Wall clock time and date at job start Tue Mar 31 2020 02:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 119.99956 * 2 1 4 4 C 1.52999 * 109.47081 * 124.99928 * 3 2 1 5 5 C 1.53002 * 109.47137 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.46881 * 180.02562 * 5 4 3 7 7 O 1.21284 * 120.00450 * 359.97438 * 6 5 4 8 8 N 1.34785 * 120.00005 * 180.02562 * 6 5 4 9 9 C 1.46495 * 120.00189 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.52453 * 325.08767 * 9 8 6 11 11 C 1.53048 * 109.49475 * 85.16451 * 9 8 6 12 12 C 1.53034 * 109.53722 * 58.58370 * 11 9 8 13 13 C 1.53198 * 109.31446 * 61.36687 * 12 11 9 14 14 N 1.46964 * 108.88743 * 305.44500 * 13 12 11 15 15 C 1.36936 * 120.65018 * 233.53228 * 14 13 12 16 16 H 1.08005 * 119.99715 * 150.06985 * 15 14 13 17 17 C 1.38809 * 120.00262 * 330.05696 * 15 14 13 18 18 N 1.31625 * 119.99934 * 344.60477 * 17 15 14 19 19 Si 1.86794 * 120.00187 * 164.59761 * 17 15 14 20 20 H 1.48503 * 109.47104 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47427 * 120.00327 * 19 17 15 22 22 H 1.48507 * 109.47291 * 240.00689 * 19 17 15 23 23 C 1.46924 * 118.71761 * 53.34690 * 14 13 12 24 24 H 1.09004 * 109.58502 * 66.50642 * 23 14 13 25 25 C 1.53004 * 109.58961 * 186.78602 * 23 14 13 26 26 H 1.08001 * 119.99641 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.99991 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.99979 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47665 * 5.00221 * 3 2 1 30 30 H 1.09001 * 109.47226 * 245.00024 * 3 2 1 31 31 H 1.09006 * 109.46965 * 60.00352 * 4 3 2 32 32 H 1.08993 * 109.47695 * 299.99795 * 4 3 2 33 33 H 1.08993 * 109.47468 * 60.00395 * 5 4 3 34 34 H 1.09003 * 109.46985 * 299.99710 * 5 4 3 35 35 H 0.96998 * 119.99229 * 359.97438 * 8 6 5 36 36 H 1.08997 * 109.45816 * 178.60810 * 11 9 8 37 37 H 1.08997 * 109.45505 * 298.57886 * 11 9 8 38 38 H 1.08994 * 109.49864 * 181.31484 * 12 11 9 39 39 H 1.09000 * 109.50215 * 301.41693 * 12 11 9 40 40 H 1.09001 * 109.58488 * 65.14718 * 13 12 11 41 41 H 1.08992 * 109.59007 * 185.43646 * 13 12 11 42 42 H 0.96998 * 119.99749 * 179.97438 * 18 17 15 43 43 H 1.08992 * 109.46826 * 179.71864 * 25 23 14 44 44 H 1.09000 * 109.46992 * 59.71895 * 25 23 14 45 45 H 1.09001 * 109.46646 * 299.71909 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.8005 2.6578 1.1813 6 6 4.7578 2.6851 2.3448 7 8 4.8213 1.7384 3.1003 8 7 5.5429 3.7620 2.5466 9 6 6.4731 3.7887 3.6779 10 1 6.0296 3.2679 4.5266 11 6 7.7800 3.0982 3.2810 12 6 8.3866 3.8088 2.0690 13 6 8.7005 5.2621 2.4382 14 7 7.4809 5.8942 2.9606 15 6 7.0182 7.0667 2.4254 16 1 5.9598 7.2819 2.4304 17 6 7.9093 7.9786 1.8768 18 7 9.1966 7.8757 2.1315 19 14 7.2818 9.3519 0.7770 20 1 5.8059 9.2483 0.6490 21 1 7.6355 10.6649 1.3737 22 1 7.9049 9.2345 -0.5659 23 6 6.7652 5.2417 4.0655 24 1 7.3822 5.2633 4.9638 25 6 5.4494 5.9766 4.3293 26 1 -0.5399 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1317 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 3.7400 0.5065 1.0920 32 1 2.4773 1.2356 2.1130 33 1 3.0959 3.4846 1.2707 34 1 4.3584 2.7548 0.2499 35 1 5.4918 4.5192 1.9426 36 1 8.4807 3.1403 4.1149 37 1 7.5784 2.0574 3.0282 38 1 9.3051 3.3024 1.7725 39 1 7.6765 3.7888 1.2423 40 1 9.4774 5.2853 3.2024 41 1 9.0423 5.7984 1.5531 42 1 9.8193 8.5127 1.7479 43 1 4.9178 5.4881 5.1458 44 1 4.8339 5.9539 3.4300 45 1 5.6592 7.0114 4.6000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278522122.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:10 Heat of formation + Delta-G solvation = -19.773729 kcal Electronic energy + Delta-G solvation = -22840.558729 eV Core-core repulsion = 19665.178640 eV Total energy + Delta-G solvation = -3175.380090 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.73221 -37.73286 -36.00753 -33.89791 -32.59277 -32.24477 -31.61013 -29.48461 -27.29033 -26.09281 -25.01528 -22.68048 -21.65305 -20.78081 -20.13834 -19.79081 -18.69523 -16.81681 -16.44290 -15.92544 -15.34191 -15.09040 -14.89641 -14.28094 -13.92158 -13.78124 -13.49313 -13.45269 -13.03525 -12.91950 -12.59538 -12.33833 -11.90585 -11.74512 -11.58561 -11.25717 -11.23060 -11.03712 -10.99576 -10.74446 -10.72513 -10.61772 -10.51718 -10.12210 -10.02617 -9.67435 -9.54064 -9.37794 -9.30069 -8.55496 -8.42381 -6.69197 -5.84165 -3.29751 2.10440 3.04227 3.31658 3.39817 3.41228 3.68832 4.42361 4.65908 4.85461 5.00408 5.12251 5.22340 5.29740 5.30499 5.43279 5.52254 5.60095 5.62572 5.67805 5.70643 5.75316 5.80727 5.96490 6.10343 6.12079 6.22201 6.28739 6.33805 6.41959 6.45675 6.52764 6.59975 6.67102 6.68293 6.77875 6.93388 6.96826 7.14264 7.35848 7.63752 7.75416 8.07855 8.39417 8.69401 9.15373 9.78427 10.36205 11.23915 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018596 B = 0.004281 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.368871 B = 6538.307961 C = 7298.504683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C -0.097 4.097 4 C -0.096 4.096 5 C -0.143 4.143 6 C 0.507 3.493 7 O -0.559 6.559 8 N -0.702 5.702 9 C 0.134 3.866 10 H 0.074 0.926 11 C -0.121 4.121 12 C -0.139 4.139 13 C 0.172 3.828 14 N -0.586 5.586 15 C -0.256 4.256 16 H 0.070 0.930 17 C 0.006 3.994 18 N -0.899 5.899 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.159 3.841 24 H 0.038 0.962 25 C -0.135 4.135 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.408 0.592 36 H 0.061 0.939 37 H 0.049 0.951 38 H 0.046 0.954 39 H 0.053 0.947 40 H 0.017 0.983 41 H 0.085 0.915 42 H 0.253 0.747 43 H 0.038 0.962 44 H 0.053 0.947 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.616 -10.333 -2.999 15.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.166 4.166 3 C -0.134 4.134 4 C -0.134 4.134 5 C -0.183 4.183 6 C 0.293 3.707 7 O -0.438 6.438 8 N -0.353 5.353 9 C 0.027 3.973 10 H 0.092 0.908 11 C -0.159 4.159 12 C -0.179 4.179 13 C 0.046 3.954 14 N -0.310 5.310 15 C -0.385 4.385 16 H 0.088 0.912 17 C -0.193 4.193 18 N -0.543 5.543 19 Si 0.729 3.271 20 H -0.202 1.202 21 H -0.218 1.218 22 H -0.216 1.216 23 C 0.052 3.948 24 H 0.055 0.945 25 C -0.193 4.193 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.126 0.874 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.244 0.756 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.036 0.964 41 H 0.103 0.897 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.425 -10.850 -2.502 15.253 hybrid contribution -0.095 1.124 -0.878 1.429 sum -10.519 -9.726 -3.380 14.720 Atomic orbital electron populations 1.23832 0.95994 1.01691 1.02313 1.22994 0.96013 0.98698 0.98861 1.20827 0.98294 0.95295 0.99034 1.21242 0.97504 0.96499 0.98183 1.21688 0.98438 1.00157 0.97982 1.20624 0.81171 0.82598 0.86299 1.90645 1.69620 1.35684 1.47842 1.46046 1.39219 1.19290 1.30756 1.21501 0.88802 0.98703 0.88293 0.90762 1.21763 0.96659 0.98402 0.99095 1.22129 0.99040 0.99566 0.97129 1.20784 0.87616 0.88058 0.98933 1.44151 1.27911 1.23717 1.35190 1.19182 0.91711 0.94462 1.33169 0.91194 1.25114 0.95657 0.97324 1.01239 1.70038 1.01500 1.37514 1.45264 0.86279 0.78261 0.82047 0.80468 1.20246 1.21789 1.21634 1.20715 0.93270 0.89298 0.91502 0.94456 1.21778 0.96617 1.00889 0.99978 0.88658 0.88727 0.87439 0.91464 0.90891 0.91223 0.91246 0.89173 0.89102 0.75585 0.92047 0.93203 0.93522 0.92870 0.96441 0.89708 0.93691 0.94259 0.92801 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.69 14.32 29.01 0.42 -1.28 16 2 C -0.15 -1.34 9.52 -36.03 -0.34 -1.69 16 3 C -0.10 -0.89 5.66 -27.89 -0.16 -1.05 16 4 C -0.10 -1.08 4.49 -26.73 -0.12 -1.20 16 5 C -0.14 -1.67 5.70 -27.88 -0.16 -1.83 16 6 C 0.51 8.00 7.80 -10.98 -0.09 7.91 16 7 O -0.56 -10.58 15.64 5.55 0.09 -10.49 16 8 N -0.70 -11.50 3.46 -53.69 -0.19 -11.68 16 9 C 0.13 2.37 2.33 -67.81 -0.16 2.22 16 10 H 0.07 1.35 7.58 -51.93 -0.39 0.96 16 11 C -0.12 -2.15 5.58 -26.69 -0.15 -2.30 16 12 C -0.14 -2.62 5.93 -26.61 -0.16 -2.78 16 13 C 0.17 3.89 5.28 -3.69 -0.02 3.87 16 14 N -0.59 -13.33 2.66 -164.74 -0.44 -13.77 16 15 C -0.26 -6.34 8.57 -15.06 -0.13 -6.47 16 16 H 0.07 1.68 6.23 -52.48 -0.33 1.35 16 17 C 0.01 0.15 4.94 -17.43 -0.09 0.07 16 18 N -0.90 -24.97 11.23 55.49 0.62 -24.35 16 19 Si 0.90 20.57 29.58 -169.99 -5.03 15.54 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 C 0.16 3.13 3.19 -67.60 -0.22 2.91 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 25 C -0.14 -2.42 7.73 37.16 0.29 -2.14 16 26 H 0.10 0.75 7.84 -52.49 -0.41 0.33 16 27 H 0.09 0.69 8.06 -52.49 -0.42 0.27 16 28 H 0.11 0.92 8.06 -52.49 -0.42 0.50 16 29 H 0.07 0.58 7.79 -51.93 -0.40 0.18 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 32 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.41 6.77 7.78 -40.82 -0.32 6.45 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.05 1.00 7.53 -51.93 -0.39 0.61 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 2.16 6.16 -51.93 -0.32 1.84 16 42 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.94 6.39 -51.93 -0.33 0.61 16 45 H 0.06 1.23 7.64 -51.93 -0.40 0.83 16 LS Contribution 353.77 15.07 5.33 5.33 Total: -1.00 -28.42 353.77 -8.61 -37.03 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -7.92 Total: 6.14 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -1.08 Total: -3.75 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: 0.00 Total: -49.80 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.42 -8.61 -37.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278522122.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.255 kcal (2) G-P(sol) polarization free energy of solvation -28.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds