Wall clock time and date at job start Tue Mar 31 2020 01:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 115.55681 * 2 1 4 4 C 1.53000 * 117.49934 * 145.68781 * 2 1 3 5 5 C 1.52990 * 60.00172 * 107.48833 * 4 2 1 6 6 H 1.09001 * 117.50410 * 252.48426 * 5 4 2 7 7 C 1.50706 * 117.50056 * 107.48674 * 5 4 2 8 8 O 1.21285 * 119.99924 * 291.39494 * 7 5 4 9 9 N 1.34769 * 120.00138 * 111.38694 * 7 5 4 10 10 C 1.46929 * 120.63293 * 180.02562 * 9 7 5 11 11 C 1.53190 * 108.77391 * 233.59239 * 10 9 7 12 12 C 1.53045 * 109.31446 * 305.36264 * 11 10 9 13 13 C 1.53001 * 109.45819 * 181.38650 * 12 11 10 14 14 N 1.46503 * 109.47009 * 174.99853 * 13 12 11 15 15 C 1.46500 * 120.00289 * 270.00358 * 14 13 12 16 16 C 1.36936 * 119.99518 * 89.99808 * 14 13 12 17 17 H 1.07998 * 120.00088 * 20.14092 * 16 14 13 18 18 C 1.38821 * 119.99722 * 200.13412 * 16 14 13 19 19 N 1.31615 * 120.00063 * 15.10809 * 18 16 14 20 20 Si 1.86795 * 119.99803 * 195.10975 * 18 16 14 21 21 H 1.48506 * 109.47375 * 84.99948 * 20 18 16 22 22 H 1.48504 * 109.47099 * 205.00189 * 20 18 16 23 23 H 1.48502 * 109.47294 * 324.99997 * 20 18 16 24 24 C 1.53035 * 109.53781 * 61.36780 * 12 11 10 25 25 C 1.46933 * 120.63201 * 359.97438 * 9 7 5 26 26 H 1.09004 * 109.46655 * 205.69068 * 1 2 3 27 27 H 1.08996 * 109.47059 * 325.68730 * 1 2 3 28 28 H 1.08991 * 109.46895 * 85.69169 * 1 2 3 29 29 H 1.08998 * 117.49999 * 359.97438 * 4 2 1 30 30 H 1.09004 * 117.51691 * 214.97767 * 4 2 1 31 31 H 1.08998 * 109.58771 * 113.80541 * 10 9 7 32 32 H 1.08996 * 109.58294 * 353.37761 * 10 9 7 33 33 H 1.09000 * 109.49796 * 185.41146 * 11 10 9 34 34 H 1.09004 * 109.50266 * 65.31862 * 11 10 9 35 35 H 1.08994 * 109.45650 * 301.35916 * 12 11 10 36 36 H 1.08997 * 109.47185 * 55.00285 * 13 12 11 37 37 H 1.08999 * 109.47470 * 295.00197 * 13 12 11 38 38 H 1.09005 * 109.47301 * 95.10162 * 15 14 13 39 39 H 1.09000 * 109.47343 * 215.10108 * 15 14 13 40 40 H 1.09005 * 109.46870 * 335.10411 * 15 14 13 41 41 H 0.96999 * 120.00199 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.49728 * 58.58770 * 24 12 11 43 43 H 1.08993 * 109.50267 * 178.68538 * 24 12 11 44 44 H 1.08999 * 109.58694 * 246.20122 * 25 9 7 45 45 H 1.09007 * 109.58091 * 6.61837 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1210 0.7650 5 6 2.2365 -1.1211 -0.7649 6 1 1.6116 -1.8588 -1.2682 7 6 3.5293 -0.7811 -1.4608 8 8 3.9719 0.3465 -1.4010 9 7 4.1937 -1.7302 -2.1494 10 6 5.4555 -1.4142 -2.8327 11 6 5.3410 -1.8380 -4.3003 12 6 4.9401 -3.3133 -4.3714 13 6 4.8585 -3.7493 -5.8357 14 7 4.5922 -5.1883 -5.9026 15 6 5.7065 -6.1387 -5.9368 16 6 3.3016 -5.6450 -5.9331 17 1 2.5017 -4.9838 -6.2318 18 6 3.0215 -6.9581 -5.5802 19 7 3.9217 -7.6739 -4.9404 20 14 1.3668 -7.7089 -6.0134 21 1 1.4122 -8.2410 -7.3991 22 1 1.0619 -8.8135 -5.0687 23 1 0.3109 -6.6693 -5.9167 24 6 3.5757 -3.5055 -3.7054 25 6 3.6705 -3.1008 -2.2304 26 1 -0.3633 -0.9261 0.4455 27 1 -0.3633 0.8488 0.5793 28 1 -0.3633 0.0772 -1.0247 29 1 1.6113 -1.8582 1.2687 30 1 3.1717 -0.8754 1.2684 31 1 6.2735 -1.9565 -2.3585 32 1 5.6434 -0.3421 -2.7755 33 1 6.3019 -1.6979 -4.7954 34 1 4.5838 -1.2309 -4.7964 35 1 5.6851 -3.9173 -3.8536 36 1 5.8036 -3.5312 -6.3330 37 1 4.0534 -3.2073 -6.3319 38 1 5.9157 -6.4900 -4.9263 39 1 5.4418 -6.9866 -6.5686 40 1 6.5914 -5.6468 -6.3409 41 1 3.7259 -8.5913 -4.6934 42 1 2.8351 -2.8827 -4.2071 43 1 3.2801 -4.5522 -3.7770 44 1 4.3433 -3.7802 -1.7071 45 1 2.6806 -3.1415 -1.7757 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494206214.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:19 Heat of formation + Delta-G solvation = 1.664393 kcal Electronic energy + Delta-G solvation = -22888.570202 eV Core-core repulsion = 19714.119739 eV Total energy + Delta-G solvation = -3174.450463 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.24595 -38.03645 -36.60346 -35.40220 -32.90772 -30.99921 -30.54607 -28.88304 -26.99910 -25.88227 -24.54172 -23.10667 -22.52583 -21.09099 -20.58523 -19.61291 -18.63295 -17.22868 -16.66441 -15.95863 -15.16749 -14.87664 -14.45678 -14.12687 -13.93665 -13.80972 -13.41617 -13.33846 -13.27177 -12.95024 -12.62450 -12.61412 -12.03549 -11.97218 -11.69664 -11.53669 -11.25098 -10.93103 -10.87235 -10.73517 -10.49515 -10.42237 -10.36552 -10.17273 -10.07095 -9.95148 -9.77015 -9.66512 -9.51435 -8.51471 -8.40465 -6.76828 -5.73172 -3.15279 2.58197 3.12239 3.36388 3.43644 3.44168 3.74084 4.46003 4.49313 4.65922 4.69787 4.97156 5.16602 5.19325 5.23327 5.31729 5.40774 5.51511 5.55858 5.56721 5.57850 5.60672 5.77344 5.81129 5.84855 5.89003 5.92587 6.04731 6.18106 6.22697 6.25036 6.39712 6.54211 6.57775 6.71353 6.74296 6.78131 7.11247 7.23675 7.38658 7.60199 7.72165 7.80141 8.31793 8.38301 9.23543 9.88301 10.37067 11.31520 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017674 B = 0.004711 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.863437 B = 5941.736759 C = 7050.292169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.124 4.124 3 H 0.115 0.885 4 C -0.149 4.149 5 C -0.190 4.190 6 H 0.126 0.874 7 C 0.544 3.456 8 O -0.556 6.556 9 N -0.601 5.601 10 C 0.114 3.886 11 C -0.129 4.129 12 C -0.104 4.104 13 C 0.157 3.843 14 N -0.602 5.602 15 C 0.164 3.836 16 C -0.246 4.246 17 H 0.067 0.933 18 C 0.001 3.999 19 N -0.907 5.907 20 Si 0.898 3.102 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.281 1.281 24 C -0.121 4.121 25 C 0.105 3.895 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.036 0.964 37 H 0.041 0.959 38 H 0.028 0.972 39 H 0.041 0.959 40 H -0.004 1.004 41 H 0.251 0.749 42 H 0.052 0.948 43 H 0.109 0.891 44 H 0.067 0.933 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.655 11.047 8.285 13.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 H 0.133 0.867 4 C -0.186 4.186 5 C -0.211 4.211 6 H 0.144 0.856 7 C 0.332 3.668 8 O -0.436 6.436 9 N -0.333 5.333 10 C -0.009 4.009 11 C -0.168 4.168 12 C -0.126 4.126 13 C 0.030 3.970 14 N -0.325 5.325 15 C 0.019 3.981 16 C -0.375 4.375 17 H 0.085 0.915 18 C -0.197 4.197 19 N -0.552 5.552 20 Si 0.728 3.272 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.206 1.206 24 C -0.159 4.159 25 C -0.017 4.017 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.122 0.878 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.046 0.954 39 H 0.060 0.940 40 H 0.014 0.986 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.128 0.872 44 H 0.085 0.915 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.415 11.425 8.339 14.215 hybrid contribution -0.836 -0.765 -0.228 1.156 sum -2.252 10.660 8.110 13.582 Atomic orbital electron populations 1.21398 0.92315 1.02106 1.02236 1.22355 0.95132 0.95009 1.01744 0.86694 1.23070 1.02988 1.01531 0.91029 1.22359 0.98070 1.05011 0.95674 0.85596 1.19622 0.84565 0.84279 0.78324 1.90637 1.69062 1.21122 1.62743 1.48126 1.23754 1.10828 1.50611 1.21592 0.84931 1.01563 0.92787 1.21982 1.01593 0.98192 0.94984 1.21803 0.97044 0.93134 1.00601 1.20845 0.97847 0.85927 0.92391 1.43976 1.03269 0.99623 1.85623 1.20777 0.86239 0.91599 0.99491 1.19143 0.84670 0.95574 1.38162 0.91486 1.24907 0.97448 0.98197 0.99198 1.70077 1.34259 1.09430 1.41449 0.86373 0.83951 0.78956 0.77880 1.21590 1.21844 1.20639 1.21942 0.97357 1.04581 0.91990 1.21989 0.99167 0.81129 0.99389 0.92312 0.91832 0.91905 0.87832 0.88475 0.91863 0.89725 0.91345 0.92066 0.91802 0.94591 0.94042 0.95368 0.93984 0.98574 0.93833 0.92950 0.87229 0.91468 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 10.19 37.16 0.38 -0.69 16 2 C -0.12 -1.35 5.92 -90.62 -0.54 -1.89 16 3 H 0.12 1.41 7.67 -51.93 -0.40 1.01 16 4 C -0.15 -1.53 9.88 -26.74 -0.26 -1.80 16 5 C -0.19 -2.35 4.85 -91.77 -0.44 -2.79 16 6 H 0.13 1.45 6.56 -51.93 -0.34 1.11 16 7 C 0.54 8.41 7.48 -10.99 -0.08 8.33 16 8 O -0.56 -10.15 15.67 5.55 0.09 -10.06 16 9 N -0.60 -9.03 2.97 -172.72 -0.51 -9.54 16 10 C 0.11 1.64 6.43 -3.71 -0.02 1.62 16 11 C -0.13 -1.88 5.36 -26.61 -0.14 -2.02 16 12 C -0.10 -1.81 2.36 -90.58 -0.21 -2.02 16 13 C 0.16 3.08 5.21 -4.04 -0.02 3.06 16 14 N -0.60 -14.36 2.80 -181.11 -0.51 -14.87 16 15 C 0.16 3.91 9.02 59.85 0.54 4.45 16 16 C -0.25 -6.34 7.58 -15.06 -0.11 -6.46 16 17 H 0.07 1.72 7.86 -52.49 -0.41 1.31 16 18 C 0.00 0.01 5.06 -17.43 -0.09 -0.07 16 19 N -0.91 -25.24 10.66 55.49 0.59 -24.65 16 20 Si 0.90 21.11 29.58 -169.99 -5.03 16.08 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C -0.12 -2.12 4.96 -26.58 -0.13 -2.25 16 25 C 0.11 1.56 6.35 -3.68 -0.02 1.54 16 26 H 0.06 0.46 7.90 -51.93 -0.41 0.05 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.10 0.88 8.05 -51.93 -0.42 0.46 16 30 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.26 7.00 -51.93 -0.36 0.90 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.04 0.66 7.86 -51.93 -0.41 0.25 16 37 H 0.04 0.82 8.03 -51.93 -0.42 0.40 16 38 H 0.03 0.72 7.41 -51.93 -0.38 0.34 16 39 H 0.04 1.09 7.20 -51.93 -0.37 0.71 16 40 H 0.00 -0.09 7.84 -51.93 -0.41 -0.50 16 41 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.11 2.35 6.26 -51.93 -0.32 2.02 16 44 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.08 1.05 5.51 -51.92 -0.29 0.76 16 LS Contribution 350.38 15.07 5.28 5.28 Total: -1.00 -29.25 350.38 -9.14 -38.39 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -7.88 Total: 0.35 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -1.17 Total: -0.99 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: -0.43 Total: -49.05 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.25 -9.14 -38.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494206214.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.057 kcal (2) G-P(sol) polarization free energy of solvation -29.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds