Wall clock time and date at job start Tue Mar 31 2020 02:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.58811 * 2 1 4 4 C 1.53196 * 109.58560 * 239.71165 * 2 1 3 5 5 H 1.08990 * 109.49970 * 305.52975 * 4 2 1 6 6 N 1.46501 * 109.49441 * 65.62996 * 4 2 1 7 7 C 1.34778 * 119.99917 * 204.99702 * 6 4 2 8 8 O 1.21277 * 119.99985 * 0.02562 * 7 6 4 9 9 C 1.50701 * 119.99971 * 180.02562 * 7 6 4 10 10 C 1.53000 * 109.46797 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46856 * 179.97438 * 10 9 7 12 12 C 1.53000 * 117.50264 * 243.62415 * 11 10 9 13 13 C 1.52994 * 117.50050 * 175.00074 * 11 10 9 14 14 C 1.53044 * 109.31295 * 185.57688 * 4 2 1 15 15 C 1.53041 * 109.53246 * 61.36770 * 14 4 2 16 16 C 1.53188 * 109.31848 * 298.63138 * 15 14 4 17 17 N 1.46927 * 109.58588 * 120.28521 * 2 1 3 18 18 C 1.36935 * 120.62940 * 353.38904 * 17 2 1 19 19 H 1.08003 * 119.99813 * 41.07555 * 18 17 2 20 20 C 1.38817 * 120.00241 * 221.07036 * 18 17 2 21 21 N 1.31620 * 119.99935 * 214.86690 * 20 18 17 22 22 Si 1.86796 * 120.00163 * 34.86651 * 20 18 17 23 23 H 1.48500 * 109.46996 * 84.62722 * 22 20 18 24 24 H 1.48496 * 109.47555 * 204.62971 * 22 20 18 25 25 H 1.48509 * 109.47005 * 324.63156 * 22 20 18 26 26 H 1.08998 * 109.47137 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47039 * 60.00000 * 1 2 3 28 28 H 1.09005 * 109.46929 * 300.00338 * 1 2 3 29 29 H 0.97000 * 120.00275 * 25.00071 * 6 4 2 30 30 H 1.09006 * 109.47088 * 300.00155 * 9 7 6 31 31 H 1.08996 * 109.47044 * 60.00119 * 9 7 6 32 32 H 1.08994 * 109.46948 * 299.99819 * 10 9 7 33 33 H 1.09003 * 109.46993 * 60.00363 * 10 9 7 34 34 H 1.09000 * 115.54691 * 29.33006 * 11 10 9 35 35 H 1.09008 * 117.49595 * 359.97438 * 12 11 10 36 36 H 1.08993 * 117.50232 * 145.01861 * 12 11 10 37 37 H 1.09001 * 117.50367 * 214.98079 * 13 11 10 38 38 H 1.09007 * 117.50022 * 359.97438 * 13 11 10 39 39 H 1.08990 * 109.45994 * 181.38566 * 14 4 2 40 40 H 1.08998 * 109.46099 * 301.36698 * 14 4 2 41 41 H 1.09005 * 109.50233 * 58.58975 * 15 14 4 42 42 H 1.09001 * 109.49692 * 178.68184 * 15 14 4 43 43 H 1.08997 * 109.59334 * 174.42345 * 16 15 14 44 44 H 1.08997 * 109.58653 * 294.71215 * 16 15 14 45 45 H 0.97001 * 119.99998 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7279 -1.2463 5 1 1.6030 -1.7237 -1.2934 6 7 1.6706 0.0297 -2.4434 7 6 1.5472 -0.6005 -3.6285 8 8 1.7446 -1.7947 -3.7036 9 6 1.1641 0.1790 -4.8600 10 6 1.0932 -0.7669 -6.0605 11 6 0.7036 0.0243 -7.3108 12 6 -0.6264 -0.3247 -7.9818 13 6 0.6931 -0.7237 -8.6454 14 6 3.5675 -0.8466 -1.1712 15 6 3.9568 -1.6659 0.0615 16 6 3.4651 -0.9487 1.3226 17 7 2.0225 -0.6981 1.1953 18 6 1.1537 -1.1103 2.1702 19 1 0.2048 -1.5483 1.8977 20 6 1.4925 -0.9653 3.5085 21 7 1.1104 -1.8691 4.3857 22 14 2.4906 0.5125 4.0645 23 1 1.5810 1.6604 4.3094 24 1 3.2141 0.1782 5.3175 25 1 3.4703 0.8737 3.0085 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 1.5124 0.9848 -2.3833 30 1 0.1906 0.6449 -4.7069 31 1 1.9106 0.9505 -5.0485 32 1 2.0664 -1.2331 -6.2137 33 1 0.3464 -1.5382 -5.8717 34 1 1.0143 1.0690 -7.3218 35 1 -1.2237 -1.1183 -7.5328 36 1 -1.1910 0.4904 -8.4343 37 1 0.9966 -0.1710 -9.5346 38 1 0.9642 -1.7794 -8.6329 39 1 3.9378 -1.3424 -2.0684 40 1 4.0061 0.1486 -1.0988 41 1 3.4982 -2.6530 0.0020 42 1 5.0411 -1.7699 0.1016 43 1 3.6518 -1.5745 2.1953 44 1 3.9921 -0.0010 1.4330 45 1 1.3474 -1.7680 5.3209 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332164253.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:59 Heat of formation + Delta-G solvation = -8.689334 kcal Electronic energy + Delta-G solvation = -22526.340445 eV Core-core repulsion = 19351.441011 eV Total energy + Delta-G solvation = -3174.899434 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.85521 -38.11265 -37.43723 -34.31714 -32.80082 -32.30372 -31.65199 -29.80845 -26.53973 -25.19148 -24.65405 -22.62363 -22.13863 -20.80401 -20.59894 -20.12414 -19.44114 -16.89122 -16.44111 -16.10118 -15.70178 -15.37270 -14.80696 -14.47149 -14.33476 -13.86996 -13.64309 -13.42535 -13.25552 -12.95450 -12.49756 -12.31397 -11.92544 -11.84292 -11.80915 -11.52883 -11.39535 -11.36313 -11.14771 -10.76213 -10.57767 -10.54703 -10.38567 -10.32559 -10.10514 -10.06192 -9.83215 -9.54813 -9.45728 -8.71225 -8.35914 -6.74817 -6.09768 -3.41020 2.84165 3.35181 3.38938 3.49684 3.54097 3.57229 4.43851 4.56179 4.63009 4.70278 4.79541 4.93028 5.06463 5.15007 5.26348 5.31590 5.38352 5.38943 5.47426 5.55553 5.64675 5.66430 5.77923 5.81119 5.86432 5.95401 5.96079 6.09655 6.18926 6.25929 6.34302 6.35976 6.48079 6.54752 6.60303 6.71152 6.89505 6.90879 7.02317 7.12330 7.75058 8.01330 8.39397 8.46877 8.97695 9.69760 10.17835 11.05499 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.036565 B = 0.003459 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.575829 B = 8092.426329 C = 8341.281552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.163 3.837 3 H 0.028 0.972 4 C 0.131 3.869 5 H 0.088 0.912 6 N -0.721 5.721 7 C 0.509 3.491 8 O -0.544 6.544 9 C -0.138 4.138 10 C -0.073 4.073 11 C -0.153 4.153 12 C -0.182 4.182 13 C -0.182 4.182 14 C -0.117 4.117 15 C -0.134 4.134 16 C 0.141 3.859 17 N -0.590 5.590 18 C -0.277 4.277 19 H 0.077 0.923 20 C 0.052 3.948 21 N -0.878 5.878 22 Si 0.844 3.156 23 H -0.288 1.288 24 H -0.297 1.297 25 H -0.260 1.260 26 H 0.057 0.943 27 H 0.038 0.962 28 H 0.065 0.935 29 H 0.396 0.604 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.068 0.932 44 H 0.025 0.975 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.860 6.829 -20.275 21.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.057 3.943 3 H 0.046 0.954 4 C 0.025 3.975 5 H 0.106 0.894 6 N -0.372 5.372 7 C 0.295 3.705 8 O -0.421 6.421 9 C -0.178 4.178 10 C -0.111 4.111 11 C -0.171 4.171 12 C -0.219 4.219 13 C -0.219 4.219 14 C -0.156 4.156 15 C -0.174 4.174 16 C 0.016 3.984 17 N -0.315 5.315 18 C -0.405 4.405 19 H 0.094 0.906 20 C -0.151 4.151 21 N -0.517 5.517 22 Si 0.671 3.329 23 H -0.215 1.215 24 H -0.224 1.224 25 H -0.185 1.185 26 H 0.076 0.924 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.229 0.771 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.042 0.958 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.964 5.875 -20.110 20.973 hybrid contribution 0.496 1.431 0.528 1.604 sum 1.459 7.306 -19.581 20.951 Atomic orbital electron populations 1.21775 0.95030 1.02106 1.00191 1.20699 0.93881 0.93265 0.86496 0.95442 1.21691 0.94782 0.97072 0.83957 0.89379 1.46157 1.70380 1.12105 1.08530 1.20654 0.76938 0.88206 0.84714 1.90698 1.50365 1.15285 1.85801 1.21657 1.03506 0.99422 0.93188 1.20910 1.02898 0.96747 0.90558 1.22368 1.01339 0.99934 0.93503 1.23054 0.90779 1.03575 1.04497 1.22960 1.01670 1.01210 0.96098 1.21759 0.95724 0.99873 0.98250 1.22032 0.99352 1.00011 0.95999 1.21350 0.84632 0.96749 0.95700 1.44277 1.02534 1.65494 1.19149 1.18568 1.02287 1.35363 0.84255 0.90572 1.25565 0.96786 0.96912 0.95851 1.70085 1.46978 1.31275 1.03325 0.87360 0.80737 0.86779 0.78066 1.21535 1.22388 1.18495 0.92405 0.94312 0.91611 0.77080 0.88962 0.89148 0.90864 0.91007 0.87811 0.88691 0.89008 0.88980 0.88728 0.92806 0.92806 0.91732 0.92732 0.91363 0.95756 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 7.96 37.16 0.30 -2.14 16 2 C 0.16 3.11 3.03 -67.60 -0.20 2.91 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C 0.13 2.26 2.00 -67.81 -0.14 2.12 16 5 H 0.09 1.81 7.58 -51.93 -0.39 1.41 16 6 N -0.72 -9.77 4.58 -53.69 -0.25 -10.02 16 7 C 0.51 7.08 7.80 -10.98 -0.09 6.99 16 8 O -0.54 -9.92 15.64 5.56 0.09 -9.83 16 9 C -0.14 -1.30 5.66 -27.88 -0.16 -1.46 16 10 C -0.07 -0.73 4.79 -26.73 -0.13 -0.86 16 11 C -0.15 -1.24 5.74 -90.62 -0.52 -1.76 16 12 C -0.18 -1.40 10.18 -26.73 -0.27 -1.67 16 13 C -0.18 -1.40 10.25 -26.74 -0.27 -1.67 16 14 C -0.12 -1.98 5.46 -26.69 -0.15 -2.12 16 15 C -0.13 -2.45 6.08 -26.61 -0.16 -2.62 16 16 C 0.14 3.03 4.60 -3.69 -0.02 3.01 16 17 N -0.59 -13.60 2.47 -164.74 -0.41 -14.00 16 18 C -0.28 -7.43 8.43 -15.06 -0.13 -7.56 16 19 H 0.08 2.20 6.82 -52.48 -0.36 1.84 16 20 C 0.05 1.45 4.82 -17.43 -0.08 1.36 16 21 N -0.88 -26.04 13.97 55.49 0.78 -25.26 16 22 Si 0.84 20.97 27.40 -169.99 -4.66 16.31 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 25 H -0.26 -6.18 5.24 56.52 0.30 -5.89 16 26 H 0.06 1.15 7.40 -51.93 -0.38 0.77 16 27 H 0.04 0.57 7.79 -51.93 -0.40 0.17 16 28 H 0.06 1.29 7.69 -51.93 -0.40 0.89 16 29 H 0.40 4.23 8.60 -40.82 -0.35 3.88 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.82 8.10 -51.93 -0.42 0.39 16 33 H 0.07 0.82 7.83 -51.93 -0.41 0.41 16 34 H 0.10 0.73 8.07 -51.93 -0.42 0.31 16 35 H 0.09 0.75 8.03 -51.92 -0.42 0.34 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.07 1.59 7.03 -51.93 -0.36 1.22 16 44 H 0.02 0.52 6.70 -51.93 -0.35 0.17 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 351.68 15.07 5.30 5.30 Total: -1.00 -31.08 351.68 -9.30 -40.38 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -8.14 Total: 2.59 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -2.02 Total: -5.47 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 0.12 Total: -49.29 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.66 Total: 16.31 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.08 -9.30 -40.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332164253.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.695 kcal (2) G-P(sol) polarization free energy of solvation -31.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds