -15.33998 -15.21933 -14.91434 -14.63387 -14.45925 -14.07646 -13.90307 -13.81677 -13.53442 -13.16455 -13.02927 -12.88489 -12.77934 -12.54830 -12.34251 -12.31225 -12.01693 -11.94356 -11.85225 -11.71256 -11.53488 -11.31487 -11.16838 -10.92750 -10.75878 -10.56129 -9.62436 -8.75073 -7.77645 -5.24192 1.45241 1.46953 1.49247 1.58365 1.97551 2.53799 2.85574 3.36346 3.45935 3.67836 3.77000 3.84929 3.90228 4.03513 4.11119 4.15258 4.30599 4.42550 4.42943 4.53175 4.58546 4.71211 4.75878 4.81142 4.83051 4.86646 4.88547 4.93734 4.96859 4.98813 5.04269 5.22684 5.25273 5.28275 5.33855 5.43554 5.53520 5.60448 5.67691 5.71639 5.75162 6.36401 6.44135 7.14564 7.18771 7.90110 8.36076 9.26583 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.029890 B = 0.003915 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.541396 B = 7149.717639 C = 7428.819059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.125 4.125 3 H 0.089 0.911 4 C -0.142 4.142 5 C -0.194 4.194 6 H 0.154 0.846 7 C 0.532 3.468 8 O -0.594 6.594 9 N -0.605 5.605 10 C 0.111 3.889 11 C -0.128 4.128 12 C -0.102 4.102 13 C -0.102 4.102 14 H 0.028 0.972 15 C 0.155 3.845 16 N -0.614 5.614 17 C 0.179 3.821 18 C -0.239 4.239 19 H 0.073 0.927 20 C -0.055 4.055 21 N -0.941 5.941 22 Si 0.962 3.038 23 H -0.264 1.264 24 H -0.297 1.297 25 H -0.293 1.293 26 C 0.124 3.876 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.134 0.866 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.042 0.958 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.047 0.953 40 H -0.002 1.002 41 H 0.020 0.980 42 H 0.021 0.979 43 H 0.244 0.756 44 H 0.068 0.932 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.089 4.508 -0.466 20.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.143 4.143 3 H 0.108 0.892 4 C -0.179 4.179 5 C -0.214 4.214 6 H 0.171 0.829 7 C 0.323 3.677 8 O -0.476 6.476 9 N -0.335 5.335 10 C -0.010 4.010 11 C -0.166 4.166 12 C -0.140 4.140 13 C -0.124 4.124 14 H 0.047 0.953 15 C 0.028 3.972 16 N -0.337 5.337 17 C 0.034 3.966 18 C -0.370 4.370 19 H 0.091 0.909 20 C -0.249 4.249 21 N -0.589 5.589 22 Si 0.791 3.209 23 H -0.189 1.189 24 H -0.225 1.225 25 H -0.221 1.221 26 C 0.001 3.999 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.152 0.848 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.129 0.871 34 H 0.108 0.892 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.016 0.984 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.054 0.946 44 H 0.086 0.914 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.758 4.989 -0.370 20.381 hybrid contribution 1.239 -0.906 0.055 1.536 sum -18.519 4.083 -0.316 18.967 Atomic orbital electron populations 1.21392 0.89778 1.03413 1.02737 1.22414 0.96833 0.93814 1.01279 0.89241 1.23176 1.02686 1.01993 0.90075 1.22388 0.96380 1.06351 0.96300 0.82858 1.20392 0.85774 0.83852 0.77726 1.90636 1.70305 1.23092 1.63572 1.48195 1.23175 1.11217 1.50956 1.21997 0.96764 0.78795 1.03456 1.21872 0.95475 1.00130 0.99101 1.21378 0.96918 0.96145 0.99554 1.21921 0.95763 0.95791 0.98928 0.95323 1.20951 0.86775 0.93165 0.96309 1.44160 1.33531 1.13846 1.42157 1.20498 0.93244 0.92546 0.90310 1.19440 1.32576 0.87505 0.97438 0.90893 1.25696 1.02882 1.00705 0.95607 1.70256 1.47002 1.34811 1.06794 0.85272 0.77038 0.80167 0.78435 1.18863 1.22456 1.22072 1.21549 0.82917 0.98672 0.96811 0.90600 0.91108 0.91558 0.84770 0.90445 0.89286 0.87096 0.89209 0.93895 0.91911 0.92993 0.92494 0.93509 0.98364 0.96127 0.96054 0.94646 0.91367 0.89906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 10.19 71.98 0.73 -0.65 16 2 C -0.12 -2.35 5.92 -10.79 -0.06 -2.42 16 3 H 0.09 2.18 7.67 -2.39 -0.02 2.16 16 4 C -0.14 -2.59 9.88 30.59 0.30 -2.28 16 5 C -0.19 -3.91 4.69 -11.54 -0.05 -3.96 16 6 H 0.15 2.10 6.82 -2.39 -0.02 2.09 16 7 C 0.53 15.81 7.48 87.66 0.66 16.47 16 8 O -0.59 -22.72 15.67 -3.03 -0.05 -22.77 16 9 N -0.60 -16.93 2.97 -818.90 -2.43 -19.36 16 10 C 0.11 2.35 6.30 86.36 0.54 2.90 16 11 C -0.13 -3.50 6.08 30.67 0.19 -3.32 16 12 C -0.10 -3.63 4.77 30.62 0.15 -3.49 16 13 C -0.10 -3.79 2.54 -10.72 -0.03 -3.82 16 14 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 15 C 0.15 6.25 5.22 86.38 0.45 6.70 16 16 N -0.61 -30.72 2.80 -726.93 -2.04 -32.76 16 17 C 0.18 9.23 9.01 127.77 1.15 10.38 16 18 C -0.24 -12.71 7.59 84.03 0.64 -12.07 16 19 H 0.07 3.74 7.85 -2.91 -0.02 3.72 16 20 C -0.05 -3.01 5.13 84.86 0.43 -2.57 16 21 N -0.94 -55.62 10.58 21.65 0.23 -55.39 16 22 Si 0.96 44.54 29.57 68.60 2.03 46.57 16 23 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 24 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 26 C 0.12 3.90 5.72 86.36 0.49 4.39 16 27 H 0.08 0.66 7.90 -2.39 -0.02 0.64 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.13 1.62 8.05 -2.39 -0.02 1.60 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.11 1.69 5.67 -2.39 -0.01 1.67 16 34 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.05 2.38 6.26 -2.39 -0.01 2.36 16 38 H 0.06 2.16 8.03 -2.38 -0.02 2.14 16 39 H 0.05 1.79 7.86 -2.39 -0.02 1.77 16 40 H 0.00 -0.11 7.42 -2.39 -0.02 -0.13 16 41 H 0.02 1.12 7.18 -2.39 -0.02 1.10 16 42 H 0.02 0.96 7.84 -2.39 -0.02 0.94 16 43 H 0.24 14.13 8.31 -92.71 -0.77 13.36 16 44 H 0.07 2.39 7.00 -2.39 -0.02 2.38 16 45 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 Total: -1.00 -69.24 350.56 4.27 -64.97 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.94 Total: 12.49 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 5.59 Total: 6.26 kcal Atomic # 7 Polarization: -103.28 SS G_CDS: -4.24 Total: -107.52 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.05 Total: -22.77 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -69.24 4.27 -64.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265393263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.083 kcal (2) G-P(sol) polarization free energy of solvation -69.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds