Wall clock time and date at job start Tue Mar 31 2020 02:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 119.99956 * 2 1 4 4 C 1.52999 * 109.47081 * 124.99928 * 3 2 1 5 5 C 1.53002 * 109.47137 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.46881 * 180.02562 * 5 4 3 7 7 O 1.21284 * 120.00450 * 359.97438 * 6 5 4 8 8 N 1.34785 * 120.00005 * 180.02562 * 6 5 4 9 9 C 1.46495 * 120.00189 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.52453 * 325.08767 * 9 8 6 11 11 C 1.53048 * 109.49475 * 85.16451 * 9 8 6 12 12 C 1.53034 * 109.53722 * 58.58370 * 11 9 8 13 13 C 1.53198 * 109.31446 * 61.36687 * 12 11 9 14 14 N 1.46964 * 108.88743 * 305.44500 * 13 12 11 15 15 C 1.36936 * 120.65018 * 233.53228 * 14 13 12 16 16 H 1.08005 * 119.99715 * 150.06985 * 15 14 13 17 17 C 1.38809 * 120.00262 * 330.05696 * 15 14 13 18 18 N 1.31625 * 119.99934 * 344.60477 * 17 15 14 19 19 Si 1.86794 * 120.00187 * 164.59761 * 17 15 14 20 20 H 1.48503 * 109.47104 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47427 * 120.00327 * 19 17 15 22 22 H 1.48507 * 109.47291 * 240.00689 * 19 17 15 23 23 C 1.46924 * 118.71761 * 53.34690 * 14 13 12 24 24 H 1.09004 * 109.58502 * 66.50642 * 23 14 13 25 25 C 1.53004 * 109.58961 * 186.78602 * 23 14 13 26 26 H 1.08001 * 119.99641 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.99991 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.99979 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47665 * 5.00221 * 3 2 1 30 30 H 1.09001 * 109.47226 * 245.00024 * 3 2 1 31 31 H 1.09006 * 109.46965 * 60.00352 * 4 3 2 32 32 H 1.08993 * 109.47695 * 299.99795 * 4 3 2 33 33 H 1.08993 * 109.47468 * 60.00395 * 5 4 3 34 34 H 1.09003 * 109.46985 * 299.99710 * 5 4 3 35 35 H 0.96998 * 119.99229 * 359.97438 * 8 6 5 36 36 H 1.08997 * 109.45816 * 178.60810 * 11 9 8 37 37 H 1.08997 * 109.45505 * 298.57886 * 11 9 8 38 38 H 1.08994 * 109.49864 * 181.31484 * 12 11 9 39 39 H 1.09000 * 109.50215 * 301.41693 * 12 11 9 40 40 H 1.09001 * 109.58488 * 65.14718 * 13 12 11 41 41 H 1.08992 * 109.59007 * 185.43646 * 13 12 11 42 42 H 0.96998 * 119.99749 * 179.97438 * 18 17 15 43 43 H 1.08992 * 109.46826 * 179.71864 * 25 23 14 44 44 H 1.09000 * 109.46992 * 59.71895 * 25 23 14 45 45 H 1.09001 * 109.46646 * 299.71909 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.8005 2.6578 1.1813 6 6 4.7578 2.6851 2.3448 7 8 4.8213 1.7384 3.1003 8 7 5.5429 3.7620 2.5466 9 6 6.4731 3.7887 3.6779 10 1 6.0296 3.2679 4.5266 11 6 7.7800 3.0982 3.2810 12 6 8.3866 3.8088 2.0690 13 6 8.7005 5.2621 2.4382 14 7 7.4809 5.8942 2.9606 15 6 7.0182 7.0667 2.4254 16 1 5.9598 7.2819 2.4304 17 6 7.9093 7.9786 1.8768 18 7 9.1966 7.8757 2.1315 19 14 7.2818 9.3519 0.7770 20 1 5.8059 9.2483 0.6490 21 1 7.6355 10.6649 1.3737 22 1 7.9049 9.2345 -0.5659 23 6 6.7652 5.2417 4.0655 24 1 7.3822 5.2633 4.9638 25 6 5.4494 5.9766 4.3293 26 1 -0.5399 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1317 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 3.7400 0.5065 1.0920 32 1 2.4773 1.2356 2.1130 33 1 3.0959 3.4846 1.2707 34 1 4.3584 2.7548 0.2499 35 1 5.4918 4.5192 1.9426 36 1 8.4807 3.1403 4.1149 37 1 7.5784 2.0574 3.0282 38 1 9.3051 3.3024 1.7725 39 1 7.6765 3.7888 1.2423 40 1 9.4774 5.2853 3.2024 41 1 9.0423 5.7984 1.5531 42 1 9.8193 8.5127 1.7479 43 1 4.9178 5.4881 5.1458 44 1 4.8339 5.9539 3.4300 45 1 5.6592 7.0114 4.6000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278522122.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:10 Heat of formation + Delta-G solvation = -34.398348 kcal Electronic energy + Delta-G solvation = -22841.192900 eV Core-core repulsion = 19665.178640 eV Total energy + Delta-G solvation = -3176.014261 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.10342 -39.22269 -36.82949 -35.54528 -34.02978 -33.47590 -33.07957 -31.10657 -28.37774 -27.52618 -26.79195 -24.02186 -22.98338 -22.34980 -21.25083 -20.62285 -20.24112 -18.24257 -18.02105 -17.07985 -16.85182 -16.44915 -16.05032 -15.73652 -15.44855 -15.03683 -14.94866 -14.62426 -14.34391 -14.27600 -14.15200 -13.56731 -13.24177 -12.95326 -12.88787 -12.71734 -12.57174 -12.43807 -12.40743 -12.28754 -12.15711 -11.88309 -11.73369 -11.66387 -11.58663 -11.35274 -11.01499 -10.71520 -10.49551 -10.15858 -9.84003 -8.59224 -7.80325 -5.27388 1.44694 1.50233 1.53782 1.61958 1.80800 2.44065 2.55730 3.36356 3.60306 3.86963 3.90982 4.05198 4.08441 4.13130 4.22220 4.37422 4.40168 4.43626 4.58655 4.67344 4.68148 4.71755 4.78638 4.85061 4.96036 4.97651 5.00367 5.06020 5.10788 5.15118 5.24341 5.27324 5.35885 5.43592 5.47662 5.56443 5.70819 5.76936 5.80792 5.81946 5.94034 6.45951 6.78303 7.20931 7.42485 7.90797 8.44885 9.26695 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018596 B = 0.004281 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.368871 B = 6538.307961 C = 7298.504683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.165 4.165 3 C -0.091 4.091 4 C -0.090 4.090 5 C -0.135 4.135 6 C 0.506 3.494 7 O -0.591 6.591 8 N -0.701 5.701 9 C 0.143 3.857 10 H 0.075 0.925 11 C -0.115 4.115 12 C -0.124 4.124 13 C 0.179 3.821 14 N -0.596 5.596 15 C -0.246 4.246 16 H 0.082 0.918 17 C -0.051 4.051 18 N -0.938 5.938 19 Si 0.960 3.040 20 H -0.260 1.260 21 H -0.302 1.302 22 H -0.296 1.296 23 C 0.157 3.843 24 H 0.026 0.974 25 C -0.127 4.127 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.409 0.591 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.056 0.944 40 H -0.008 1.008 41 H 0.054 0.946 42 H 0.246 0.754 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.810 -10.907 -3.881 17.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.183 4.183 3 C -0.128 4.128 4 C -0.128 4.128 5 C -0.175 4.175 6 C 0.294 3.706 7 O -0.473 6.473 8 N -0.351 5.351 9 C 0.036 3.964 10 H 0.093 0.907 11 C -0.154 4.154 12 C -0.163 4.163 13 C 0.054 3.946 14 N -0.320 5.320 15 C -0.376 4.376 16 H 0.100 0.900 17 C -0.246 4.246 18 N -0.584 5.584 19 Si 0.789 3.211 20 H -0.184 1.184 21 H -0.230 1.230 22 H -0.223 1.223 23 C 0.050 3.950 24 H 0.043 0.957 25 C -0.184 4.184 26 H 0.120 0.880 27 H 0.122 0.878 28 H 0.126 0.874 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.245 0.755 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.010 0.990 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.658 -11.438 -3.387 17.393 hybrid contribution 0.565 1.246 -0.526 1.466 sum -12.093 -10.193 -3.913 16.292 Atomic orbital electron populations 1.24013 0.95885 1.02518 1.01096 1.23081 0.96434 0.98813 0.99975 1.20771 0.98004 0.95679 0.98338 1.21165 0.97407 0.95778 0.98488 1.21728 0.97989 1.01109 0.96672 1.21305 0.80985 0.81535 0.86758 1.90636 1.70574 1.36763 1.49303 1.46020 1.39122 1.19695 1.30271 1.21248 0.89173 0.96956 0.89037 0.90698 1.21709 0.96695 0.98352 0.98605 1.21934 0.99867 0.96934 0.97607 1.20565 0.87192 0.90070 0.96803 1.44333 1.27849 1.23540 1.36235 1.19540 0.92137 0.94431 1.31458 0.90045 1.25810 0.95841 0.99780 1.03155 1.70195 1.02634 1.38580 1.47010 0.85315 0.78563 0.78946 0.78255 1.18353 1.22970 1.22319 1.20828 0.93571 0.90507 0.90068 0.95669 1.21694 0.95823 0.99802 1.01115 0.88022 0.87812 0.87439 0.90568 0.89985 0.92607 0.92751 0.87082 0.87327 0.75461 0.91914 0.92746 0.92144 0.92552 0.99027 0.92712 0.94515 0.91958 0.92162 0.93486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.91 14.32 67.78 0.97 -1.94 16 2 C -0.16 -2.70 9.52 25.64 0.24 -2.45 16 3 C -0.09 -1.44 5.66 29.85 0.17 -1.27 16 4 C -0.09 -1.86 4.49 30.59 0.14 -1.72 16 5 C -0.14 -2.79 5.70 29.85 0.17 -2.62 16 6 C 0.51 14.87 7.80 87.66 0.68 15.55 16 7 O -0.59 -21.53 15.64 -3.04 -0.05 -21.57 16 8 N -0.70 -21.43 3.46 -442.15 -1.53 -22.96 16 9 C 0.14 4.86 2.33 45.07 0.10 4.97 16 10 H 0.08 2.60 7.58 -2.39 -0.02 2.58 16 11 C -0.11 -3.95 5.58 30.62 0.17 -3.77 16 12 C -0.12 -4.56 5.93 30.67 0.18 -4.38 16 13 C 0.18 8.22 5.28 86.36 0.46 8.68 16 14 N -0.60 -26.93 2.66 -675.13 -1.79 -28.72 16 15 C -0.25 -12.00 8.57 84.03 0.72 -11.28 16 16 H 0.08 3.75 6.23 -2.91 -0.02 3.74 16 17 C -0.05 -2.65 4.94 84.86 0.42 -2.23 16 18 N -0.94 -53.35 11.23 21.65 0.24 -53.11 16 19 Si 0.96 42.30 29.58 68.60 2.03 44.33 16 20 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 21 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 22 H -0.30 -13.23 7.11 99.48 0.71 -12.53 16 23 C 0.16 6.00 3.19 44.98 0.14 6.15 16 24 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 25 C -0.13 -4.32 7.73 71.98 0.56 -3.76 16 26 H 0.10 1.34 7.84 -2.91 -0.02 1.32 16 27 H 0.10 1.30 8.06 -2.91 -0.02 1.27 16 28 H 0.11 1.71 8.06 -2.91 -0.02 1.69 16 29 H 0.08 1.08 7.79 -2.39 -0.02 1.06 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.29 8.10 -2.38 -0.02 1.27 16 32 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 33 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.41 12.55 7.78 -92.71 -0.72 11.83 16 36 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.06 2.04 7.53 -2.39 -0.02 2.02 16 40 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 41 H 0.05 2.85 6.16 -2.39 -0.01 2.84 16 42 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 43 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.06 1.96 6.39 -2.39 -0.02 1.95 16 45 H 0.05 1.75 7.64 -2.39 -0.02 1.73 16 Total: -1.00 -61.03 353.77 4.25 -56.78 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 0.22 Total: 25.34 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 5.13 Total: -0.07 kcal Atomic # 7 Polarization: -101.71 SS G_CDS: -3.08 Total: -104.79 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.05 Total: -21.57 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -61.03 4.25 -56.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278522122.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.380 kcal (2) G-P(sol) polarization free energy of solvation -61.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds