Wall clock time and date at job start Tue Mar 31 2020 02:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50706 * 119.99845 * 2 1 4 4 C 1.50699 * 120.00061 * 180.02562 * 2 1 3 5 5 C 1.53006 * 109.46866 * 94.99862 * 4 2 1 6 6 C 1.50699 * 109.46866 * 179.97438 * 5 4 2 7 7 O 1.21282 * 120.00040 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00033 * 180.02562 * 6 5 4 9 9 C 1.47020 * 125.64462 * 0.02562 * 8 6 5 10 10 C 1.54327 * 107.26924 * 181.02703 * 9 8 6 11 11 H 1.08999 * 110.71797 * 263.65279 * 10 9 8 12 12 C 1.52995 * 110.72317 * 140.55766 * 10 9 8 13 13 C 1.55160 * 102.94361 * 22.18994 * 10 9 8 14 14 H 1.09005 * 111.00149 * 82.60936 * 13 10 9 15 15 C 1.53000 * 111.00512 * 206.42573 * 13 10 9 16 16 N 1.46505 * 109.46945 * 185.00057 * 15 13 10 17 17 C 1.36935 * 119.99885 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00110 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00161 * 180.02562 * 17 16 15 20 20 N 1.31625 * 119.99902 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00323 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47032 * 90.00099 * 21 19 17 23 23 H 1.48499 * 109.47384 * 209.99942 * 21 19 17 24 24 H 1.48500 * 109.47341 * 330.00373 * 21 19 17 25 25 C 1.47425 * 125.64901 * 179.71780 * 8 6 5 26 26 H 1.07998 * 119.99890 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.00067 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46616 * 240.00126 * 3 2 1 29 29 H 1.08993 * 109.46846 * 359.97438 * 3 2 1 30 30 H 1.08991 * 109.46885 * 120.00262 * 3 2 1 31 31 H 1.09000 * 109.47247 * 335.00031 * 4 2 1 32 32 H 1.09001 * 109.47358 * 214.99457 * 4 2 1 33 33 H 1.08993 * 109.46955 * 300.00219 * 5 4 2 34 34 H 1.09000 * 109.47050 * 60.00048 * 5 4 2 35 35 H 1.09002 * 109.88223 * 300.43813 * 9 8 6 36 36 H 1.08999 * 109.88472 * 61.61198 * 9 8 6 37 37 H 1.08993 * 109.47008 * 61.45015 * 12 10 9 38 38 H 1.09001 * 109.47305 * 181.45549 * 12 10 9 39 39 H 1.09000 * 109.46911 * 301.45066 * 12 10 9 40 40 H 1.08990 * 109.47205 * 305.00084 * 15 13 10 41 41 H 1.09000 * 109.46975 * 65.00042 * 15 13 10 42 42 H 0.97000 * 119.99818 * 359.97438 * 16 15 13 43 43 H 0.96996 * 119.99908 * 180.02562 * 20 19 17 44 44 H 1.09001 * 110.36341 * 274.74266 * 25 8 6 45 45 H 1.09004 * 110.36728 * 37.06614 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6832 -1.4378 6 6 3.1814 -2.9880 -1.4384 7 8 3.4061 -3.5589 -0.3922 8 7 3.6070 -3.5199 -2.6013 9 6 3.4055 -2.9356 -3.9353 10 6 4.0373 -3.9022 -4.9591 11 1 5.0474 -3.5843 -5.2172 12 6 3.1676 -4.0063 -6.2135 13 6 4.0611 -5.2518 -4.1940 14 1 3.0952 -5.7533 -4.2562 15 6 5.1801 -6.1569 -4.7132 16 7 5.0978 -7.4625 -4.0537 17 6 6.0031 -8.4429 -4.3607 18 1 6.7776 -8.2539 -5.0893 19 6 5.9249 -9.6802 -3.7362 20 7 4.9807 -9.9108 -2.8486 21 14 7.1594 -11.0178 -4.1555 22 1 8.3308 -10.9121 -3.2489 23 1 6.5228 -12.3490 -3.9884 24 1 7.6062 -10.8558 -5.5624 25 6 4.3572 -4.7808 -2.7459 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 2.6902 1.3629 -0.8901 29 1 1.3552 2.1336 -0.0005 30 1 2.6901 1.3629 0.8899 31 1 1.4386 -2.0856 0.4334 32 1 2.9743 -1.1991 0.5888 33 1 1.5167 -1.7892 -2.0272 34 1 3.0523 -0.9027 -1.8718 35 1 2.3395 -2.8282 -4.1358 36 1 3.8953 -1.9635 -3.9921 37 1 3.0926 -3.0269 -6.6859 38 1 3.6185 -4.7125 -6.9107 39 1 2.1720 -4.3538 -5.9375 40 1 5.0725 -6.2864 -5.7900 41 1 6.1462 -5.7008 -4.4969 42 1 4.4024 -7.6322 -3.3990 43 1 4.9262 -10.7752 -2.4120 44 1 5.4245 -4.6045 -2.6125 45 1 4.0009 -5.5187 -2.0271 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325524035.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:57 Heat of formation + Delta-G solvation = -47.032182 kcal Electronic energy + Delta-G solvation = -21881.461532 eV Core-core repulsion = 18704.899427 eV Total energy + Delta-G solvation = -3176.562105 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.27834 -39.27203 -37.27199 -36.46584 -34.26866 -33.04838 -32.31686 -30.58823 -28.10287 -27.51824 -27.17378 -25.50548 -24.36332 -22.40775 -21.21954 -20.23831 -19.34753 -19.09574 -17.86964 -17.48108 -16.78171 -16.58105 -15.96907 -15.51846 -15.34060 -15.22567 -15.00970 -14.90150 -14.33441 -14.29591 -13.94256 -13.54415 -13.44615 -13.36032 -13.27860 -13.00859 -12.88191 -12.77493 -12.49607 -12.43817 -12.14751 -11.99370 -11.94845 -11.85075 -11.77736 -11.58942 -11.36528 -10.97882 -10.91437 -9.91893 -9.69328 -9.01821 -7.96102 -5.25727 1.31379 1.45739 1.48269 1.56597 1.58605 1.99823 2.54907 3.33482 3.39117 3.53363 3.69667 3.79520 3.96183 4.03699 4.14816 4.24867 4.26391 4.34264 4.41745 4.52127 4.53507 4.59367 4.71527 4.73148 4.81696 4.85729 4.88009 4.89583 4.96147 5.05437 5.08664 5.13292 5.17953 5.19765 5.21602 5.26816 5.38302 5.47838 5.53729 5.76269 6.00991 6.25472 6.53231 7.11796 7.31297 8.07375 8.29234 9.27676 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025371 B = 0.003167 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.373678 B = 8840.364955 C = 9587.860885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.131 4.131 3 C -0.119 4.119 4 C -0.071 4.071 5 C -0.113 4.113 6 C 0.513 3.487 7 O -0.597 6.597 8 N -0.619 5.619 9 C 0.103 3.897 10 C -0.088 4.088 11 H 0.097 0.903 12 C -0.136 4.136 13 C -0.092 4.092 14 H 0.073 0.927 15 C 0.165 3.835 16 N -0.748 5.748 17 C -0.244 4.244 18 H 0.080 0.920 19 C -0.080 4.080 20 N -0.972 5.972 21 Si 0.976 3.024 22 H -0.289 1.289 23 H -0.296 1.296 24 H -0.265 1.265 25 C 0.118 3.882 26 H 0.113 0.887 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.035 0.965 41 H 0.023 0.977 42 H 0.371 0.629 43 H 0.250 0.750 44 H 0.058 0.942 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.941 25.765 -3.648 27.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.131 4.131 3 C -0.176 4.176 4 C -0.109 4.109 5 C -0.152 4.152 6 C 0.304 3.696 7 O -0.478 6.478 8 N -0.352 5.352 9 C -0.018 4.018 10 C -0.107 4.107 11 H 0.115 0.885 12 C -0.193 4.193 13 C -0.111 4.111 14 H 0.092 0.908 15 C 0.039 3.961 16 N -0.391 5.391 17 C -0.376 4.376 18 H 0.097 0.903 19 C -0.272 4.272 20 N -0.623 5.623 21 Si 0.804 3.196 22 H -0.216 1.216 23 H -0.223 1.223 24 H -0.190 1.190 25 C -0.005 4.005 26 H 0.131 0.869 27 H 0.111 0.889 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.132 0.868 34 H 0.139 0.861 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.052 0.948 41 H 0.041 0.959 42 H 0.202 0.798 43 H 0.059 0.941 44 H 0.076 0.924 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.707 25.463 -3.154 26.790 hybrid contribution 0.475 -1.687 0.627 1.861 sum -7.232 23.776 -2.527 24.980 Atomic orbital electron populations 1.23894 0.95105 1.02481 1.01597 1.21766 0.95610 0.95343 1.00423 1.20913 1.00491 0.93538 1.02660 1.20350 1.00206 0.94879 0.95472 1.21604 1.01568 0.92659 0.99386 1.21308 0.78868 0.87878 0.81520 1.90706 1.59626 1.64677 1.32793 1.48720 1.55339 1.23489 1.07654 1.22437 1.02451 0.97517 0.79383 1.22233 1.01532 0.91850 0.95116 0.88489 1.21730 0.98809 1.03240 0.95567 1.22526 0.99075 0.96392 0.93136 0.90811 1.20745 0.95436 0.84496 0.95446 1.42638 1.36006 1.10804 1.49624 1.19665 1.07230 0.92478 1.18195 0.90256 1.25635 1.01131 1.00547 0.99856 1.69842 1.36771 1.23651 1.32072 0.85104 0.78012 0.78240 0.78195 1.21592 1.22270 1.18964 1.22099 0.95538 0.85506 0.97407 0.86852 0.88938 0.90575 0.90841 0.91773 0.92615 0.91943 0.86824 0.86084 0.89045 0.88219 0.89533 0.92633 0.92624 0.94759 0.95928 0.79770 0.94089 0.92355 0.94339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.72 13.90 67.78 0.94 -1.78 16 2 C -0.13 -2.00 5.31 -16.49 -0.09 -2.09 16 3 C -0.12 -1.34 10.12 71.24 0.72 -0.62 16 4 C -0.07 -1.45 4.67 29.85 0.14 -1.31 16 5 C -0.11 -2.04 4.87 29.85 0.15 -1.90 16 6 C 0.51 15.04 7.85 87.66 0.69 15.73 16 7 O -0.60 -24.04 16.24 -3.04 -0.05 -24.09 16 8 N -0.62 -16.96 3.32 -811.33 -2.70 -19.66 16 9 C 0.10 1.78 6.08 86.73 0.53 2.31 16 10 C -0.09 -1.77 3.01 -9.60 -0.03 -1.80 16 11 H 0.10 1.80 8.04 -2.39 -0.02 1.78 16 12 C -0.14 -2.20 9.13 71.98 0.66 -1.54 16 13 C -0.09 -2.86 2.51 -9.32 -0.02 -2.89 16 14 H 0.07 2.50 8.04 -2.38 -0.02 2.48 16 15 C 0.17 6.43 5.72 86.38 0.49 6.92 16 16 N -0.75 -38.89 5.55 -343.46 -1.91 -40.80 16 17 C -0.24 -13.87 9.99 84.03 0.84 -13.03 16 18 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 19 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 20 N -0.97 -61.76 13.06 21.65 0.28 -61.48 16 21 Si 0.98 47.13 29.55 68.60 2.03 49.16 16 22 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 23 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 25 C 0.12 4.12 6.33 86.93 0.55 4.67 16 26 H 0.11 1.21 7.83 -2.91 -0.02 1.18 16 27 H 0.09 1.37 7.99 -2.91 -0.02 1.35 16 28 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.07 0.65 7.78 -2.39 -0.02 0.63 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 31 H 0.06 1.35 7.94 -2.39 -0.02 1.33 16 32 H 0.06 1.44 8.10 -2.39 -0.02 1.42 16 33 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.09 1.22 7.82 -2.39 -0.02 1.20 16 36 H 0.10 1.14 8.14 -2.39 -0.02 1.13 16 37 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 38 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.05 0.94 8.13 -2.39 -0.02 0.92 16 40 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.02 0.88 7.96 -2.39 -0.02 0.87 16 42 H 0.37 20.96 7.67 -92.71 -0.71 20.25 16 43 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 44 H 0.06 2.13 7.91 -2.39 -0.02 2.11 16 45 H 0.04 1.66 8.04 -2.38 -0.02 1.64 16 Total: -1.00 -75.49 368.57 3.91 -71.57 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 0.22 Total: 26.85 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 6.03 Total: -1.55 kcal Atomic # 7 Polarization: -117.62 SS G_CDS: -4.32 Total: -121.94 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.05 Total: -24.09 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -75.49 3.91 -71.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325524035.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.541 kcal (2) G-P(sol) polarization free energy of solvation -75.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds