Wall clock time and date at job start Tue Mar 31 2020 01:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00116 * 2 1 4 4 C 1.50702 * 120.00044 * 179.97438 * 2 1 3 5 5 C 1.53005 * 109.47050 * 95.00342 * 4 2 1 6 6 C 1.50692 * 109.47439 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99834 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00201 * 179.97438 * 6 5 4 9 9 C 1.46502 * 119.99840 * 180.02562 * 8 6 5 10 10 H 1.09004 * 109.45848 * 324.96867 * 9 8 6 11 11 C 1.53034 * 109.46131 * 84.93493 * 9 8 6 12 12 C 1.53196 * 109.31415 * 181.38527 * 11 9 8 13 13 N 1.46927 * 108.77176 * 305.36121 * 12 11 9 14 14 C 1.36930 * 120.62911 * 233.62745 * 13 12 11 15 15 H 1.07998 * 119.99810 * 150.14780 * 14 13 12 16 16 C 1.38809 * 120.00194 * 330.14578 * 14 13 12 17 17 N 1.31614 * 120.00010 * 344.49920 * 16 14 13 18 18 Si 1.86800 * 119.99979 * 164.50361 * 16 14 13 19 19 H 1.48499 * 109.47538 * 89.99879 * 18 16 14 20 20 H 1.48509 * 109.46963 * 209.99990 * 18 16 14 21 21 H 1.48496 * 109.47074 * 329.99645 * 18 16 14 22 22 C 1.46924 * 118.73847 * 53.60952 * 13 12 11 23 23 H 1.09009 * 109.70827 * 66.24612 * 22 13 12 24 24 C 1.52994 * 109.58753 * 186.60240 * 22 13 12 25 25 C 1.53044 * 109.45563 * 205.00172 * 9 8 6 26 26 H 1.08000 * 120.00156 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.99875 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47124 * 239.99810 * 3 2 1 29 29 H 1.09001 * 109.46888 * 359.97438 * 3 2 1 30 30 H 1.08998 * 109.46982 * 119.99605 * 3 2 1 31 31 H 1.08992 * 109.47238 * 335.00600 * 4 2 1 32 32 H 1.08999 * 109.47150 * 215.00088 * 4 2 1 33 33 H 1.09005 * 109.47182 * 300.00536 * 5 4 2 34 34 H 1.09002 * 109.47067 * 59.99507 * 5 4 2 35 35 H 0.96996 * 119.99827 * 359.97438 * 8 6 5 36 36 H 1.09007 * 109.49731 * 301.32909 * 11 9 8 37 37 H 1.08998 * 109.50160 * 61.43076 * 11 9 8 38 38 H 1.08996 * 109.59001 * 185.57455 * 12 11 9 39 39 H 1.09005 * 109.58592 * 65.14401 * 12 11 9 40 40 H 0.97006 * 120.00227 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.47288 * 179.28864 * 24 22 13 42 42 H 1.09003 * 109.47445 * 299.29054 * 24 22 13 43 43 H 1.08996 * 109.47350 * 59.28631 * 24 22 13 44 44 H 1.08995 * 109.49433 * 298.56225 * 25 9 8 45 45 H 1.08992 * 109.50119 * 58.66374 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4275 -1.6845 -1.4363 6 6 3.1815 -2.9892 -1.4358 7 8 3.4062 -3.5593 -0.3891 8 7 3.6062 -3.5226 -2.5983 9 6 4.3388 -4.7913 -2.5978 10 1 4.9661 -4.8480 -1.7081 11 6 3.3442 -5.9544 -2.5952 12 6 4.1133 -7.2788 -2.5596 13 7 5.0663 -7.3023 -3.6777 14 6 5.0757 -8.3455 -4.5646 15 1 5.3794 -8.1816 -5.5879 16 6 4.6949 -9.6138 -4.1483 17 7 4.6201 -9.8899 -2.8636 18 14 4.2885 -10.9286 -5.4114 19 1 5.5209 -11.6825 -5.7553 20 1 3.2789 -11.8609 -4.8483 21 1 3.7426 -10.2879 -6.6347 22 6 6.0086 -6.1849 -3.8264 23 1 6.7057 -6.1779 -2.9884 24 6 6.7834 -6.3382 -5.1367 25 6 5.2182 -4.8727 -3.8477 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 2.6902 1.3628 -0.8899 29 1 1.3552 2.1336 -0.0005 30 1 2.6901 1.3628 0.8900 31 1 1.4386 -2.0852 0.4351 32 1 2.9742 -1.1986 0.5900 33 1 1.5168 -1.7909 -2.0258 34 1 3.0523 -0.9043 -1.8709 35 1 3.4262 -3.0668 -3.4354 36 1 2.7028 -5.8826 -1.7167 37 1 2.7331 -5.9126 -3.4968 38 1 3.4148 -8.1098 -2.6573 39 1 4.6541 -7.3621 -1.6169 40 1 4.3544 -10.7764 -2.5727 41 1 7.4728 -5.5017 -5.2512 42 1 7.3451 -7.2722 -5.1196 43 1 6.0844 -6.3499 -5.9729 44 1 4.5895 -4.8412 -4.7375 45 1 5.9106 -4.0311 -3.8608 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502934884.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:08 Heat of formation + Delta-G solvation = -20.551937 kcal Electronic energy + Delta-G solvation = -22293.636592 eV Core-core repulsion = 19118.222756 eV Total energy + Delta-G solvation = -3175.413835 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.76533 -37.77622 -36.50890 -34.51719 -32.42661 -31.76197 -30.88506 -29.37781 -27.50881 -26.39404 -25.22984 -24.14879 -21.96770 -20.89533 -19.98384 -19.14874 -18.59494 -16.90248 -16.24184 -15.79627 -15.65493 -15.04761 -14.80572 -14.21396 -13.94492 -13.87467 -13.63429 -13.37699 -13.19796 -12.98729 -12.75520 -12.40119 -12.20368 -11.92409 -11.58691 -11.23199 -11.20476 -11.08745 -11.03721 -10.91191 -10.86533 -10.63519 -10.30931 -10.11962 -10.03199 -9.77413 -9.71063 -9.39448 -9.17079 -8.66468 -8.40352 -6.61654 -5.75805 -3.20022 1.99037 2.84893 3.37499 3.44278 3.45374 3.46907 4.50252 4.57628 4.69086 4.89832 5.03801 5.11450 5.28205 5.32357 5.35966 5.40307 5.43577 5.53710 5.61201 5.66884 5.69172 5.79845 5.81061 6.01744 6.03151 6.17036 6.28363 6.32807 6.41760 6.43663 6.46422 6.53630 6.66584 6.67088 6.81419 6.93135 7.05034 7.11122 7.40064 7.69440 7.77230 7.83902 8.46451 8.49125 9.23989 9.87699 10.45334 11.32964 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031776 B = 0.003297 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.954979 B = 8491.226995 C = 8940.537374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.071 4.071 5 C -0.134 4.134 6 C 0.507 3.493 7 O -0.542 6.542 8 N -0.726 5.726 9 C 0.150 3.850 10 H 0.080 0.920 11 C -0.146 4.146 12 C 0.176 3.824 13 N -0.587 5.587 14 C -0.252 4.252 15 H 0.069 0.931 16 C 0.003 3.997 17 N -0.902 5.902 18 Si 0.900 3.100 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.171 3.829 23 H 0.026 0.974 24 C -0.135 4.135 25 C -0.133 4.133 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.394 0.606 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.088 0.912 39 H 0.020 0.980 40 H 0.253 0.747 41 H 0.038 0.962 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.063 0.937 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.532 19.607 0.839 20.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.125 4.125 3 C -0.177 4.177 4 C -0.109 4.109 5 C -0.174 4.174 6 C 0.293 3.707 7 O -0.419 6.419 8 N -0.376 5.376 9 C 0.046 3.954 10 H 0.098 0.902 11 C -0.187 4.187 12 C 0.049 3.951 13 N -0.311 5.311 14 C -0.381 4.381 15 H 0.087 0.913 16 C -0.196 4.196 17 N -0.546 5.546 18 Si 0.730 3.270 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.064 3.936 23 H 0.044 0.956 24 C -0.193 4.193 25 C -0.173 4.173 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.227 0.773 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.038 0.962 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.395 19.012 1.669 19.585 hybrid contribution -0.422 -0.516 -1.020 1.218 sum -4.817 18.496 0.649 19.124 Atomic orbital electron populations 1.23747 0.95214 1.01837 1.02642 1.21812 0.95472 0.95768 0.99474 1.20888 1.00240 0.94288 1.02269 1.20396 1.00911 0.94082 0.95494 1.21633 1.01142 0.95471 0.99159 1.20645 0.79417 0.86656 0.83981 1.90713 1.56719 1.63012 1.31445 1.46358 1.57865 1.24871 1.08540 1.21028 0.93203 0.81868 0.99262 0.90180 1.22561 0.98283 0.97374 1.00434 1.20730 0.91867 0.92969 0.89514 1.44156 1.35316 1.20329 1.31286 1.19141 1.41795 0.86374 0.90834 0.91317 1.25113 1.01895 0.96985 0.95601 1.70024 1.50973 1.20660 1.12933 0.86345 0.77944 0.81781 0.80963 1.21430 1.21636 1.20538 1.20355 0.90455 0.87066 0.95770 0.95620 1.21792 0.99193 1.00617 0.97674 1.22373 0.98555 0.99617 0.96794 0.88607 0.88418 0.91569 0.92143 0.91521 0.90463 0.90482 0.89083 0.89174 0.77259 0.92960 0.92750 0.89426 0.96182 0.93655 0.94335 0.91884 0.92776 0.91860 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.65 13.90 29.02 0.40 -1.25 16 2 C -0.13 -1.10 5.31 -101.06 -0.54 -1.64 16 3 C -0.12 -0.86 10.12 36.01 0.36 -0.49 16 4 C -0.07 -0.75 4.67 -27.88 -0.13 -0.88 16 5 C -0.13 -1.34 5.68 -27.88 -0.16 -1.50 16 6 C 0.51 7.32 7.79 -10.99 -0.09 7.24 16 7 O -0.54 -10.22 15.64 5.55 0.09 -10.14 16 8 N -0.73 -10.08 5.08 -53.77 -0.27 -10.36 16 9 C 0.15 2.63 2.42 -67.89 -0.16 2.46 16 10 H 0.08 1.60 7.58 -51.93 -0.39 1.20 16 11 C -0.15 -2.94 5.65 -26.61 -0.15 -3.09 16 12 C 0.18 4.28 5.28 -3.71 -0.02 4.26 16 13 N -0.59 -14.45 2.99 -164.77 -0.49 -14.95 16 14 C -0.25 -6.72 8.58 -15.06 -0.13 -6.85 16 15 H 0.07 1.78 6.23 -52.49 -0.33 1.45 16 16 C 0.00 0.08 4.94 -17.43 -0.09 -0.01 16 17 N -0.90 -26.30 11.23 55.49 0.62 -25.68 16 18 Si 0.90 21.58 29.58 -169.99 -5.03 16.55 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 22 C 0.17 3.49 3.50 -67.60 -0.24 3.26 16 23 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 24 C -0.14 -2.49 7.95 37.15 0.30 -2.19 16 25 C -0.13 -2.23 4.84 -26.61 -0.13 -2.36 16 26 H 0.10 0.68 7.83 -52.49 -0.41 0.27 16 27 H 0.10 0.82 7.99 -52.49 -0.42 0.40 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.37 7.78 -51.93 -0.40 -0.03 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.92 7.94 -51.93 -0.41 0.51 16 32 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.39 4.25 8.60 -40.82 -0.35 3.89 16 36 H 0.05 1.07 8.14 -51.92 -0.42 0.64 16 37 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.09 2.38 6.15 -51.93 -0.32 2.06 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 1.26 7.67 -51.93 -0.40 0.86 16 43 H 0.05 1.00 7.40 -51.93 -0.38 0.61 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 357.62 15.07 5.39 5.39 Total: -1.00 -31.11 357.62 -8.48 -39.60 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -8.03 Total: 2.63 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -0.76 Total: -3.05 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: -0.14 Total: -50.98 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.11 -8.48 -39.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502934884.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.043 kcal (2) G-P(sol) polarization free energy of solvation -31.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds