Wall clock time and date at job start Tue Mar 31 2020 02:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50706 * 119.99845 * 2 1 4 4 C 1.50699 * 120.00061 * 180.02562 * 2 1 3 5 5 C 1.53006 * 109.46866 * 94.99862 * 4 2 1 6 6 C 1.50699 * 109.46866 * 179.97438 * 5 4 2 7 7 O 1.21282 * 120.00040 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00033 * 180.02562 * 6 5 4 9 9 C 1.47020 * 125.64462 * 0.02562 * 8 6 5 10 10 C 1.54327 * 107.26924 * 181.02703 * 9 8 6 11 11 H 1.08999 * 110.71797 * 263.65279 * 10 9 8 12 12 C 1.52995 * 110.72317 * 140.55766 * 10 9 8 13 13 C 1.55160 * 102.94361 * 22.18994 * 10 9 8 14 14 H 1.09005 * 111.00149 * 82.60936 * 13 10 9 15 15 C 1.53000 * 111.00512 * 206.42573 * 13 10 9 16 16 N 1.46505 * 109.46945 * 185.00057 * 15 13 10 17 17 C 1.36935 * 119.99885 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00110 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00161 * 180.02562 * 17 16 15 20 20 N 1.31625 * 119.99902 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00323 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47032 * 90.00099 * 21 19 17 23 23 H 1.48499 * 109.47384 * 209.99942 * 21 19 17 24 24 H 1.48500 * 109.47341 * 330.00373 * 21 19 17 25 25 C 1.47425 * 125.64901 * 179.71780 * 8 6 5 26 26 H 1.07998 * 119.99890 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.00067 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46616 * 240.00126 * 3 2 1 29 29 H 1.08993 * 109.46846 * 359.97438 * 3 2 1 30 30 H 1.08991 * 109.46885 * 120.00262 * 3 2 1 31 31 H 1.09000 * 109.47247 * 335.00031 * 4 2 1 32 32 H 1.09001 * 109.47358 * 214.99457 * 4 2 1 33 33 H 1.08993 * 109.46955 * 300.00219 * 5 4 2 34 34 H 1.09000 * 109.47050 * 60.00048 * 5 4 2 35 35 H 1.09002 * 109.88223 * 300.43813 * 9 8 6 36 36 H 1.08999 * 109.88472 * 61.61198 * 9 8 6 37 37 H 1.08993 * 109.47008 * 61.45015 * 12 10 9 38 38 H 1.09001 * 109.47305 * 181.45549 * 12 10 9 39 39 H 1.09000 * 109.46911 * 301.45066 * 12 10 9 40 40 H 1.08990 * 109.47205 * 305.00084 * 15 13 10 41 41 H 1.09000 * 109.46975 * 65.00042 * 15 13 10 42 42 H 0.97000 * 119.99818 * 359.97438 * 16 15 13 43 43 H 0.96996 * 119.99908 * 180.02562 * 20 19 17 44 44 H 1.09001 * 110.36341 * 274.74266 * 25 8 6 45 45 H 1.09004 * 110.36728 * 37.06614 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6832 -1.4378 6 6 3.1814 -2.9880 -1.4384 7 8 3.4061 -3.5589 -0.3922 8 7 3.6070 -3.5199 -2.6013 9 6 3.4055 -2.9356 -3.9353 10 6 4.0373 -3.9022 -4.9591 11 1 5.0474 -3.5843 -5.2172 12 6 3.1676 -4.0063 -6.2135 13 6 4.0611 -5.2518 -4.1940 14 1 3.0952 -5.7533 -4.2562 15 6 5.1801 -6.1569 -4.7132 16 7 5.0978 -7.4625 -4.0537 17 6 6.0031 -8.4429 -4.3607 18 1 6.7776 -8.2539 -5.0893 19 6 5.9249 -9.6802 -3.7362 20 7 4.9807 -9.9108 -2.8486 21 14 7.1594 -11.0178 -4.1555 22 1 8.3308 -10.9121 -3.2489 23 1 6.5228 -12.3490 -3.9884 24 1 7.6062 -10.8558 -5.5624 25 6 4.3572 -4.7808 -2.7459 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 2.6902 1.3629 -0.8901 29 1 1.3552 2.1336 -0.0005 30 1 2.6901 1.3629 0.8899 31 1 1.4386 -2.0856 0.4334 32 1 2.9743 -1.1991 0.5888 33 1 1.5167 -1.7892 -2.0272 34 1 3.0523 -0.9027 -1.8718 35 1 2.3395 -2.8282 -4.1358 36 1 3.8953 -1.9635 -3.9921 37 1 3.0926 -3.0269 -6.6859 38 1 3.6185 -4.7125 -6.9107 39 1 2.1720 -4.3538 -5.9375 40 1 5.0725 -6.2864 -5.7900 41 1 6.1462 -5.7008 -4.4969 42 1 4.4024 -7.6322 -3.3990 43 1 4.9262 -10.7752 -2.4120 44 1 5.4245 -4.6045 -2.6125 45 1 4.0009 -5.5187 -2.0271 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325524035.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:57 Heat of formation + Delta-G solvation = -26.504095 kcal Electronic energy + Delta-G solvation = -21880.571368 eV Core-core repulsion = 18704.899427 eV Total energy + Delta-G solvation = -3175.671940 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.12422 -38.10111 -36.49803 -34.65297 -32.90035 -31.57534 -31.24184 -29.08369 -27.53962 -26.46990 -25.83119 -24.11654 -22.82643 -21.12677 -19.99455 -19.12372 -18.64558 -17.16265 -16.75639 -16.25407 -15.70920 -15.09576 -14.66880 -14.47452 -14.23852 -13.95693 -13.64765 -13.62584 -13.17553 -13.16094 -12.88859 -12.58209 -12.33711 -12.21557 -12.12332 -11.94525 -11.91821 -11.32947 -11.25234 -11.09246 -11.06684 -10.85099 -10.59222 -10.46048 -10.34715 -10.00844 -9.76546 -9.65321 -9.26350 -8.86357 -8.52177 -6.91309 -5.74322 -3.03743 1.95634 2.72254 3.08933 3.45253 3.49900 3.51918 4.34685 4.53277 4.58079 4.64440 4.73937 4.83157 4.87979 4.98956 5.08581 5.25323 5.30811 5.31444 5.38451 5.48501 5.49926 5.53738 5.59865 5.63133 5.67009 5.73478 5.76979 5.82992 5.97919 6.01031 6.06397 6.14693 6.20362 6.29823 6.39106 6.40243 6.47630 6.63560 6.71147 6.83760 7.63145 7.71088 8.26089 8.43893 9.55060 10.12201 10.46515 11.48375 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025371 B = 0.003167 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.373678 B = 8840.364955 C = 9587.860885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.072 4.072 5 C -0.127 4.127 6 C 0.523 3.477 7 O -0.540 6.540 8 N -0.620 5.620 9 C 0.106 3.894 10 C -0.099 4.099 11 H 0.086 0.914 12 C -0.140 4.140 13 C -0.100 4.100 14 H 0.086 0.914 15 C 0.166 3.834 16 N -0.733 5.733 17 C -0.241 4.241 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.114 3.886 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.024 0.976 41 H 0.021 0.979 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.070 0.930 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.765 22.914 -1.393 24.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.125 4.125 3 C -0.177 4.177 4 C -0.110 4.110 5 C -0.167 4.167 6 C 0.311 3.689 7 O -0.417 6.417 8 N -0.354 5.354 9 C -0.018 4.018 10 C -0.118 4.118 11 H 0.105 0.895 12 C -0.197 4.197 13 C -0.120 4.120 14 H 0.104 0.896 15 C 0.038 3.962 16 N -0.377 5.377 17 C -0.372 4.372 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.007 4.007 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.042 0.958 41 H 0.039 0.961 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.538 22.551 -0.827 23.792 hybrid contribution 0.425 -0.842 -0.071 0.946 sum -7.113 21.709 -0.898 22.862 Atomic orbital electron populations 1.23750 0.95193 1.01860 1.02554 1.21795 0.95466 0.95710 0.99542 1.20888 1.00249 0.94268 1.02279 1.20418 1.00984 0.94197 0.95391 1.21592 1.00993 0.95008 0.99146 1.20347 0.79385 0.86793 0.82349 1.90732 1.57416 1.62869 1.30673 1.48615 1.56201 1.24598 1.05981 1.22132 1.00545 0.96829 0.82258 1.22223 1.00144 0.94942 0.94526 0.89520 1.21742 0.99596 1.01651 0.96740 1.22708 1.01352 0.94700 0.93231 0.89591 1.20578 0.93909 0.86319 0.95419 1.42370 1.36828 1.09010 1.49503 1.19203 1.07177 0.91874 1.18970 0.91184 1.24755 0.98905 0.97951 0.99342 1.69664 1.34551 1.23406 1.30392 0.86189 0.80608 0.81629 0.77746 1.21713 1.21782 1.20785 1.22385 0.95992 0.84706 0.97646 0.88557 0.88418 0.91581 0.92099 0.91502 0.90424 0.90433 0.89045 0.89115 0.91436 0.91689 0.92705 0.91620 0.92443 0.95807 0.96145 0.78219 0.93474 0.91208 0.89918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.58 13.90 29.01 0.40 -1.18 16 2 C -0.13 -1.07 5.31 -101.06 -0.54 -1.61 16 3 C -0.12 -0.83 10.12 36.01 0.36 -0.47 16 4 C -0.07 -0.75 4.67 -27.88 -0.13 -0.88 16 5 C -0.13 -1.29 4.87 -27.88 -0.14 -1.43 16 6 C 0.52 7.69 7.85 -10.99 -0.09 7.61 16 7 O -0.54 -10.30 16.24 5.56 0.09 -10.21 16 8 N -0.62 -8.74 3.32 -170.38 -0.57 -9.31 16 9 C 0.11 1.10 6.08 -3.06 -0.02 1.09 16 10 C -0.10 -1.13 3.01 -88.78 -0.27 -1.40 16 11 H 0.09 0.96 8.04 -51.93 -0.42 0.54 16 12 C -0.14 -1.38 9.13 37.16 0.34 -1.04 16 13 C -0.10 -1.57 2.51 -88.35 -0.22 -1.79 16 14 H 0.09 1.43 8.04 -51.93 -0.42 1.01 16 15 C 0.17 3.22 5.72 -4.04 -0.02 3.20 16 16 N -0.73 -18.54 5.55 -59.91 -0.33 -18.87 16 17 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 18 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -28.64 13.06 55.49 0.72 -27.92 16 21 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.11 1.93 6.33 -2.41 -0.02 1.91 16 26 H 0.10 0.65 7.83 -52.49 -0.41 0.24 16 27 H 0.10 0.79 7.99 -52.49 -0.42 0.37 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.36 7.78 -51.93 -0.40 -0.04 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.90 7.94 -51.93 -0.41 0.49 16 32 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.61 7.82 -51.93 -0.41 0.21 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.02 0.41 7.96 -51.93 -0.41 -0.01 16 42 H 0.38 10.33 7.67 -40.82 -0.31 10.02 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.07 1.22 7.91 -51.93 -0.41 0.81 16 45 H 0.08 1.64 8.04 -51.93 -0.42 1.22 16 LS Contribution 368.57 15.07 5.55 5.55 Total: -1.00 -32.97 368.57 -8.34 -41.31 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -8.21 Total: 5.25 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -0.57 Total: -3.41 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: -0.17 Total: -56.10 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.97 -8.34 -41.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325524035.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.802 kcal (2) G-P(sol) polarization free energy of solvation -32.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds