Wall clock time and date at job start Tue Mar 31 2020 02:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.79112 * 2 1 4 4 C 1.53243 * 109.62964 * 239.51570 * 2 1 3 5 5 N 1.46901 * 109.33985 * 186.46540 * 4 2 1 6 6 C 1.46904 * 110.99819 * 187.25441 * 5 4 2 7 7 C 1.52995 * 109.47431 * 76.20344 * 6 5 4 8 8 H 1.09001 * 109.73838 * 303.32906 * 7 6 5 9 9 C 1.53498 * 109.70969 * 182.72095 * 7 6 5 10 10 C 1.53256 * 108.19587 * 177.93635 * 9 7 6 11 11 C 1.50443 * 109.44304 * 46.80179 * 10 9 7 12 12 C 1.30689 * 122.49248 * 342.49577 * 11 10 9 13 13 O 1.35138 * 123.34562 * 0.45613 * 12 11 10 14 14 C 1.46897 * 111.27091 * 63.10022 * 5 4 2 15 15 C 1.53232 * 109.34038 * 296.89667 * 14 5 4 16 16 H 1.09010 * 109.62895 * 173.54214 * 15 14 5 17 17 C 1.52998 * 109.63029 * 294.11907 * 15 14 5 18 18 N 1.47079 * 109.62705 * 120.48608 * 2 1 3 19 19 C 1.36934 * 120.87994 * 350.87352 * 18 2 1 20 20 H 1.07999 * 120.00114 * 129.73068 * 19 18 2 21 21 C 1.38809 * 119.99930 * 309.72779 * 19 18 2 22 22 N 1.31616 * 119.99930 * 156.03599 * 21 19 18 23 23 Si 1.86800 * 120.00125 * 336.03219 * 21 19 18 24 24 H 1.48505 * 109.47131 * 93.65455 * 23 21 19 25 25 H 1.48501 * 109.47449 * 213.65344 * 23 21 19 26 26 H 1.48503 * 109.47076 * 333.65737 * 23 21 19 27 27 H 1.09002 * 109.47181 * 187.79738 * 1 2 3 28 28 H 1.08996 * 109.47082 * 307.80298 * 1 2 3 29 29 H 1.09006 * 109.46532 * 67.79739 * 1 2 3 30 30 H 1.08993 * 109.49513 * 66.50307 * 4 2 1 31 31 H 1.09004 * 109.49157 * 306.42156 * 4 2 1 32 32 H 1.09003 * 109.47027 * 316.20305 * 6 5 4 33 33 H 1.09004 * 109.46845 * 196.20790 * 6 5 4 34 34 H 1.09002 * 109.72425 * 58.24513 * 9 7 6 35 35 H 1.09003 * 109.72431 * 297.62204 * 9 7 6 36 36 H 1.09009 * 109.47433 * 166.79152 * 10 9 7 37 37 H 1.08994 * 109.47640 * 286.80343 * 10 9 7 38 38 H 1.07997 * 118.75559 * 162.51897 * 11 10 9 39 39 H 1.08000 * 118.32583 * 180.48012 * 12 11 10 40 40 H 1.09002 * 109.49507 * 56.85932 * 14 5 4 41 41 H 1.09004 * 109.49074 * 176.93517 * 14 5 4 42 42 H 1.09001 * 109.47425 * 179.03454 * 17 15 14 43 43 H 1.09001 * 109.47098 * 299.03170 * 17 15 14 44 44 H 1.09001 * 109.47526 * 59.02971 * 17 15 14 45 45 H 0.97008 * 120.00294 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0448 -0.7322 -1.2438 5 7 3.5055 -0.8645 -1.1608 6 6 4.0568 -1.4062 -2.4100 7 6 4.0776 -0.3093 -3.4764 8 1 3.0728 0.0907 -3.6127 9 6 4.5893 -0.8868 -4.8033 10 6 4.5469 0.2250 -5.8572 11 6 5.1479 1.4801 -5.2855 12 6 5.3088 1.6595 -4.0010 13 8 4.9623 0.7399 -3.0734 14 6 3.9015 -1.6871 -0.0101 15 6 3.4629 -0.9940 1.2842 16 1 3.6508 -1.6512 2.1334 17 6 4.2416 0.3115 1.4575 18 7 2.0240 -0.7028 1.1938 19 6 1.1671 -1.0758 2.1947 20 1 1.1794 -2.0898 2.5662 21 6 0.2828 -0.1505 2.7319 22 7 -0.8228 -0.5597 3.3172 23 14 0.6617 1.6755 2.6241 24 1 0.0137 2.2451 1.4154 25 1 0.1416 2.3613 3.8342 26 1 2.1311 1.8718 2.5369 27 1 -0.3633 -1.0182 0.1394 28 1 -0.3633 0.6299 0.8120 29 1 -0.3632 0.3884 -0.9515 30 1 1.7811 -0.1638 -2.1357 31 1 1.5923 -1.7225 -1.2962 32 1 3.4358 -2.2340 -2.7524 33 1 5.0722 -1.7620 -2.2348 34 1 3.9512 -1.7138 -5.1150 35 1 5.6137 -1.2387 -4.6807 36 1 5.1160 -0.0836 -6.7342 37 1 3.5126 0.4151 -6.1436 38 1 5.4578 2.2627 -5.9621 39 1 5.7404 2.5902 -3.6636 40 1 3.4233 -2.6642 -0.0796 41 1 4.9845 -1.8113 -0.0073 42 1 3.9154 0.8108 2.3699 43 1 5.3073 0.0927 1.5243 44 1 4.0569 0.9611 0.6020 45 1 -1.4407 0.0868 3.6929 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350329955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:07 Heat of formation + Delta-G solvation = 12.719604 kcal Electronic energy + Delta-G solvation = -23758.355353 eV Core-core repulsion = 20584.384280 eV Total energy + Delta-G solvation = -3173.971073 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.14419 -38.56449 -35.15353 -33.92630 -32.86703 -31.90703 -31.22874 -28.37744 -27.15867 -26.13807 -24.74622 -23.65914 -22.82665 -21.41318 -20.88062 -18.87181 -18.42021 -16.86569 -16.72397 -15.92677 -15.60138 -14.99292 -14.67000 -14.42999 -14.24812 -13.84913 -13.82265 -13.21420 -13.04944 -12.97558 -12.61994 -12.47250 -12.22116 -12.09286 -11.95265 -11.39415 -11.18192 -11.07498 -11.01214 -10.75841 -10.57148 -10.51268 -10.37694 -10.33125 -10.00619 -9.71143 -9.47227 -9.34822 -8.38787 -8.33536 -7.84466 -6.46760 -6.00683 -3.50362 2.28490 3.38417 3.49031 3.51661 3.62814 4.13583 4.56850 4.63184 4.76702 4.84995 5.00055 5.15908 5.17577 5.26675 5.31842 5.43384 5.53134 5.56383 5.71719 5.74462 5.78936 5.79825 5.96259 6.01557 6.07006 6.14005 6.21244 6.24335 6.34973 6.46486 6.49805 6.50511 6.57712 6.64713 6.78556 6.97769 7.09912 7.23500 7.40879 7.51417 7.61861 7.72631 8.13527 8.53538 9.08403 9.73587 10.30878 11.13478 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026371 B = 0.005014 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.527148 B = 5583.286909 C = 5683.933986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.172 3.828 3 H 0.031 0.969 4 C 0.048 3.952 5 N -0.525 5.525 6 C 0.061 3.939 7 C 0.098 3.902 8 H 0.070 0.930 9 C -0.155 4.155 10 C -0.077 4.077 11 C -0.302 4.302 12 C 0.065 3.935 13 O -0.299 6.299 14 C 0.051 3.949 15 C 0.168 3.832 16 H 0.070 0.930 17 C -0.155 4.155 18 N -0.595 5.595 19 C -0.274 4.274 20 H 0.069 0.931 21 C 0.058 3.942 22 N -0.894 5.894 23 Si 0.865 3.135 24 H -0.281 1.281 25 H -0.304 1.304 26 H -0.260 1.260 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.031 0.969 30 H 0.059 0.941 31 H 0.033 0.967 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.115 0.885 39 H 0.152 0.848 40 H 0.029 0.971 41 H 0.064 0.936 42 H 0.047 0.953 43 H 0.036 0.964 44 H 0.057 0.943 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.676 0.727 -15.876 19.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.066 3.934 3 H 0.049 0.951 4 C -0.081 4.081 5 N -0.249 5.249 6 C -0.068 4.068 7 C 0.041 3.959 8 H 0.088 0.912 9 C -0.194 4.194 10 C -0.114 4.114 11 C -0.321 4.321 12 C 0.001 3.999 13 O -0.211 6.211 14 C -0.078 4.078 15 C 0.061 3.939 16 H 0.088 0.912 17 C -0.214 4.214 18 N -0.319 5.319 19 C -0.402 4.402 20 H 0.086 0.914 21 C -0.145 4.145 22 N -0.533 5.533 23 Si 0.693 3.307 24 H -0.208 1.208 25 H -0.232 1.232 26 H -0.185 1.185 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.133 0.867 39 H 0.169 0.831 40 H 0.047 0.953 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.076 0.924 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.746 1.179 -15.465 18.869 hybrid contribution -0.308 0.418 -0.507 0.726 sum 10.438 1.597 -15.972 19.147 Atomic orbital electron populations 1.22097 0.95031 1.03677 0.99587 1.20633 0.93115 0.94051 0.85596 0.95108 1.22725 0.86527 0.99492 0.99398 1.61809 1.11181 1.50364 1.01500 1.22115 1.00679 0.93549 0.90431 1.22533 0.92562 0.87556 0.93200 0.91182 1.22264 1.02681 0.98741 0.95681 1.20275 1.00562 0.92785 0.97768 1.22413 1.12715 1.01220 0.95787 1.22092 0.96251 0.92505 0.89031 1.86089 1.61896 1.36228 1.36929 1.22601 0.98797 0.94349 0.92007 1.20750 0.85116 0.94398 0.93591 0.91173 1.22181 0.97719 0.99908 1.01558 1.44437 1.01484 1.68612 1.17387 1.18496 1.14067 0.94841 1.12837 0.91394 1.25795 0.95932 0.97736 0.94988 1.69922 1.09088 1.34601 1.39696 0.87354 0.79944 0.87394 0.75999 1.20779 1.23157 1.18456 0.91253 0.91262 0.94954 0.92292 0.94890 0.93178 0.90415 0.90417 0.90751 0.91048 0.91542 0.86693 0.83093 0.95282 0.91750 0.93371 0.94522 0.92388 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 7.74 37.16 0.29 -2.99 16 2 C 0.17 3.75 2.06 -67.49 -0.14 3.62 16 3 H 0.03 0.72 6.89 -51.93 -0.36 0.36 16 4 C 0.05 0.87 4.73 -3.70 -0.02 0.85 16 5 N -0.52 -8.83 3.98 -234.32 -0.93 -9.76 16 6 C 0.06 0.82 4.71 -3.82 -0.02 0.80 16 7 C 0.10 1.25 2.93 -26.48 -0.08 1.17 16 8 H 0.07 0.95 6.77 -51.93 -0.35 0.60 16 9 C -0.16 -1.57 5.54 -26.34 -0.15 -1.72 16 10 C -0.08 -0.74 6.23 -27.88 -0.17 -0.92 16 11 C -0.30 -3.19 9.97 -36.06 -0.36 -3.55 16 12 C 0.06 0.77 10.88 29.10 0.32 1.09 16 13 O -0.30 -4.29 9.99 -17.11 -0.17 -4.46 16 14 C 0.05 0.89 4.98 -3.71 -0.02 0.87 16 15 C 0.17 3.44 3.32 -67.50 -0.22 3.21 16 16 H 0.07 1.45 7.95 -51.92 -0.41 1.04 16 17 C -0.15 -3.04 9.18 37.16 0.34 -2.70 16 18 N -0.59 -14.02 2.01 -157.01 -0.32 -14.33 16 19 C -0.27 -7.49 8.76 -15.06 -0.13 -7.63 16 20 H 0.07 2.04 8.06 -52.49 -0.42 1.61 16 21 C 0.06 1.62 3.86 -17.43 -0.07 1.55 16 22 N -0.89 -26.52 13.97 55.49 0.78 -25.74 16 23 Si 0.86 22.12 24.63 -169.99 -4.19 17.93 16 24 H -0.28 -7.00 6.31 56.52 0.36 -6.64 16 25 H -0.30 -7.93 7.11 56.52 0.40 -7.52 16 26 H -0.26 -6.62 5.89 56.52 0.33 -6.29 16 27 H 0.07 1.65 7.67 -51.93 -0.40 1.25 16 28 H 0.07 1.72 3.03 -51.93 -0.16 1.56 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.98 6.68 -51.93 -0.35 0.63 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.63 7.99 -51.93 -0.42 0.21 16 33 H 0.08 0.99 7.76 -51.93 -0.40 0.59 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.99 7.89 -51.93 -0.41 0.58 16 42 H 0.05 1.03 6.96 -51.93 -0.36 0.67 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.06 1.19 7.08 -51.93 -0.37 0.83 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 333.07 15.07 5.02 5.02 Total: -1.00 -29.69 333.07 -8.12 -37.80 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -7.88 Total: -0.12 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -0.43 Total: -6.34 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -0.47 Total: -49.83 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.17 Total: -4.46 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.19 Total: 17.93 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.69 -8.12 -37.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350329955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.525 kcal (2) G-P(sol) polarization free energy of solvation -29.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds