Wall clock time and date at job start Tue Mar 31 2020 01:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.31160 * 2 1 4 4 C 1.54994 * 110.34786 * 237.81006 * 2 1 3 5 5 C 1.53261 * 104.18813 * 243.51399 * 4 2 1 6 6 H 1.09005 * 110.29635 * 90.99684 * 5 4 2 7 7 C 1.52253 * 113.89577 * 215.60358 * 5 4 2 8 8 C 1.53664 * 107.57505 * 177.23420 * 7 5 4 9 9 C 1.52817 * 110.61789 * 303.87753 * 8 7 5 10 10 H 1.09001 * 109.22940 * 293.42888 * 9 8 7 11 11 C 1.50695 * 109.23062 * 174.01526 * 9 8 7 12 12 O 1.21292 * 119.99906 * 239.99791 * 11 9 8 13 13 N 1.34767 * 120.00302 * 60.00022 * 11 9 8 14 14 C 1.46509 * 120.00320 * 180.02562 * 13 11 9 15 15 C 1.52998 * 109.47058 * 179.97438 * 14 13 11 16 16 C 1.50702 * 109.47153 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99556 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00134 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00143 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99946 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46801 * 89.99976 * 20 18 16 22 22 H 1.48498 * 109.47093 * 209.99796 * 20 18 16 23 23 H 1.48503 * 109.47121 * 330.00453 * 20 18 16 24 24 C 1.53631 * 110.69812 * 53.74048 * 9 8 7 25 25 N 1.45662 * 107.79751 * 302.62553 * 24 9 8 26 26 C 1.47093 * 116.54365 * 182.69584 * 25 24 9 27 27 H 1.09003 * 109.47425 * 180.69720 * 1 2 3 28 28 H 1.08998 * 109.47283 * 300.70038 * 1 2 3 29 29 H 1.09003 * 109.47020 * 60.70135 * 1 2 3 30 30 H 1.09000 * 110.48567 * 2.19341 * 4 2 1 31 31 H 1.08995 * 110.48368 * 124.83606 * 4 2 1 32 32 H 1.09000 * 109.83772 * 296.75260 * 7 5 4 33 33 H 1.08999 * 109.83970 * 57.65345 * 7 5 4 34 34 H 1.09005 * 109.24573 * 64.16792 * 8 7 5 35 35 H 1.08996 * 109.25108 * 183.58303 * 8 7 5 36 36 H 0.97001 * 120.00101 * 359.97438 * 13 11 9 37 37 H 1.09003 * 109.46853 * 299.99795 * 14 13 11 38 38 H 1.09000 * 109.46903 * 59.99837 * 14 13 11 39 39 H 1.08994 * 109.47785 * 300.00141 * 15 14 13 40 40 H 1.09009 * 109.46993 * 60.00169 * 15 14 13 41 41 H 0.96998 * 120.00051 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.79303 * 62.20228 * 24 9 8 43 43 H 1.09000 * 109.79677 * 182.99382 * 24 9 8 44 44 H 1.09005 * 110.60593 * 79.06012 * 26 25 24 45 45 H 1.08996 * 110.61141 * 316.08379 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9084 1.0222 0.0000 4 6 2.0689 -0.7742 -1.2298 5 6 2.8209 -1.9645 -0.6244 6 1 2.1527 -2.8192 -0.5178 7 6 4.0691 -2.3642 -1.3993 8 6 4.7418 -3.5145 -0.6340 9 6 5.0396 -3.1008 0.8066 10 1 5.7962 -2.3162 0.8057 11 6 5.5612 -4.2924 1.5675 12 8 4.9663 -4.6960 2.5443 13 7 6.6888 -4.9095 1.1626 14 6 7.1956 -6.0684 1.9020 15 6 8.4772 -6.5762 1.2382 16 6 8.9989 -7.7678 1.9991 17 1 8.4690 -8.1272 2.8689 18 6 10.1525 -8.3991 1.5849 19 7 10.7979 -7.9611 0.5261 20 14 10.7987 -9.8766 2.5277 21 1 10.2122 -11.1188 1.9636 22 1 12.2781 -9.9302 2.4105 23 1 10.4194 -9.7554 3.9583 24 6 3.7695 -2.5782 1.4951 25 7 3.2610 -1.4648 0.7055 26 6 2.0718 -0.7760 1.2299 27 1 -0.3634 -1.0276 0.0125 28 1 -0.3634 0.5247 0.8836 29 1 -0.3633 0.5029 -0.8962 30 1 1.2449 -1.1206 -1.8536 31 1 2.7484 -0.1474 -1.8073 32 1 3.7927 -2.6972 -2.3996 33 1 4.7500 -1.5157 -1.4670 34 1 4.0784 -4.3795 -0.6296 35 1 5.6744 -3.7802 -1.1316 36 1 7.1645 -4.5870 0.3812 37 1 7.4093 -5.7779 2.9306 38 1 6.4457 -6.8595 1.8960 39 1 8.2633 -6.8667 0.2097 40 1 9.2272 -5.7852 1.2438 41 1 11.6093 -8.4054 0.2345 42 1 3.0220 -3.3702 1.5409 43 1 4.0090 -2.2382 2.5027 44 1 2.3485 -0.0863 2.0274 45 1 1.3353 -1.4974 1.5834 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346734378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:59 Heat of formation + Delta-G solvation = -61.136219 kcal Electronic energy + Delta-G solvation = -22077.478825 eV Core-core repulsion = 18900.305123 eV Total energy + Delta-G solvation = -3177.173702 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.53764 -39.00065 -35.58575 -34.85238 -32.91708 -32.49271 -31.38537 -29.49366 -27.56196 -26.49932 -24.74424 -22.88922 -22.45587 -20.96487 -20.50013 -20.19211 -19.45627 -16.95212 -16.35685 -15.86851 -15.63980 -15.33119 -15.11189 -14.62603 -14.41801 -14.20484 -14.00895 -13.46754 -13.26580 -13.04238 -12.73014 -12.61270 -12.49556 -12.33432 -12.29045 -11.71047 -11.27729 -11.20567 -11.09075 -11.04110 -10.97359 -10.69588 -10.64770 -10.63516 -10.41206 -10.32084 -9.75838 -9.42461 -9.13629 -8.57629 -8.52652 -8.34433 -6.09631 -4.12439 3.01880 3.29161 3.35171 3.39006 3.51238 3.99178 4.24955 4.38747 4.42378 4.67750 4.71550 4.77809 4.82466 5.07035 5.12935 5.17819 5.27386 5.31112 5.32144 5.34584 5.39140 5.50002 5.55055 5.63528 5.66744 5.73563 5.77802 5.83040 5.88763 5.92295 6.04720 6.06321 6.22530 6.35349 6.35816 6.74122 6.75739 6.93826 7.03939 7.51672 7.61700 7.88614 8.03327 8.27816 8.67081 8.93598 9.52393 11.01965 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.050095 B = 0.002733 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.808380 B =10241.394696 C =10607.565742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.079 0.921 4 C -0.112 4.112 5 C 0.058 3.942 6 H 0.051 0.949 7 C -0.102 4.102 8 C -0.113 4.113 9 C -0.101 4.101 10 H 0.102 0.898 11 C 0.510 3.490 12 O -0.554 6.554 13 N -0.720 5.720 14 C 0.121 3.879 15 C 0.013 3.987 16 C -0.521 4.521 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.078 3.922 25 N -0.525 5.525 26 C 0.047 3.953 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.397 0.603 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.022 0.978 40 H 0.022 0.978 41 H 0.262 0.738 42 H 0.043 0.957 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.676 16.766 -5.495 24.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 H 0.097 0.903 4 C -0.150 4.150 5 C -0.050 4.050 6 H 0.069 0.931 7 C -0.140 4.140 8 C -0.151 4.151 9 C -0.123 4.123 10 H 0.120 0.880 11 C 0.295 3.705 12 O -0.432 6.432 13 N -0.370 5.370 14 C -0.001 4.001 15 C -0.025 4.025 16 C -0.560 4.560 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.050 4.050 25 N -0.249 5.249 26 C -0.081 4.081 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.231 0.769 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.040 0.960 40 H 0.041 0.959 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -17.492 16.762 -4.871 24.712 hybrid contribution 0.129 -1.340 0.249 1.369 sum -17.363 15.422 -4.622 23.679 Atomic orbital electron populations 1.21863 0.94817 1.01801 1.01770 1.22134 0.95176 0.99758 0.94327 0.90251 1.22259 0.99331 0.96445 0.97000 1.22466 0.95617 0.96227 0.90676 0.93126 1.21495 0.96262 0.98456 0.97802 1.21572 1.01686 0.98448 0.93354 1.21326 0.98977 0.96544 0.95430 0.88003 1.20506 0.80940 0.84299 0.84799 1.90666 1.58412 1.66437 1.27720 1.46338 1.25884 1.32677 1.32091 1.21716 0.97618 0.85288 0.95483 1.19320 0.90292 0.96500 0.96361 1.21055 1.09044 1.13140 1.12778 0.92283 1.24998 0.96616 0.97567 0.95128 1.69952 1.17995 1.40911 1.24445 0.86513 0.77942 0.82742 0.80365 1.20562 1.21152 1.19736 1.21700 0.95114 0.91457 0.96755 1.63863 1.30863 1.26555 1.03649 1.22901 0.90895 0.97130 0.97153 0.92736 0.92571 0.92433 0.91314 0.90820 0.91190 0.90515 0.91769 0.90794 0.76887 0.92614 0.92678 0.95968 0.95934 0.92842 0.93876 0.90066 0.90252 0.94033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 8.95 37.16 0.33 -0.58 16 2 C -0.09 -0.72 3.68 -88.41 -0.33 -1.04 16 3 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.11 -0.87 6.29 -25.54 -0.16 -1.03 16 5 C 0.06 0.56 2.49 -66.94 -0.17 0.39 16 6 H 0.05 0.53 8.00 -51.93 -0.42 0.11 16 7 C -0.10 -0.94 5.64 -26.77 -0.15 -1.09 16 8 C -0.11 -1.24 5.07 -26.48 -0.13 -1.37 16 9 C -0.10 -1.30 2.69 -91.54 -0.25 -1.54 16 10 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 11 C 0.51 8.70 7.13 -10.99 -0.08 8.62 16 12 O -0.55 -11.53 15.95 5.55 0.09 -11.44 16 13 N -0.72 -12.65 5.45 -60.29 -0.33 -12.98 16 14 C 0.12 2.61 5.61 -4.04 -0.02 2.59 16 15 C 0.01 0.32 5.09 -27.88 -0.14 0.17 16 16 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 17 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 20 Si 0.90 21.47 29.54 -169.99 -5.02 16.44 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 C 0.08 1.00 4.43 -4.17 -0.02 0.99 16 25 N -0.52 -5.68 4.84 -224.48 -1.09 -6.77 16 26 C 0.05 0.44 6.24 -2.56 -0.02 0.42 16 27 H 0.05 0.36 8.13 -51.93 -0.42 -0.06 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.47 7.73 -51.93 -0.40 0.07 16 31 H 0.07 0.55 8.00 -51.93 -0.42 0.13 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.77 8.13 -51.93 -0.42 0.34 16 35 H 0.07 0.76 7.69 -51.93 -0.40 0.36 16 36 H 0.40 6.06 7.97 -40.82 -0.33 5.74 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.02 0.58 8.14 -51.92 -0.42 0.16 16 41 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.04 0.61 7.90 -51.93 -0.41 0.20 16 43 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.04 0.40 7.88 -51.93 -0.41 -0.01 16 LS Contribution 353.48 15.07 5.33 5.33 Total: -1.00 -31.08 353.48 -10.06 -41.14 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -8.24 Total: 0.51 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -1.54 Total: -6.79 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: -0.68 Total: -45.19 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.08 -10.06 -41.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346734378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.995 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds