Wall clock time and date at job start Tue Mar 31 2020 02:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.58811 * 2 1 4 4 C 1.53196 * 109.58560 * 239.71165 * 2 1 3 5 5 H 1.08990 * 109.49970 * 305.52975 * 4 2 1 6 6 N 1.46501 * 109.49441 * 65.62996 * 4 2 1 7 7 C 1.34778 * 119.99917 * 204.99702 * 6 4 2 8 8 O 1.21277 * 119.99985 * 0.02562 * 7 6 4 9 9 C 1.50701 * 119.99971 * 180.02562 * 7 6 4 10 10 C 1.53000 * 109.46797 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46856 * 179.97438 * 10 9 7 12 12 C 1.53000 * 117.50264 * 243.62415 * 11 10 9 13 13 C 1.52994 * 117.50050 * 175.00074 * 11 10 9 14 14 C 1.53044 * 109.31295 * 185.57688 * 4 2 1 15 15 C 1.53041 * 109.53246 * 61.36770 * 14 4 2 16 16 C 1.53188 * 109.31848 * 298.63138 * 15 14 4 17 17 N 1.46927 * 109.58588 * 120.28521 * 2 1 3 18 18 C 1.36935 * 120.62940 * 353.38904 * 17 2 1 19 19 H 1.08003 * 119.99813 * 41.07555 * 18 17 2 20 20 C 1.38817 * 120.00241 * 221.07036 * 18 17 2 21 21 N 1.31620 * 119.99935 * 214.86690 * 20 18 17 22 22 Si 1.86796 * 120.00163 * 34.86651 * 20 18 17 23 23 H 1.48500 * 109.46996 * 84.62722 * 22 20 18 24 24 H 1.48496 * 109.47555 * 204.62971 * 22 20 18 25 25 H 1.48509 * 109.47005 * 324.63156 * 22 20 18 26 26 H 1.08998 * 109.47137 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47039 * 60.00000 * 1 2 3 28 28 H 1.09005 * 109.46929 * 300.00338 * 1 2 3 29 29 H 0.97000 * 120.00275 * 25.00071 * 6 4 2 30 30 H 1.09006 * 109.47088 * 300.00155 * 9 7 6 31 31 H 1.08996 * 109.47044 * 60.00119 * 9 7 6 32 32 H 1.08994 * 109.46948 * 299.99819 * 10 9 7 33 33 H 1.09003 * 109.46993 * 60.00363 * 10 9 7 34 34 H 1.09000 * 115.54691 * 29.33006 * 11 10 9 35 35 H 1.09008 * 117.49595 * 359.97438 * 12 11 10 36 36 H 1.08993 * 117.50232 * 145.01861 * 12 11 10 37 37 H 1.09001 * 117.50367 * 214.98079 * 13 11 10 38 38 H 1.09007 * 117.50022 * 359.97438 * 13 11 10 39 39 H 1.08990 * 109.45994 * 181.38566 * 14 4 2 40 40 H 1.08998 * 109.46099 * 301.36698 * 14 4 2 41 41 H 1.09005 * 109.50233 * 58.58975 * 15 14 4 42 42 H 1.09001 * 109.49692 * 178.68184 * 15 14 4 43 43 H 1.08997 * 109.59334 * 174.42345 * 16 15 14 44 44 H 1.08997 * 109.58653 * 294.71215 * 16 15 14 45 45 H 0.97001 * 119.99998 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7279 -1.2463 5 1 1.6030 -1.7237 -1.2934 6 7 1.6706 0.0297 -2.4434 7 6 1.5472 -0.6005 -3.6285 8 8 1.7446 -1.7947 -3.7036 9 6 1.1641 0.1790 -4.8600 10 6 1.0932 -0.7669 -6.0605 11 6 0.7036 0.0243 -7.3108 12 6 -0.6264 -0.3247 -7.9818 13 6 0.6931 -0.7237 -8.6454 14 6 3.5675 -0.8466 -1.1712 15 6 3.9568 -1.6659 0.0615 16 6 3.4651 -0.9487 1.3226 17 7 2.0225 -0.6981 1.1953 18 6 1.1537 -1.1103 2.1702 19 1 0.2048 -1.5483 1.8977 20 6 1.4925 -0.9653 3.5085 21 7 1.1104 -1.8691 4.3857 22 14 2.4906 0.5125 4.0645 23 1 1.5810 1.6604 4.3094 24 1 3.2141 0.1782 5.3175 25 1 3.4703 0.8737 3.0085 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 1.5124 0.9848 -2.3833 30 1 0.1906 0.6449 -4.7069 31 1 1.9106 0.9505 -5.0485 32 1 2.0664 -1.2331 -6.2137 33 1 0.3464 -1.5382 -5.8717 34 1 1.0143 1.0690 -7.3218 35 1 -1.2237 -1.1183 -7.5328 36 1 -1.1910 0.4904 -8.4343 37 1 0.9966 -0.1710 -9.5346 38 1 0.9642 -1.7794 -8.6329 39 1 3.9378 -1.3424 -2.0684 40 1 4.0061 0.1486 -1.0988 41 1 3.4982 -2.6530 0.0020 42 1 5.0411 -1.7699 0.1016 43 1 3.6518 -1.5745 2.1953 44 1 3.9921 -0.0010 1.4330 45 1 1.3474 -1.7680 5.3209 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332164253.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:58 Heat of formation + Delta-G solvation = -27.609312 kcal Electronic energy + Delta-G solvation = -22527.160877 eV Core-core repulsion = 19351.441011 eV Total energy + Delta-G solvation = -3175.719866 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.08398 -39.42429 -38.28857 -35.84158 -34.42926 -33.51143 -33.16623 -31.34430 -28.05001 -26.76885 -25.92605 -23.68452 -23.17859 -22.35489 -21.40515 -21.28884 -20.94058 -18.43415 -17.86685 -17.40499 -16.79657 -16.47494 -16.23227 -16.01684 -15.47251 -15.30801 -15.07318 -14.83778 -14.48142 -14.37745 -14.12265 -13.73673 -13.41803 -13.03390 -12.94151 -12.72521 -12.63573 -12.41405 -12.38236 -12.20401 -12.09350 -12.02365 -11.82947 -11.73753 -11.54816 -11.27859 -11.17770 -10.79376 -10.69485 -10.47367 -9.95590 -8.64868 -8.24387 -5.52190 1.40493 1.46995 1.55720 1.75760 2.24151 2.49457 2.94425 2.96657 3.44086 3.74650 3.84932 3.90986 3.99767 4.08443 4.12533 4.15322 4.29986 4.36774 4.43844 4.49207 4.57973 4.64596 4.72956 4.76801 4.83317 4.84931 4.92516 5.00273 5.07095 5.08535 5.09639 5.12759 5.19071 5.23456 5.28362 5.30676 5.42335 5.47682 5.51281 5.66340 5.94761 6.27051 6.69401 7.01381 7.39877 7.66134 8.15492 8.95513 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.036565 B = 0.003459 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.575829 B = 8092.426329 C = 8341.281552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.161 3.839 3 H 0.054 0.946 4 C 0.143 3.857 5 H 0.047 0.953 6 N -0.709 5.709 7 C 0.505 3.495 8 O -0.594 6.594 9 C -0.125 4.125 10 C -0.072 4.072 11 C -0.151 4.151 12 C -0.183 4.183 13 C -0.187 4.187 14 C -0.110 4.110 15 C -0.127 4.127 16 C 0.138 3.862 17 N -0.605 5.605 18 C -0.263 4.263 19 H 0.039 0.961 20 C -0.002 4.002 21 N -0.930 5.930 22 Si 0.910 3.090 23 H -0.290 1.290 24 H -0.304 1.304 25 H -0.237 1.237 26 H 0.027 0.973 27 H 0.079 0.921 28 H 0.048 0.952 29 H 0.415 0.585 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.124 0.876 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.040 0.960 42 H 0.083 0.917 43 H 0.041 0.959 44 H 0.039 0.961 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.074 10.181 -22.615 24.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.055 3.945 3 H 0.072 0.928 4 C 0.036 3.964 5 H 0.065 0.935 6 N -0.361 5.361 7 C 0.294 3.706 8 O -0.474 6.474 9 C -0.164 4.164 10 C -0.110 4.110 11 C -0.169 4.169 12 C -0.220 4.220 13 C -0.224 4.224 14 C -0.148 4.148 15 C -0.167 4.167 16 C 0.013 3.987 17 N -0.330 5.330 18 C -0.392 4.392 19 H 0.057 0.943 20 C -0.201 4.201 21 N -0.572 5.572 22 Si 0.736 3.264 23 H -0.217 1.217 24 H -0.231 1.231 25 H -0.161 1.161 26 H 0.046 0.954 27 H 0.097 0.903 28 H 0.067 0.933 29 H 0.252 0.748 30 H 0.135 0.865 31 H 0.141 0.859 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.142 0.858 35 H 0.104 0.896 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.059 0.941 42 H 0.101 0.899 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.187 9.286 -22.494 24.434 hybrid contribution 0.061 0.285 1.167 1.203 sum 2.248 9.571 -21.328 23.484 Atomic orbital electron populations 1.21699 0.94821 1.00534 1.01301 1.20876 0.94173 0.94085 0.85332 0.92833 1.21223 0.95032 0.95343 0.84756 0.93453 1.45948 1.70064 1.12828 1.07264 1.21498 0.75589 0.87839 0.85701 1.90690 1.52437 1.17777 1.86514 1.21675 1.05623 0.99095 0.90049 1.20840 1.01339 0.96750 0.92076 1.22347 1.01589 1.00542 0.92457 1.23110 0.90752 1.03793 1.04368 1.23036 1.01793 1.00989 0.96607 1.21692 0.95123 1.00745 0.97257 1.21931 1.00851 0.98614 0.95300 1.21382 0.83870 0.97191 0.96239 1.44400 1.02796 1.66335 1.19485 1.18401 1.01468 1.34070 0.85306 0.94324 1.26102 0.99000 0.98977 0.95983 1.70189 1.50165 1.33191 1.03613 0.86303 0.79578 0.82742 0.77730 1.21693 1.23115 1.16101 0.95364 0.90267 0.93307 0.74770 0.86534 0.85917 0.92530 0.93265 0.85774 0.89599 0.87536 0.87557 0.89661 0.92691 0.90431 0.94138 0.89891 0.93990 0.94269 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.51 7.96 71.98 0.57 -3.94 16 2 C 0.16 5.85 3.03 44.98 0.14 5.99 16 3 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 4 C 0.14 4.74 2.00 45.07 0.09 4.83 16 5 H 0.05 1.98 7.58 -2.39 -0.02 1.96 16 6 N -0.71 -17.11 4.58 -442.16 -2.02 -19.14 16 7 C 0.51 13.01 7.80 87.66 0.68 13.69 16 8 O -0.59 -21.58 15.64 -3.02 -0.05 -21.63 16 9 C -0.12 -1.93 5.66 29.85 0.17 -1.76 16 10 C -0.07 -1.33 4.79 30.60 0.15 -1.18 16 11 C -0.15 -2.04 5.74 -10.79 -0.06 -2.10 16 12 C -0.18 -2.44 10.18 30.59 0.31 -2.12 16 13 C -0.19 -2.54 10.25 30.59 0.31 -2.22 16 14 C -0.11 -3.41 5.46 30.62 0.17 -3.25 16 15 C -0.13 -4.48 6.08 30.67 0.19 -4.30 16 16 C 0.14 5.74 4.60 86.35 0.40 6.14 16 17 N -0.61 -27.65 2.47 -675.12 -1.67 -29.32 16 18 C -0.26 -14.53 8.43 84.03 0.71 -13.82 16 19 H 0.04 2.39 6.82 -2.91 -0.02 2.37 16 20 C 0.00 -0.10 4.82 84.86 0.41 0.31 16 21 N -0.93 -57.23 13.97 21.65 0.30 -56.93 16 22 Si 0.91 43.59 27.40 68.60 1.88 45.47 16 23 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 24 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 25 H -0.24 -10.35 5.24 99.48 0.52 -9.82 16 26 H 0.03 1.15 7.40 -2.39 -0.02 1.13 16 27 H 0.08 2.14 7.79 -2.39 -0.02 2.12 16 28 H 0.05 1.90 7.69 -2.38 -0.02 1.88 16 29 H 0.42 6.92 8.60 -92.71 -0.80 6.13 16 30 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 33 H 0.05 1.11 7.83 -2.39 -0.02 1.09 16 34 H 0.12 1.20 8.07 -2.39 -0.02 1.19 16 35 H 0.09 1.29 8.03 -2.38 -0.02 1.27 16 36 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 42 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.04 1.95 7.03 -2.39 -0.02 1.93 16 44 H 0.04 1.53 6.70 -2.39 -0.02 1.52 16 45 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -71.17 351.68 2.64 -68.53 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -0.03 Total: 16.75 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 4.23 Total: -3.73 kcal Atomic # 7 Polarization: -102.00 SS G_CDS: -3.39 Total: -105.39 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.05 Total: -21.63 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.47 kcal Total: -71.17 2.64 -68.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332164253.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.916 kcal (2) G-P(sol) polarization free energy of solvation -71.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds