Wall clock time and date at job start Tue Mar 31 2020 02:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.65700 * 2 1 4 4 C 1.54602 * 110.57110 * 123.39270 * 2 1 3 5 5 N 1.48107 * 103.42387 * 81.17191 * 4 2 1 6 6 C 1.34780 * 127.03232 * 219.28398 * 5 4 2 7 7 O 1.21284 * 119.99967 * 179.68321 * 6 5 4 8 8 C 1.50693 * 120.00072 * 359.68595 * 6 5 4 9 9 C 1.53003 * 109.47096 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47250 * 179.97438 * 9 8 6 11 11 C 1.53000 * 117.50223 * 185.00332 * 10 9 8 12 12 C 1.52997 * 117.49889 * 116.37594 * 10 9 8 13 13 C 1.47484 * 105.93515 * 39.02457 * 5 4 2 14 14 C 1.54007 * 107.07967 * 334.77784 * 13 5 4 15 15 H 1.09007 * 110.32692 * 120.30144 * 14 13 5 16 16 C 1.53000 * 110.32627 * 242.41274 * 14 13 5 17 17 N 1.46508 * 109.47245 * 293.54603 * 16 14 13 18 18 C 1.36937 * 119.99901 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99957 * 0.02562 * 18 17 16 20 20 C 1.38808 * 119.99832 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00248 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00007 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47199 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47252 * 120.00370 * 22 20 18 25 25 H 1.48506 * 109.47076 * 240.00213 * 22 20 18 26 26 H 1.08997 * 109.46959 * 183.19237 * 1 2 3 27 27 H 1.08994 * 109.47576 * 303.19633 * 1 2 3 28 28 H 1.09001 * 109.46629 * 63.19775 * 1 2 3 29 29 H 1.09006 * 110.61479 * 322.65169 * 4 2 1 30 30 H 1.09002 * 110.54374 * 199.65531 * 4 2 1 31 31 H 1.09002 * 109.47265 * 59.99814 * 8 6 5 32 32 H 1.09003 * 109.47216 * 299.99691 * 8 6 5 33 33 H 1.08999 * 109.46947 * 60.00456 * 9 8 6 34 34 H 1.08991 * 109.47447 * 300.00001 * 9 8 6 35 35 H 1.09002 * 115.55911 * 330.69022 * 10 9 8 36 36 H 1.08990 * 117.49990 * 145.01974 * 11 10 9 37 37 H 1.09004 * 117.49237 * 359.97438 * 11 10 9 38 38 H 1.08999 * 117.49685 * 0.02562 * 12 10 9 39 39 H 1.08997 * 117.50044 * 214.98097 * 12 10 9 40 40 H 1.08997 * 109.91612 * 94.13894 * 13 5 4 41 41 H 1.09000 * 109.91818 * 215.23083 * 13 5 4 42 42 H 1.09000 * 109.47344 * 53.54508 * 16 14 13 43 43 H 1.09006 * 109.47078 * 173.54912 * 16 14 13 44 44 H 0.96995 * 119.99704 * 0.02562 * 17 16 14 45 45 H 0.96993 * 120.00295 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0733 -0.7966 1.2085 5 7 1.9871 -2.2051 0.7586 6 6 1.6220 -3.2721 1.4968 7 8 1.5903 -4.3752 0.9937 8 6 1.2532 -3.0944 2.9470 9 6 0.8804 -4.4510 3.5483 10 6 0.5065 -4.2708 5.0210 11 6 0.2142 -5.5327 5.8353 12 6 -0.9301 -4.6011 5.4306 13 6 2.3763 -2.2004 -0.6639 14 6 2.0776 -0.7917 -1.2099 15 1 2.9908 -0.3294 -1.5849 16 6 1.0254 -0.8634 -2.3183 17 7 1.5804 -1.5736 -3.4734 18 6 0.8158 -1.7616 -4.5936 19 1 -0.1963 -1.3860 -4.6259 20 6 1.3414 -2.4349 -5.6877 21 7 2.5747 -2.8931 -5.6482 22 14 0.2986 -2.6909 -7.2163 23 1 -1.0415 -2.0857 -7.0083 24 1 0.9585 -2.0456 -8.3795 25 1 0.1494 -4.1454 -7.4759 26 1 -0.3633 -1.0260 0.0572 27 1 -0.3634 0.5626 0.8599 28 1 -0.3632 0.4634 -0.9173 29 1 1.4488 -0.6345 2.0871 30 1 3.1076 -0.5212 1.4145 31 1 0.4030 -2.4167 3.0253 32 1 2.1017 -2.6771 3.4892 33 1 1.7303 -5.1290 3.4701 34 1 0.0318 -4.8680 3.0061 35 1 0.9984 -3.4439 5.5333 36 1 0.5138 -5.5360 6.8832 37 1 0.2879 -6.4913 5.3217 38 1 -1.6088 -4.9473 4.6511 39 1 -1.3833 -3.9917 6.2124 40 1 3.4403 -2.4173 -0.7584 41 1 1.7961 -2.9440 -1.2101 42 1 0.1475 -1.3956 -1.9521 43 1 0.7408 0.1462 -2.6150 44 1 2.4893 -1.9112 -3.4442 45 1 2.9422 -3.3633 -6.4129 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279083182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:40 Heat of formation + Delta-G solvation = -11.721508 kcal Electronic energy + Delta-G solvation = -22167.621886 eV Core-core repulsion = 18992.590967 eV Total energy + Delta-G solvation = -3175.030919 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.15393 -38.31923 -37.43708 -34.60879 -32.79440 -32.20240 -31.12366 -29.05168 -26.90198 -25.76446 -24.40075 -22.92594 -22.59866 -21.69601 -20.62232 -19.07133 -19.01462 -17.20795 -16.74577 -16.41358 -15.74329 -15.28657 -15.14142 -14.75661 -14.09843 -13.87396 -13.59204 -13.44265 -13.25578 -12.83567 -12.66204 -12.33478 -12.15848 -11.91936 -11.78502 -11.77714 -11.58535 -11.46350 -11.35928 -11.00667 -10.84209 -10.57441 -10.52952 -10.41906 -10.20168 -10.09866 -9.90397 -9.68024 -9.60836 -8.84638 -8.48908 -6.88649 -5.73093 -3.01800 2.78404 3.08037 3.46127 3.51455 3.53875 3.55779 4.32936 4.53517 4.57777 4.63902 4.67821 4.70637 4.88950 4.93029 5.06350 5.13775 5.27348 5.34809 5.39461 5.41116 5.48879 5.53955 5.59776 5.62990 5.66456 5.76345 5.82208 5.85065 5.87220 5.95166 6.05470 6.09583 6.18362 6.19141 6.33592 6.35890 6.47275 6.53476 6.74827 6.90541 7.71267 7.73475 8.32553 8.45640 9.56794 10.14270 10.48574 11.49882 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021428 B = 0.003411 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.384651 B = 8207.369211 C = 8796.659203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.087 0.913 4 C 0.103 3.897 5 N -0.619 5.619 6 C 0.526 3.474 7 O -0.539 6.539 8 C -0.130 4.130 9 C -0.075 4.075 10 C -0.153 4.153 11 C -0.182 4.182 12 C -0.182 4.182 13 C 0.111 3.889 14 C -0.104 4.104 15 H 0.084 0.916 16 C 0.162 3.838 17 N -0.734 5.734 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.906 3.094 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.291 1.291 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.062 0.938 41 H 0.089 0.911 42 H 0.024 0.976 43 H 0.021 0.979 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.388 4.424 23.571 24.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 H 0.105 0.895 4 C -0.020 4.020 5 N -0.353 5.353 6 C 0.315 3.685 7 O -0.416 6.416 8 C -0.170 4.170 9 C -0.113 4.113 10 C -0.171 4.171 11 C -0.219 4.219 12 C -0.219 4.219 13 C -0.011 4.011 14 C -0.123 4.123 15 H 0.103 0.897 16 C 0.035 3.965 17 N -0.378 5.378 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.581 5.581 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.080 0.920 41 H 0.108 0.892 42 H 0.042 0.958 43 H 0.039 0.961 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.577 3.733 23.236 23.675 hybrid contribution -0.139 -0.157 -0.910 0.934 sum -2.716 3.576 22.326 22.774 Atomic orbital electron populations 1.21823 0.94325 1.02134 1.01812 1.22195 0.96696 0.98901 0.94087 0.89456 1.22551 1.00849 0.81012 0.97624 1.48871 1.66994 1.07251 1.12220 1.20327 0.76778 0.83198 0.88243 1.90738 1.53184 1.24384 1.73331 1.21608 1.03006 1.00052 0.92365 1.20935 1.02607 0.95895 0.91834 1.22351 0.99005 0.99593 0.96174 1.22964 1.03532 0.95047 1.00332 1.23058 0.91479 1.03679 1.03692 1.22141 1.00211 0.98563 0.80183 1.22337 1.00430 0.94208 0.95362 0.89726 1.20792 0.93704 0.95353 0.86661 1.42410 1.15548 1.67255 1.12576 1.19246 0.95952 1.29730 0.92010 0.91208 1.24741 0.96562 1.01191 0.98512 1.69666 1.14262 1.43335 1.30857 0.86125 0.79296 0.77482 0.83345 1.20590 1.21894 1.21865 0.92421 0.93197 0.91453 0.90366 0.91011 0.89010 0.89179 0.90776 0.90925 0.87807 0.88944 0.88692 0.88675 0.88997 0.91965 0.89231 0.95846 0.96093 0.78322 0.93570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 7.97 37.16 0.30 -1.39 16 2 C -0.10 -1.14 3.60 -88.93 -0.32 -1.46 16 3 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 4 C 0.10 1.05 6.37 -2.32 -0.01 1.03 16 5 N -0.62 -8.77 3.19 -169.98 -0.54 -9.31 16 6 C 0.53 7.88 7.89 -10.99 -0.09 7.79 16 7 O -0.54 -10.62 16.32 5.55 0.09 -10.53 16 8 C -0.13 -1.31 4.59 -27.88 -0.13 -1.44 16 9 C -0.07 -0.78 4.78 -26.73 -0.13 -0.91 16 10 C -0.15 -1.26 5.74 -90.62 -0.52 -1.78 16 11 C -0.18 -1.42 10.25 -26.73 -0.27 -1.70 16 12 C -0.18 -1.42 10.18 -26.73 -0.27 -1.70 16 13 C 0.11 1.89 6.31 -2.98 -0.02 1.87 16 14 C -0.10 -1.62 3.00 -89.25 -0.27 -1.89 16 15 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 16 C 0.16 3.23 4.18 -4.04 -0.02 3.21 16 17 N -0.73 -18.75 5.33 -59.90 -0.32 -19.07 16 18 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 19 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -28.75 13.06 55.49 0.72 -28.03 16 22 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 26 H 0.06 0.78 7.61 -51.93 -0.40 0.39 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.85 6.67 -51.93 -0.35 0.51 16 29 H 0.08 0.62 7.13 -51.93 -0.37 0.24 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.79 7.90 -51.93 -0.41 0.38 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 34 H 0.07 0.87 7.83 -51.93 -0.41 0.46 16 35 H 0.10 0.73 8.07 -51.93 -0.42 0.31 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.78 8.03 -51.93 -0.42 0.36 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.09 1.90 7.49 -51.93 -0.39 1.51 16 42 H 0.02 0.49 6.85 -51.93 -0.36 0.14 16 43 H 0.02 0.42 7.55 -51.93 -0.39 0.03 16 44 H 0.38 10.29 7.51 -40.82 -0.31 9.98 16 45 H 0.25 7.57 8.31 -40.82 -0.34 7.24 16 LS Contribution 359.28 15.07 5.41 5.41 Total: -1.00 -33.53 359.28 -9.63 -43.17 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -7.98 Total: 6.29 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -2.00 Total: -5.81 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.14 Total: -56.41 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.53 -9.63 -43.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279083182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.444 kcal (2) G-P(sol) polarization free energy of solvation -33.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds