Wall clock time and date at job start Tue Mar 31 2020 02:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.79112 * 2 1 4 4 C 1.53243 * 109.62964 * 239.51570 * 2 1 3 5 5 N 1.46901 * 109.33985 * 186.46540 * 4 2 1 6 6 C 1.46904 * 110.99819 * 187.25441 * 5 4 2 7 7 C 1.52995 * 109.47431 * 76.20344 * 6 5 4 8 8 H 1.09001 * 109.73838 * 303.32906 * 7 6 5 9 9 C 1.53498 * 109.70969 * 182.72095 * 7 6 5 10 10 C 1.53256 * 108.19587 * 177.93635 * 9 7 6 11 11 C 1.50443 * 109.44304 * 46.80179 * 10 9 7 12 12 C 1.30689 * 122.49248 * 342.49577 * 11 10 9 13 13 O 1.35138 * 123.34562 * 0.45613 * 12 11 10 14 14 C 1.46897 * 111.27091 * 63.10022 * 5 4 2 15 15 C 1.53232 * 109.34038 * 296.89667 * 14 5 4 16 16 H 1.09010 * 109.62895 * 173.54214 * 15 14 5 17 17 C 1.52998 * 109.63029 * 294.11907 * 15 14 5 18 18 N 1.47079 * 109.62705 * 120.48608 * 2 1 3 19 19 C 1.36934 * 120.87994 * 350.87352 * 18 2 1 20 20 H 1.07999 * 120.00114 * 129.73068 * 19 18 2 21 21 C 1.38809 * 119.99930 * 309.72779 * 19 18 2 22 22 N 1.31616 * 119.99930 * 156.03599 * 21 19 18 23 23 Si 1.86800 * 120.00125 * 336.03219 * 21 19 18 24 24 H 1.48505 * 109.47131 * 93.65455 * 23 21 19 25 25 H 1.48501 * 109.47449 * 213.65344 * 23 21 19 26 26 H 1.48503 * 109.47076 * 333.65737 * 23 21 19 27 27 H 1.09002 * 109.47181 * 187.79738 * 1 2 3 28 28 H 1.08996 * 109.47082 * 307.80298 * 1 2 3 29 29 H 1.09006 * 109.46532 * 67.79739 * 1 2 3 30 30 H 1.08993 * 109.49513 * 66.50307 * 4 2 1 31 31 H 1.09004 * 109.49157 * 306.42156 * 4 2 1 32 32 H 1.09003 * 109.47027 * 316.20305 * 6 5 4 33 33 H 1.09004 * 109.46845 * 196.20790 * 6 5 4 34 34 H 1.09002 * 109.72425 * 58.24513 * 9 7 6 35 35 H 1.09003 * 109.72431 * 297.62204 * 9 7 6 36 36 H 1.09009 * 109.47433 * 166.79152 * 10 9 7 37 37 H 1.08994 * 109.47640 * 286.80343 * 10 9 7 38 38 H 1.07997 * 118.75559 * 162.51897 * 11 10 9 39 39 H 1.08000 * 118.32583 * 180.48012 * 12 11 10 40 40 H 1.09002 * 109.49507 * 56.85932 * 14 5 4 41 41 H 1.09004 * 109.49074 * 176.93517 * 14 5 4 42 42 H 1.09001 * 109.47425 * 179.03454 * 17 15 14 43 43 H 1.09001 * 109.47098 * 299.03170 * 17 15 14 44 44 H 1.09001 * 109.47526 * 59.02971 * 17 15 14 45 45 H 0.97008 * 120.00294 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0448 -0.7322 -1.2438 5 7 3.5055 -0.8645 -1.1608 6 6 4.0568 -1.4062 -2.4100 7 6 4.0776 -0.3093 -3.4764 8 1 3.0728 0.0907 -3.6127 9 6 4.5893 -0.8868 -4.8033 10 6 4.5469 0.2250 -5.8572 11 6 5.1479 1.4801 -5.2855 12 6 5.3088 1.6595 -4.0010 13 8 4.9623 0.7399 -3.0734 14 6 3.9015 -1.6871 -0.0101 15 6 3.4629 -0.9940 1.2842 16 1 3.6508 -1.6512 2.1334 17 6 4.2416 0.3115 1.4575 18 7 2.0240 -0.7028 1.1938 19 6 1.1671 -1.0758 2.1947 20 1 1.1794 -2.0898 2.5662 21 6 0.2828 -0.1505 2.7319 22 7 -0.8228 -0.5597 3.3172 23 14 0.6617 1.6755 2.6241 24 1 0.0137 2.2451 1.4154 25 1 0.1416 2.3613 3.8342 26 1 2.1311 1.8718 2.5369 27 1 -0.3633 -1.0182 0.1394 28 1 -0.3633 0.6299 0.8120 29 1 -0.3632 0.3884 -0.9515 30 1 1.7811 -0.1638 -2.1357 31 1 1.5923 -1.7225 -1.2962 32 1 3.4358 -2.2340 -2.7524 33 1 5.0722 -1.7620 -2.2348 34 1 3.9512 -1.7138 -5.1150 35 1 5.6137 -1.2387 -4.6807 36 1 5.1160 -0.0836 -6.7342 37 1 3.5126 0.4151 -6.1436 38 1 5.4578 2.2627 -5.9621 39 1 5.7404 2.5902 -3.6636 40 1 3.4233 -2.6642 -0.0796 41 1 4.9845 -1.8113 -0.0073 42 1 3.9154 0.8108 2.3699 43 1 5.3073 0.0927 1.5243 44 1 4.0569 0.9611 0.6020 45 1 -1.4407 0.0868 3.6929 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350329955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:06 Heat of formation + Delta-G solvation = -5.958689 kcal Electronic energy + Delta-G solvation = -23759.165305 eV Core-core repulsion = 20584.384280 eV Total energy + Delta-G solvation = -3174.781025 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.10098 -40.05360 -36.69755 -34.77844 -34.48240 -33.65716 -32.55314 -30.09226 -28.32647 -27.71392 -26.21608 -24.90312 -24.07733 -22.84068 -22.36186 -20.23443 -19.73762 -18.60751 -17.70777 -17.28005 -16.88795 -16.38646 -16.20155 -15.78055 -15.66681 -15.23522 -15.02555 -14.76273 -14.43730 -14.33429 -13.97107 -13.75082 -13.63790 -13.53164 -13.28919 -13.04242 -12.77227 -12.48704 -12.37906 -12.26130 -12.17852 -11.80964 -11.76334 -11.68778 -11.57124 -11.34482 -11.25528 -11.01535 -10.45536 -9.24840 -9.17047 -8.40194 -8.19829 -5.66813 1.31977 1.41251 1.46982 1.55100 2.43897 2.61561 2.90289 3.05420 3.38923 3.79487 3.85711 4.02076 4.14140 4.20150 4.26365 4.30017 4.43160 4.48214 4.52135 4.55516 4.59900 4.63862 4.71808 4.79375 4.82664 4.84901 4.85883 4.88746 4.92599 5.01996 5.06357 5.16857 5.23492 5.33074 5.35462 5.45787 5.55605 5.63037 5.71530 5.98863 6.20366 6.24906 6.31914 6.84373 7.11488 7.65469 8.24764 8.98052 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026371 B = 0.005014 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.527148 B = 5583.286909 C = 5683.933986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.168 3.832 3 H 0.022 0.978 4 C 0.061 3.939 5 N -0.533 5.533 6 C 0.063 3.937 7 C 0.097 3.903 8 H 0.060 0.940 9 C -0.149 4.149 10 C -0.082 4.082 11 C -0.294 4.294 12 C 0.039 3.961 13 O -0.324 6.324 14 C 0.062 3.938 15 C 0.158 3.842 16 H 0.060 0.940 17 C -0.141 4.141 18 N -0.605 5.605 19 C -0.263 4.263 20 H 0.030 0.970 21 C 0.022 3.978 22 N -0.936 5.936 23 Si 0.916 3.084 24 H -0.269 1.269 25 H -0.311 1.311 26 H -0.259 1.259 27 H 0.045 0.955 28 H 0.043 0.957 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.026 0.974 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.130 0.870 39 H 0.164 0.836 40 H 0.022 0.978 41 H 0.092 0.908 42 H 0.023 0.977 43 H 0.067 0.933 44 H 0.049 0.951 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.476 1.209 -18.650 22.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.063 3.937 3 H 0.039 0.961 4 C -0.069 4.069 5 N -0.257 5.257 6 C -0.064 4.064 7 C 0.040 3.960 8 H 0.078 0.922 9 C -0.187 4.187 10 C -0.119 4.119 11 C -0.313 4.313 12 C -0.024 4.024 13 O -0.238 6.238 14 C -0.067 4.067 15 C 0.053 3.947 16 H 0.078 0.922 17 C -0.200 4.200 18 N -0.331 5.331 19 C -0.392 4.392 20 H 0.048 0.952 21 C -0.177 4.177 22 N -0.578 5.578 23 Si 0.744 3.256 24 H -0.196 1.196 25 H -0.239 1.239 26 H -0.183 1.183 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.148 0.852 39 H 0.181 0.819 40 H 0.041 0.959 41 H 0.110 0.890 42 H 0.042 0.958 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.581 1.666 -18.279 22.253 hybrid contribution -0.823 0.214 0.297 0.901 sum 11.758 1.881 -17.982 21.567 Atomic orbital electron populations 1.22008 0.95679 1.01794 1.00397 1.20679 0.92694 0.93819 0.86528 0.96065 1.22473 0.87590 0.98784 0.98005 1.61770 1.10085 1.50933 1.02878 1.22187 1.01147 0.94218 0.88883 1.22523 0.92132 0.87221 0.94084 0.92236 1.22229 1.02951 0.99228 0.94280 1.20378 1.01045 0.92282 0.98180 1.22711 1.11150 1.01809 0.95648 1.22396 0.97640 0.92927 0.89395 1.86041 1.62435 1.37079 1.38272 1.22428 1.00223 0.93410 0.90616 1.20918 0.83403 0.95056 0.95372 0.92200 1.22021 0.99377 0.98769 0.99843 1.44542 1.02556 1.68695 1.17275 1.18293 1.14411 0.93233 1.13299 0.95225 1.26176 0.95691 1.00715 0.95149 1.70013 1.10272 1.35657 1.41829 0.86525 0.79610 0.83537 0.75953 1.19554 1.23926 1.18313 0.93538 0.93846 0.91534 0.90204 0.95588 0.91807 0.89360 0.88783 0.90613 0.89354 0.91146 0.85215 0.81883 0.95945 0.89024 0.95770 0.91439 0.93164 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.25 7.74 71.98 0.56 -5.70 16 2 C 0.17 7.19 2.06 44.96 0.09 7.28 16 3 H 0.02 0.97 6.89 -2.39 -0.02 0.96 16 4 C 0.06 2.09 4.73 86.38 0.41 2.50 16 5 N -0.53 -16.60 3.98 -895.25 -3.56 -20.16 16 6 C 0.06 1.50 4.71 86.30 0.41 1.91 16 7 C 0.10 2.19 2.93 30.76 0.09 2.28 16 8 H 0.06 1.45 6.77 -2.39 -0.02 1.43 16 9 C -0.15 -2.49 5.54 30.85 0.17 -2.32 16 10 C -0.08 -1.31 6.23 29.85 0.19 -1.12 16 11 C -0.29 -5.35 9.97 25.88 0.26 -5.09 16 12 C 0.04 0.84 10.88 68.10 0.74 1.58 16 13 O -0.32 -8.56 9.99 -84.15 -0.84 -9.40 16 14 C 0.06 2.02 4.98 86.38 0.43 2.45 16 15 C 0.16 6.35 3.32 44.96 0.15 6.50 16 16 H 0.06 2.49 7.95 -2.38 -0.02 2.47 16 17 C -0.14 -5.34 9.18 71.98 0.66 -4.68 16 18 N -0.61 -28.61 2.01 -650.66 -1.31 -29.92 16 19 C -0.26 -14.80 8.76 84.03 0.74 -14.06 16 20 H 0.03 1.89 8.06 -2.91 -0.02 1.86 16 21 C 0.02 1.24 3.86 84.86 0.33 1.56 16 22 N -0.94 -57.31 13.97 21.65 0.30 -57.01 16 23 Si 0.92 46.45 24.63 68.60 1.69 48.14 16 24 H -0.27 -13.04 6.31 99.48 0.63 -12.41 16 25 H -0.31 -16.02 7.11 99.48 0.71 -15.31 16 26 H -0.26 -12.94 5.89 99.48 0.59 -12.36 16 27 H 0.05 2.23 7.67 -2.39 -0.02 2.21 16 28 H 0.04 2.14 3.03 -2.39 -0.01 2.13 16 29 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 30 H 0.08 2.43 6.68 -2.39 -0.02 2.41 16 31 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 1.37 7.99 -2.39 -0.02 1.35 16 33 H 0.09 1.93 7.76 -2.38 -0.02 1.91 16 34 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.09 1.13 8.14 -2.38 -0.02 1.12 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 39 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 40 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.09 2.50 7.89 -2.38 -0.02 2.48 16 42 H 0.02 1.00 6.96 -2.39 -0.02 0.98 16 43 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.05 1.97 7.08 -2.39 -0.02 1.96 16 45 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -65.25 333.07 2.24 -63.01 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.74 Total: 12.24 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 5.21 Total: -6.92 kcal Atomic # 7 Polarization: -102.52 SS G_CDS: -4.57 Total: -107.08 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -0.84 Total: -9.40 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.69 Total: 48.14 kcal Total: -65.25 2.24 -63.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350329955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.054 kcal (2) G-P(sol) polarization free energy of solvation -65.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds