Wall clock time and date at job start Tue Mar 31 2020 02:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.88546 * 2 1 4 4 C 1.54916 * 111.00272 * 236.11862 * 2 1 3 5 5 N 1.47418 * 104.83219 * 204.91755 * 4 2 1 6 6 C 1.34784 * 125.64906 * 204.09870 * 5 4 2 7 7 O 1.21279 * 119.99673 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00109 * 179.97438 * 6 5 4 9 9 C 1.52997 * 109.47055 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.47127 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 8 12 12 C 1.52995 * 117.49819 * 243.74850 * 11 10 9 13 13 C 1.52998 * 117.49812 * 175.08617 * 11 10 9 14 14 C 1.47028 * 108.70446 * 24.35629 * 5 4 2 15 15 C 1.54330 * 107.26341 * 358.58651 * 14 5 4 16 16 H 1.08999 * 110.85036 * 219.67208 * 15 14 5 17 17 N 1.46498 * 110.51515 * 96.45276 * 15 14 5 18 18 C 1.36938 * 120.00222 * 91.49775 * 17 15 14 19 19 H 1.07995 * 119.99720 * 0.02562 * 18 17 15 20 20 C 1.38818 * 119.99920 * 179.97438 * 18 17 15 21 21 N 1.31616 * 120.00170 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99656 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47370 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.47277 * 120.00390 * 22 20 18 25 25 H 1.48511 * 109.46810 * 239.99930 * 22 20 18 26 26 H 1.09003 * 109.47284 * 182.42345 * 1 2 3 27 27 H 1.09000 * 109.47170 * 302.42124 * 1 2 3 28 28 H 1.08999 * 109.47425 * 62.42555 * 1 2 3 29 29 H 1.09002 * 110.36202 * 86.07949 * 4 2 1 30 30 H 1.09001 * 110.45912 * 323.80372 * 4 2 1 31 31 H 1.09001 * 109.47324 * 59.99162 * 8 6 5 32 32 H 1.09004 * 109.47043 * 299.99530 * 8 6 5 33 33 H 1.09001 * 109.46832 * 59.99966 * 9 8 6 34 34 H 1.08993 * 109.47194 * 299.99487 * 9 8 6 35 35 H 1.09001 * 109.46801 * 300.00272 * 10 9 8 36 36 H 1.09001 * 109.46998 * 59.99868 * 10 9 8 37 37 H 1.08997 * 115.54794 * 29.41998 * 11 10 9 38 38 H 1.08998 * 117.50115 * 0.02562 * 12 11 10 39 39 H 1.09001 * 117.49606 * 145.02422 * 12 11 10 40 40 H 1.08997 * 117.50132 * 214.97908 * 13 11 10 41 41 H 1.09003 * 117.49974 * 0.02562 * 13 11 10 42 42 H 1.08997 * 109.88074 * 118.13046 * 14 5 4 43 43 H 1.09003 * 109.88128 * 239.29989 * 14 5 4 44 44 H 0.97006 * 120.00151 * 271.50210 * 17 15 14 45 45 H 0.97002 * 120.00069 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8062 -1.2007 5 7 3.4270 -1.2429 -0.7739 6 6 4.4476 -1.5610 -1.5947 7 8 4.3006 -1.4996 -2.7970 8 6 5.7714 -1.9930 -1.0186 9 6 6.7488 -2.2943 -2.1565 10 6 8.0931 -2.7323 -1.5715 11 6 9.0708 -3.0329 -2.7094 12 6 9.5741 -4.4712 -2.8468 13 6 10.5122 -3.3777 -2.3297 14 6 3.4657 -1.2797 0.6954 15 6 2.0862 -0.8084 1.2019 16 1 2.1922 -0.1708 2.0795 17 7 1.2268 -1.9580 1.4954 18 6 1.2058 -2.4931 2.7558 19 1 1.8224 -2.0673 3.5335 20 6 0.3911 -3.5820 3.0340 21 7 -0.3607 -4.1006 2.0864 22 14 0.3619 -4.3114 4.7535 23 1 1.2908 -3.5524 5.6290 24 1 -1.0152 -4.2291 5.3028 25 1 0.7876 -5.7330 4.6954 26 1 -0.3634 -1.0268 0.0435 27 1 -0.3633 0.5510 0.8675 28 1 -0.3634 0.4757 -0.9109 29 1 2.1559 -0.1712 -2.0838 30 1 1.4524 -1.6699 -1.4050 31 1 5.6298 -2.8894 -0.4148 32 1 6.1741 -1.1948 -0.3950 33 1 6.8905 -1.3980 -2.7605 34 1 6.3460 -3.0926 -2.7797 35 1 8.4957 -1.9337 -0.9485 36 1 7.9517 -3.6284 -0.9672 37 1 8.9140 -2.4648 -3.6262 38 1 9.2084 -5.2033 -2.1269 39 1 9.7489 -4.8491 -3.8542 40 1 11.3038 -3.0368 -2.9969 41 1 10.7640 -3.3908 -1.2692 42 1 3.6600 -2.2968 1.0357 43 1 4.2424 -0.6089 1.0628 44 1 0.6727 -2.3403 0.7970 45 1 -0.9303 -4.8614 2.2809 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484896052.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:01 Heat of formation + Delta-G solvation = -16.946712 kcal Electronic energy + Delta-G solvation = -22006.498109 eV Core-core repulsion = 18831.240607 eV Total energy + Delta-G solvation = -3175.257501 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.80679 -38.05138 -37.47921 -33.93883 -33.76631 -32.32621 -30.50748 -28.42485 -27.68937 -25.77894 -23.86488 -22.69536 -22.48243 -21.57756 -20.59667 -19.27510 -18.66834 -17.57089 -16.60627 -16.05152 -15.65787 -15.47377 -14.71266 -14.52120 -14.35189 -14.11250 -13.68162 -13.10362 -12.98868 -12.78595 -12.40170 -12.24609 -12.07405 -11.86857 -11.70879 -11.66475 -11.55235 -11.17675 -11.09729 -10.95607 -10.84426 -10.76650 -10.45136 -10.37724 -10.24652 -10.02369 -9.94796 -9.69274 -9.50341 -9.03705 -8.21246 -7.09279 -5.86507 -3.16626 2.96161 3.36469 3.37371 3.43223 3.45644 3.61402 4.43446 4.50422 4.68499 4.74215 4.80647 4.98476 5.08844 5.18113 5.19515 5.24418 5.36480 5.42639 5.51715 5.58740 5.61502 5.64771 5.68343 5.72299 5.79196 5.79926 5.90729 5.95565 5.98314 6.06408 6.17388 6.22337 6.26452 6.34257 6.35092 6.38012 6.53709 6.67410 6.74948 6.95952 7.61702 7.94002 8.31173 8.50125 9.43175 9.98011 10.32728 11.35593 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015880 B = 0.003699 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.816435 B = 7568.704305 C = 8846.440026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.077 0.923 4 C 0.114 3.886 5 N -0.609 5.609 6 C 0.524 3.476 7 O -0.558 6.558 8 C -0.136 4.136 9 C -0.099 4.099 10 C -0.090 4.090 11 C -0.150 4.150 12 C -0.182 4.182 13 C -0.185 4.185 14 C 0.071 3.929 15 C 0.172 3.828 16 H 0.073 0.927 17 N -0.712 5.712 18 C -0.246 4.246 19 H 0.073 0.927 20 C -0.009 4.009 21 N -0.929 5.929 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.292 1.292 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.054 0.946 44 H 0.387 0.613 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.685 5.763 -6.134 16.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.095 0.905 4 C -0.008 4.008 5 N -0.342 5.342 6 C 0.313 3.687 7 O -0.437 6.437 8 C -0.176 4.176 9 C -0.137 4.137 10 C -0.128 4.128 11 C -0.168 4.168 12 C -0.219 4.219 13 C -0.222 4.222 14 C -0.055 4.055 15 C 0.059 3.941 16 H 0.091 0.909 17 N -0.353 5.353 18 C -0.377 4.377 19 H 0.091 0.909 20 C -0.206 4.206 21 N -0.576 5.576 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.219 1.219 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.122 0.878 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.222 0.778 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.663 5.705 -6.610 17.065 hybrid contribution -0.175 -0.714 0.811 1.095 sum 14.488 4.990 -5.799 16.384 Atomic orbital electron populations 1.21563 0.93412 1.03525 1.00487 1.22640 0.96979 0.98408 0.95519 0.90485 1.22232 0.83117 0.98281 0.97215 1.48506 1.12041 1.65759 1.07855 1.20335 0.85164 0.77009 0.86164 1.90654 1.83633 1.54617 1.14835 1.21636 0.92890 1.03177 0.99850 1.21298 0.93075 1.02365 0.96933 1.21216 0.93985 1.01390 0.96166 1.22352 0.95036 0.98579 1.00834 1.23048 1.04378 0.92051 1.02439 1.22974 0.93311 1.04136 1.01753 1.23288 1.01438 1.02081 0.78662 1.21203 0.88283 0.89842 0.94745 0.90942 1.42467 1.48953 1.32972 1.10863 1.19281 1.20710 1.09963 0.87757 0.90930 1.24759 0.99312 0.98816 0.97684 1.69666 1.30038 1.26191 1.31725 0.86130 0.77288 0.78869 0.83922 1.20492 1.21838 1.21872 0.90826 0.92369 0.93749 0.91441 0.91403 0.88936 0.89263 0.91356 0.91153 0.91567 0.91686 0.87785 0.88749 0.89052 0.89064 0.88873 0.90519 0.92757 0.77755 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 8.98 37.16 0.33 -1.76 16 2 C -0.12 -1.81 3.52 -88.47 -0.31 -2.12 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.11 1.92 6.33 -2.53 -0.02 1.90 16 5 N -0.61 -10.29 3.33 -170.51 -0.57 -10.85 16 6 C 0.52 8.84 7.85 -10.98 -0.09 8.75 16 7 O -0.56 -11.08 16.24 5.56 0.09 -10.99 16 8 C -0.14 -1.73 4.89 -27.89 -0.14 -1.87 16 9 C -0.10 -1.17 4.46 -26.73 -0.12 -1.29 16 10 C -0.09 -0.87 5.50 -26.73 -0.15 -1.02 16 11 C -0.15 -1.39 5.73 -90.62 -0.52 -1.91 16 12 C -0.18 -1.58 10.18 -26.69 -0.27 -1.86 16 13 C -0.18 -1.51 10.25 -26.69 -0.27 -1.78 16 14 C 0.07 1.17 6.23 -3.06 -0.02 1.16 16 15 C 0.17 3.09 3.40 -66.09 -0.22 2.87 16 16 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 17 N -0.71 -16.31 4.45 -51.65 -0.23 -16.54 16 18 C -0.25 -6.33 9.96 -15.06 -0.15 -6.48 16 19 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 21 N -0.93 -26.89 13.06 55.49 0.72 -26.16 16 22 Si 0.91 21.44 29.55 -169.99 -5.02 16.41 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 26 H 0.07 1.38 6.27 -51.93 -0.33 1.05 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.10 8.04 -51.93 -0.42 0.68 16 30 H 0.07 1.25 8.04 -51.93 -0.42 0.84 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 34 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.62 7.88 -51.93 -0.41 0.21 16 37 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 38 H 0.09 0.81 8.03 -51.93 -0.42 0.39 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.08 1.41 8.04 -51.93 -0.42 0.99 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.39 9.62 6.25 -40.82 -0.25 9.36 16 45 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 363.18 15.07 5.47 5.47 Total: -1.00 -29.78 363.18 -9.68 -39.47 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -8.11 Total: 8.94 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -2.04 Total: -5.74 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.07 Total: -53.56 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.78 -9.68 -39.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484896052.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.518 kcal (2) G-P(sol) polarization free energy of solvation -29.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds