Wall clock time and date at job start Tue Mar 31 2020 01:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 115.55681 * 2 1 4 4 C 1.53000 * 117.49934 * 145.68781 * 2 1 3 5 5 C 1.52990 * 60.00172 * 107.48833 * 4 2 1 6 6 H 1.09001 * 117.50410 * 252.48426 * 5 4 2 7 7 C 1.50706 * 117.50056 * 107.48674 * 5 4 2 8 8 O 1.21285 * 119.99924 * 291.39494 * 7 5 4 9 9 N 1.34769 * 120.00138 * 111.38694 * 7 5 4 10 10 C 1.46929 * 120.63293 * 180.02562 * 9 7 5 11 11 C 1.53190 * 108.77391 * 233.59239 * 10 9 7 12 12 C 1.53045 * 109.31446 * 305.36264 * 11 10 9 13 13 C 1.53001 * 109.45819 * 181.38650 * 12 11 10 14 14 N 1.46503 * 109.47009 * 174.99853 * 13 12 11 15 15 C 1.46500 * 120.00289 * 270.00358 * 14 13 12 16 16 C 1.36936 * 119.99518 * 89.99808 * 14 13 12 17 17 H 1.07998 * 120.00088 * 20.14092 * 16 14 13 18 18 C 1.38821 * 119.99722 * 200.13412 * 16 14 13 19 19 N 1.31615 * 120.00063 * 15.10809 * 18 16 14 20 20 Si 1.86795 * 119.99803 * 195.10975 * 18 16 14 21 21 H 1.48506 * 109.47375 * 84.99948 * 20 18 16 22 22 H 1.48504 * 109.47099 * 205.00189 * 20 18 16 23 23 H 1.48502 * 109.47294 * 324.99997 * 20 18 16 24 24 C 1.53035 * 109.53781 * 61.36780 * 12 11 10 25 25 C 1.46933 * 120.63201 * 359.97438 * 9 7 5 26 26 H 1.09004 * 109.46655 * 205.69068 * 1 2 3 27 27 H 1.08996 * 109.47059 * 325.68730 * 1 2 3 28 28 H 1.08991 * 109.46895 * 85.69169 * 1 2 3 29 29 H 1.08998 * 117.49999 * 359.97438 * 4 2 1 30 30 H 1.09004 * 117.51691 * 214.97767 * 4 2 1 31 31 H 1.08998 * 109.58771 * 113.80541 * 10 9 7 32 32 H 1.08996 * 109.58294 * 353.37761 * 10 9 7 33 33 H 1.09000 * 109.49796 * 185.41146 * 11 10 9 34 34 H 1.09004 * 109.50266 * 65.31862 * 11 10 9 35 35 H 1.08994 * 109.45650 * 301.35916 * 12 11 10 36 36 H 1.08997 * 109.47185 * 55.00285 * 13 12 11 37 37 H 1.08999 * 109.47470 * 295.00197 * 13 12 11 38 38 H 1.09005 * 109.47301 * 95.10162 * 15 14 13 39 39 H 1.09000 * 109.47343 * 215.10108 * 15 14 13 40 40 H 1.09005 * 109.46870 * 335.10411 * 15 14 13 41 41 H 0.96999 * 120.00199 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.49728 * 58.58770 * 24 12 11 43 43 H 1.08993 * 109.50267 * 178.68538 * 24 12 11 44 44 H 1.08999 * 109.58694 * 246.20122 * 25 9 7 45 45 H 1.09007 * 109.58091 * 6.61837 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1210 0.7650 5 6 2.2365 -1.1211 -0.7649 6 1 1.6116 -1.8588 -1.2682 7 6 3.5293 -0.7811 -1.4608 8 8 3.9719 0.3465 -1.4010 9 7 4.1937 -1.7302 -2.1494 10 6 5.4555 -1.4142 -2.8327 11 6 5.3410 -1.8380 -4.3003 12 6 4.9401 -3.3133 -4.3714 13 6 4.8585 -3.7493 -5.8357 14 7 4.5922 -5.1883 -5.9026 15 6 5.7065 -6.1387 -5.9368 16 6 3.3016 -5.6450 -5.9331 17 1 2.5017 -4.9838 -6.2318 18 6 3.0215 -6.9581 -5.5802 19 7 3.9217 -7.6739 -4.9404 20 14 1.3668 -7.7089 -6.0134 21 1 1.4122 -8.2410 -7.3991 22 1 1.0619 -8.8135 -5.0687 23 1 0.3109 -6.6693 -5.9167 24 6 3.5757 -3.5055 -3.7054 25 6 3.6705 -3.1008 -2.2304 26 1 -0.3633 -0.9261 0.4455 27 1 -0.3633 0.8488 0.5793 28 1 -0.3633 0.0772 -1.0247 29 1 1.6113 -1.8582 1.2687 30 1 3.1717 -0.8754 1.2684 31 1 6.2735 -1.9565 -2.3585 32 1 5.6434 -0.3421 -2.7755 33 1 6.3019 -1.6979 -4.7954 34 1 4.5838 -1.2309 -4.7964 35 1 5.6851 -3.9173 -3.8536 36 1 5.8036 -3.5312 -6.3330 37 1 4.0534 -3.2073 -6.3319 38 1 5.9157 -6.4900 -4.9263 39 1 5.4418 -6.9866 -6.5686 40 1 6.5914 -5.6468 -6.3409 41 1 3.7259 -8.5913 -4.6934 42 1 2.8351 -2.8827 -4.2071 43 1 3.2801 -4.5522 -3.7770 44 1 4.3433 -3.7802 -1.7071 45 1 2.6806 -3.1415 -1.7757 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494206214.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:18 Heat of formation + Delta-G solvation = -13.234654 kcal Electronic energy + Delta-G solvation = -22889.216274 eV Core-core repulsion = 19714.119739 eV Total energy + Delta-G solvation = -3175.096534 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.42515 -39.30556 -37.75359 -37.02203 -34.45559 -32.65242 -31.99220 -29.70085 -28.46617 -27.84926 -25.80093 -24.48200 -23.84492 -22.43289 -21.72242 -20.94304 -19.81711 -18.62783 -18.36980 -17.13452 -16.78698 -16.31327 -15.69730 -15.56145 -15.37078 -14.97043 -14.93876 -14.83112 -14.38961 -14.12263 -13.94410 -13.63345 -13.56621 -13.15177 -13.00699 -12.89671 -12.77684 -12.48732 -12.33899 -12.18631 -12.16919 -12.02439 -11.89944 -11.74409 -11.34745 -11.24798 -11.24158 -10.92603 -10.74500 -10.51117 -9.66398 -8.72001 -7.75031 -5.18168 1.44168 1.48694 1.51799 1.57777 1.97734 2.56221 2.83184 3.37622 3.43919 3.70199 3.75476 3.84706 3.88989 4.06095 4.12693 4.17839 4.22531 4.40863 4.41566 4.54306 4.59809 4.70462 4.79849 4.82707 4.86261 4.88364 4.91096 4.94004 5.02360 5.08836 5.10588 5.12868 5.19545 5.25244 5.40142 5.41109 5.46012 5.61990 5.71172 5.75248 5.79301 6.38865 6.39887 7.11990 7.22828 7.95836 8.39479 9.28376 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017674 B = 0.004711 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.863437 B = 5941.736759 C = 7050.292169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.122 4.122 3 H 0.097 0.903 4 C -0.134 4.134 5 C -0.206 4.206 6 H 0.137 0.863 7 C 0.539 3.461 8 O -0.589 6.589 9 N -0.602 5.602 10 C 0.112 3.888 11 C -0.116 4.116 12 C -0.095 4.095 13 C 0.154 3.846 14 N -0.616 5.616 15 C 0.178 3.822 16 C -0.241 4.241 17 H 0.067 0.933 18 C -0.048 4.048 19 N -0.935 5.935 20 Si 0.954 3.046 21 H -0.292 1.292 22 H -0.298 1.298 23 H -0.270 1.270 24 C -0.113 4.113 25 C 0.115 3.885 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.129 0.871 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.041 0.959 38 H 0.005 0.995 39 H 0.014 0.986 40 H 0.026 0.974 41 H 0.245 0.755 42 H 0.049 0.951 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.449 12.030 8.844 15.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 H 0.115 0.885 4 C -0.171 4.171 5 C -0.227 4.227 6 H 0.154 0.846 7 C 0.329 3.671 8 O -0.471 6.471 9 N -0.333 5.333 10 C -0.010 4.010 11 C -0.154 4.154 12 C -0.116 4.116 13 C 0.028 3.972 14 N -0.339 5.339 15 C 0.032 3.968 16 C -0.371 4.371 17 H 0.085 0.915 18 C -0.243 4.243 19 N -0.583 5.583 20 Si 0.783 3.217 21 H -0.220 1.220 22 H -0.224 1.224 23 H -0.195 1.195 24 C -0.151 4.151 25 C -0.007 4.007 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.147 0.853 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.023 0.977 39 H 0.033 0.967 40 H 0.045 0.955 41 H 0.054 0.946 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.213 12.436 8.888 15.445 hybrid contribution -0.538 -0.991 -0.433 1.208 sum -2.751 11.445 8.455 14.493 Atomic orbital electron populations 1.21408 0.90417 1.03389 1.02467 1.22404 0.96491 0.94010 1.01199 0.88483 1.23182 1.02979 1.01484 0.89438 1.22389 0.96940 1.06468 0.96889 0.84576 1.20163 0.85283 0.83704 0.77966 1.90617 1.70148 1.22365 1.63953 1.48188 1.23854 1.10755 1.50539 1.21628 0.85182 1.01530 0.92651 1.21856 1.02516 0.95661 0.95390 1.21606 0.96587 0.94801 0.98630 1.21003 0.98679 0.83523 0.93954 1.44183 1.02654 1.01342 1.85684 1.20524 0.87346 0.91200 0.97694 1.19335 0.85548 0.95543 1.36693 0.91502 1.25508 1.00206 0.98790 0.99817 1.70224 1.35827 1.09219 1.43031 0.85482 0.81135 0.78107 0.76946 1.21984 1.22435 1.19480 1.21752 0.97306 1.02009 0.94043 1.21864 1.00358 0.80986 0.97470 0.90991 0.90625 0.92185 0.85323 0.89062 0.90911 0.89989 0.89288 0.92334 0.93200 0.92802 0.94069 0.97701 0.96726 0.95515 0.94575 0.93247 0.91084 0.91526 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 10.19 71.98 0.73 -1.05 16 2 C -0.12 -2.46 5.92 -10.79 -0.06 -2.52 16 3 H 0.10 2.32 7.67 -2.39 -0.02 2.30 16 4 C -0.13 -2.44 9.88 30.59 0.30 -2.14 16 5 C -0.21 -4.72 4.85 -11.54 -0.06 -4.78 16 6 H 0.14 2.81 6.56 -2.39 -0.02 2.80 16 7 C 0.54 16.08 7.48 87.66 0.66 16.73 16 8 O -0.59 -21.21 15.67 -3.05 -0.05 -21.26 16 9 N -0.60 -17.28 2.97 -818.77 -2.43 -19.72 16 10 C 0.11 3.08 6.43 86.36 0.56 3.63 16 11 C -0.12 -3.15 5.36 30.67 0.16 -2.98 16 12 C -0.10 -3.19 2.36 -10.77 -0.03 -3.21 16 13 C 0.15 5.84 5.21 86.38 0.45 6.29 16 14 N -0.62 -29.17 2.80 -726.91 -2.04 -31.21 16 15 C 0.18 8.50 9.02 127.77 1.15 9.66 16 16 C -0.24 -12.42 7.58 84.04 0.64 -11.78 16 17 H 0.07 3.40 7.86 -2.91 -0.02 3.38 16 18 C -0.05 -2.58 5.06 84.86 0.43 -2.15 16 19 N -0.94 -53.08 10.66 21.65 0.23 -52.85 16 20 Si 0.95 43.58 29.58 68.60 2.03 45.61 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 C -0.11 -3.90 4.96 30.69 0.15 -3.74 16 25 C 0.12 3.28 6.35 86.38 0.55 3.83 16 26 H 0.07 0.89 7.90 -2.39 -0.02 0.87 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.13 1.72 8.05 -2.39 -0.02 1.70 16 30 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.08 2.34 7.00 -2.39 -0.02 2.32 16 33 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.05 1.84 7.86 -2.39 -0.02 1.83 16 37 H 0.04 1.56 8.03 -2.39 -0.02 1.54 16 38 H 0.00 0.25 7.41 -2.38 -0.02 0.23 16 39 H 0.01 0.74 7.20 -2.39 -0.02 0.73 16 40 H 0.03 1.09 7.84 -2.38 -0.02 1.07 16 41 H 0.24 13.70 8.31 -92.71 -0.77 12.93 16 42 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.07 3.06 6.26 -2.39 -0.01 3.05 16 44 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.10 2.43 5.51 -2.38 -0.01 2.42 16 Total: -1.00 -63.07 350.38 4.32 -58.75 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.94 Total: 14.89 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 5.64 Total: 5.78 kcal Atomic # 7 Polarization: -99.54 SS G_CDS: -4.24 Total: -103.78 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.05 Total: -21.26 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -63.07 4.32 -58.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494206214.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.517 kcal (2) G-P(sol) polarization free energy of solvation -63.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds