Wall clock time and date at job start Tue Mar 31 2020 01:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.31160 * 2 1 4 4 C 1.54994 * 110.34786 * 237.81006 * 2 1 3 5 5 C 1.53261 * 104.18813 * 243.51399 * 4 2 1 6 6 H 1.09005 * 110.29635 * 90.99684 * 5 4 2 7 7 C 1.52253 * 113.89577 * 215.60358 * 5 4 2 8 8 C 1.53664 * 107.57505 * 177.23420 * 7 5 4 9 9 C 1.52817 * 110.61789 * 303.87753 * 8 7 5 10 10 H 1.09001 * 109.22940 * 293.42888 * 9 8 7 11 11 C 1.50695 * 109.23062 * 174.01526 * 9 8 7 12 12 O 1.21292 * 119.99906 * 239.99791 * 11 9 8 13 13 N 1.34767 * 120.00302 * 60.00022 * 11 9 8 14 14 C 1.46509 * 120.00320 * 180.02562 * 13 11 9 15 15 C 1.52998 * 109.47058 * 179.97438 * 14 13 11 16 16 C 1.50702 * 109.47153 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99556 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00134 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00143 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99946 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46801 * 89.99976 * 20 18 16 22 22 H 1.48498 * 109.47093 * 209.99796 * 20 18 16 23 23 H 1.48503 * 109.47121 * 330.00453 * 20 18 16 24 24 C 1.53631 * 110.69812 * 53.74048 * 9 8 7 25 25 N 1.45662 * 107.79751 * 302.62553 * 24 9 8 26 26 C 1.47093 * 116.54365 * 182.69584 * 25 24 9 27 27 H 1.09003 * 109.47425 * 180.69720 * 1 2 3 28 28 H 1.08998 * 109.47283 * 300.70038 * 1 2 3 29 29 H 1.09003 * 109.47020 * 60.70135 * 1 2 3 30 30 H 1.09000 * 110.48567 * 2.19341 * 4 2 1 31 31 H 1.08995 * 110.48368 * 124.83606 * 4 2 1 32 32 H 1.09000 * 109.83772 * 296.75260 * 7 5 4 33 33 H 1.08999 * 109.83970 * 57.65345 * 7 5 4 34 34 H 1.09005 * 109.24573 * 64.16792 * 8 7 5 35 35 H 1.08996 * 109.25108 * 183.58303 * 8 7 5 36 36 H 0.97001 * 120.00101 * 359.97438 * 13 11 9 37 37 H 1.09003 * 109.46853 * 299.99795 * 14 13 11 38 38 H 1.09000 * 109.46903 * 59.99837 * 14 13 11 39 39 H 1.08994 * 109.47785 * 300.00141 * 15 14 13 40 40 H 1.09009 * 109.46993 * 60.00169 * 15 14 13 41 41 H 0.96998 * 120.00051 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.79303 * 62.20228 * 24 9 8 43 43 H 1.09000 * 109.79677 * 182.99382 * 24 9 8 44 44 H 1.09005 * 110.60593 * 79.06012 * 26 25 24 45 45 H 1.08996 * 110.61141 * 316.08379 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9084 1.0222 0.0000 4 6 2.0689 -0.7742 -1.2298 5 6 2.8209 -1.9645 -0.6244 6 1 2.1527 -2.8192 -0.5178 7 6 4.0691 -2.3642 -1.3993 8 6 4.7418 -3.5145 -0.6340 9 6 5.0396 -3.1008 0.8066 10 1 5.7962 -2.3162 0.8057 11 6 5.5612 -4.2924 1.5675 12 8 4.9663 -4.6960 2.5443 13 7 6.6888 -4.9095 1.1626 14 6 7.1956 -6.0684 1.9020 15 6 8.4772 -6.5762 1.2382 16 6 8.9989 -7.7678 1.9991 17 1 8.4690 -8.1272 2.8689 18 6 10.1525 -8.3991 1.5849 19 7 10.7979 -7.9611 0.5261 20 14 10.7987 -9.8766 2.5277 21 1 10.2122 -11.1188 1.9636 22 1 12.2781 -9.9302 2.4105 23 1 10.4194 -9.7554 3.9583 24 6 3.7695 -2.5782 1.4951 25 7 3.2610 -1.4648 0.7055 26 6 2.0718 -0.7760 1.2299 27 1 -0.3634 -1.0276 0.0125 28 1 -0.3634 0.5247 0.8836 29 1 -0.3633 0.5029 -0.8962 30 1 1.2449 -1.1206 -1.8536 31 1 2.7484 -0.1474 -1.8073 32 1 3.7927 -2.6972 -2.3996 33 1 4.7500 -1.5157 -1.4670 34 1 4.0784 -4.3795 -0.6296 35 1 5.6744 -3.7802 -1.1316 36 1 7.1645 -4.5870 0.3812 37 1 7.4093 -5.7779 2.9306 38 1 6.4457 -6.8595 1.8960 39 1 8.2633 -6.8667 0.2097 40 1 9.2272 -5.7852 1.2438 41 1 11.6093 -8.4054 0.2345 42 1 3.0220 -3.3702 1.5409 43 1 4.0090 -2.2382 2.5027 44 1 2.3485 -0.0863 2.0274 45 1 1.3353 -1.4974 1.5834 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346734378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:59 Heat of formation + Delta-G solvation = -81.266150 kcal Electronic energy + Delta-G solvation = -22078.351724 eV Core-core repulsion = 18900.305123 eV Total energy + Delta-G solvation = -3178.046601 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.55603 -40.22689 -36.71981 -36.36696 -34.84096 -33.37191 -32.40909 -31.20680 -28.38099 -27.48071 -26.43411 -23.94485 -23.47123 -22.74257 -21.41198 -21.11214 -20.50315 -18.61697 -18.08028 -16.89549 -16.69446 -16.52340 -16.42141 -16.19138 -15.83934 -15.32757 -14.89006 -14.70875 -14.51226 -14.28213 -13.88402 -13.61381 -13.47455 -13.28604 -13.24869 -13.16273 -12.94345 -12.55714 -12.53614 -12.25087 -12.05044 -11.85005 -11.72297 -11.65661 -11.50575 -11.42804 -11.32402 -11.22498 -10.71289 -10.61573 -10.03829 -9.45074 -8.25234 -6.35757 1.40855 1.41271 1.52792 1.61272 2.18223 2.42623 3.03373 3.09369 3.51197 3.52124 3.81284 3.86747 3.98903 4.02146 4.17637 4.30146 4.37404 4.45029 4.46706 4.48196 4.55050 4.66708 4.68151 4.74446 4.78424 4.83373 4.87666 4.91064 5.00144 5.05316 5.07316 5.17125 5.25627 5.27900 5.32335 5.41629 5.46276 5.48010 5.56778 5.77399 5.96001 6.14588 6.15053 6.60150 6.77232 7.24826 7.33533 8.86555 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.050095 B = 0.002733 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.808380 B =10241.394696 C =10607.565742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 H 0.086 0.914 4 C -0.108 4.108 5 C 0.054 3.946 6 H 0.039 0.961 7 C -0.095 4.095 8 C -0.111 4.111 9 C -0.088 4.088 10 H 0.118 0.882 11 C 0.510 3.490 12 O -0.593 6.593 13 N -0.714 5.714 14 C 0.140 3.860 15 C 0.024 3.976 16 C -0.548 4.548 17 H 0.057 0.943 18 C 0.007 3.993 19 N -0.925 5.925 20 Si 0.965 3.035 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.267 1.267 24 C 0.084 3.916 25 N -0.527 5.527 26 C 0.041 3.959 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.051 0.949 35 H 0.084 0.916 36 H 0.411 0.589 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.010 0.990 40 H 0.009 0.991 41 H 0.266 0.734 42 H 0.023 0.977 43 H 0.068 0.932 44 H 0.081 0.919 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.107 17.664 -6.460 26.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 H 0.104 0.896 4 C -0.145 4.145 5 C -0.054 4.054 6 H 0.057 0.943 7 C -0.133 4.133 8 C -0.149 4.149 9 C -0.110 4.110 10 H 0.136 0.864 11 C 0.297 3.703 12 O -0.474 6.474 13 N -0.365 5.365 14 C 0.016 3.984 15 C -0.014 4.014 16 C -0.586 4.586 17 H 0.075 0.925 18 C -0.192 4.192 19 N -0.565 5.565 20 Si 0.789 3.211 21 H -0.197 1.197 22 H -0.204 1.204 23 H -0.192 1.192 24 C -0.045 4.045 25 N -0.251 5.251 26 C -0.086 4.086 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.247 0.753 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.028 0.972 40 H 0.027 0.973 41 H 0.075 0.925 42 H 0.041 0.959 43 H 0.086 0.914 44 H 0.099 0.901 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -17.932 17.685 -5.862 25.859 hybrid contribution 0.234 -1.594 0.559 1.705 sum -17.698 16.092 -5.303 24.501 Atomic orbital electron populations 1.21838 0.93831 1.01671 1.02587 1.22130 0.95955 0.99662 0.93182 0.89592 1.22264 0.99631 0.95582 0.97070 1.22568 0.95913 0.96741 0.90149 0.94303 1.21485 0.95862 0.97745 0.98210 1.21599 1.02210 0.98942 0.92158 1.21289 0.99143 0.94630 0.95928 0.86392 1.21253 0.79952 0.84796 0.84294 1.90648 1.59386 1.67752 1.29613 1.46153 1.26311 1.31722 1.32280 1.21220 0.95879 0.86335 0.94936 1.19125 0.91242 0.95422 0.95587 1.21463 1.09644 1.14339 1.13188 0.92462 1.25866 0.96791 1.00476 0.96019 1.70051 1.18456 1.42271 1.25709 0.85451 0.77465 0.79092 0.79076 1.19723 1.20408 1.19180 1.21540 0.94698 0.91624 0.96616 1.63908 1.31750 1.25439 1.04009 1.23013 0.90272 0.97077 0.98264 0.93320 0.92203 0.91213 0.90133 0.89959 0.89305 0.89796 0.92977 0.89769 0.75318 0.93731 0.93751 0.97198 0.97260 0.92493 0.95879 0.91353 0.90086 0.94742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.95 71.98 0.64 -0.87 16 2 C -0.09 -1.18 3.68 -9.36 -0.03 -1.22 16 3 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 4 C -0.11 -1.39 6.29 31.36 0.20 -1.19 16 5 C 0.05 0.95 2.49 44.40 0.11 1.06 16 6 H 0.04 0.78 8.00 -2.38 -0.02 0.76 16 7 C -0.10 -1.52 5.64 30.57 0.17 -1.35 16 8 C -0.11 -2.29 5.07 30.76 0.16 -2.13 16 9 C -0.09 -2.21 2.69 -11.39 -0.03 -2.24 16 10 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 11 C 0.51 17.49 7.13 87.66 0.63 18.12 16 12 O -0.59 -25.28 15.95 -3.07 -0.05 -25.33 16 13 N -0.71 -25.12 5.45 -463.05 -2.53 -27.65 16 14 C 0.14 6.14 5.61 86.38 0.48 6.63 16 15 C 0.02 1.20 5.09 29.85 0.15 1.35 16 16 C -0.55 -30.87 9.11 25.60 0.23 -30.64 16 17 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 18 C 0.01 0.41 5.46 84.65 0.46 0.88 16 19 N -0.93 -54.29 13.29 21.45 0.28 -54.01 16 20 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 24 C 0.08 2.17 4.43 86.75 0.38 2.56 16 25 N -0.53 -10.87 4.84 -864.13 -4.18 -15.05 16 26 C 0.04 0.73 6.24 87.02 0.54 1.28 16 27 H 0.05 0.58 8.13 -2.39 -0.02 0.56 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 0.88 7.73 -2.39 -0.02 0.86 16 31 H 0.08 0.96 8.00 -2.39 -0.02 0.94 16 32 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.05 1.21 8.13 -2.38 -0.02 1.19 16 35 H 0.08 1.57 7.69 -2.39 -0.02 1.55 16 36 H 0.41 12.29 7.97 -92.71 -0.74 11.55 16 37 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 41 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 42 H 0.02 0.68 7.90 -2.38 -0.02 0.66 16 43 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.08 1.38 8.14 -2.38 -0.02 1.37 16 45 H 0.03 0.66 7.88 -2.39 -0.02 0.64 16 Total: -1.00 -66.63 353.48 -0.14 -66.77 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 0.20 Total: 17.20 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 4.10 Total: -7.77 kcal Atomic # 7 Polarization: -90.28 SS G_CDS: -6.42 Total: -96.71 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.05 Total: -25.33 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -66.63 -0.14 -66.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346734378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.498 kcal (2) G-P(sol) polarization free energy of solvation -66.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds