Wall clock time and date at job start Tue Mar 31 2020 01:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00116 * 2 1 4 4 C 1.50702 * 120.00044 * 179.97438 * 2 1 3 5 5 C 1.53005 * 109.47050 * 95.00342 * 4 2 1 6 6 C 1.50692 * 109.47439 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99834 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00201 * 179.97438 * 6 5 4 9 9 C 1.46502 * 119.99840 * 180.02562 * 8 6 5 10 10 H 1.09004 * 109.45848 * 324.96867 * 9 8 6 11 11 C 1.53034 * 109.46131 * 84.93493 * 9 8 6 12 12 C 1.53196 * 109.31415 * 181.38527 * 11 9 8 13 13 N 1.46927 * 108.77176 * 305.36121 * 12 11 9 14 14 C 1.36930 * 120.62911 * 233.62745 * 13 12 11 15 15 H 1.07998 * 119.99810 * 150.14780 * 14 13 12 16 16 C 1.38809 * 120.00194 * 330.14578 * 14 13 12 17 17 N 1.31614 * 120.00010 * 344.49920 * 16 14 13 18 18 Si 1.86800 * 119.99979 * 164.50361 * 16 14 13 19 19 H 1.48499 * 109.47538 * 89.99879 * 18 16 14 20 20 H 1.48509 * 109.46963 * 209.99990 * 18 16 14 21 21 H 1.48496 * 109.47074 * 329.99645 * 18 16 14 22 22 C 1.46924 * 118.73847 * 53.60952 * 13 12 11 23 23 H 1.09009 * 109.70827 * 66.24612 * 22 13 12 24 24 C 1.52994 * 109.58753 * 186.60240 * 22 13 12 25 25 C 1.53044 * 109.45563 * 205.00172 * 9 8 6 26 26 H 1.08000 * 120.00156 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.99875 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47124 * 239.99810 * 3 2 1 29 29 H 1.09001 * 109.46888 * 359.97438 * 3 2 1 30 30 H 1.08998 * 109.46982 * 119.99605 * 3 2 1 31 31 H 1.08992 * 109.47238 * 335.00600 * 4 2 1 32 32 H 1.08999 * 109.47150 * 215.00088 * 4 2 1 33 33 H 1.09005 * 109.47182 * 300.00536 * 5 4 2 34 34 H 1.09002 * 109.47067 * 59.99507 * 5 4 2 35 35 H 0.96996 * 119.99827 * 359.97438 * 8 6 5 36 36 H 1.09007 * 109.49731 * 301.32909 * 11 9 8 37 37 H 1.08998 * 109.50160 * 61.43076 * 11 9 8 38 38 H 1.08996 * 109.59001 * 185.57455 * 12 11 9 39 39 H 1.09005 * 109.58592 * 65.14401 * 12 11 9 40 40 H 0.97006 * 120.00227 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.47288 * 179.28864 * 24 22 13 42 42 H 1.09003 * 109.47445 * 299.29054 * 24 22 13 43 43 H 1.08996 * 109.47350 * 59.28631 * 24 22 13 44 44 H 1.08995 * 109.49433 * 298.56225 * 25 9 8 45 45 H 1.08992 * 109.50119 * 58.66374 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4275 -1.6845 -1.4363 6 6 3.1815 -2.9892 -1.4358 7 8 3.4062 -3.5593 -0.3891 8 7 3.6062 -3.5226 -2.5983 9 6 4.3388 -4.7913 -2.5978 10 1 4.9661 -4.8480 -1.7081 11 6 3.3442 -5.9544 -2.5952 12 6 4.1133 -7.2788 -2.5596 13 7 5.0663 -7.3023 -3.6777 14 6 5.0757 -8.3455 -4.5646 15 1 5.3794 -8.1816 -5.5879 16 6 4.6949 -9.6138 -4.1483 17 7 4.6201 -9.8899 -2.8636 18 14 4.2885 -10.9286 -5.4114 19 1 5.5209 -11.6825 -5.7553 20 1 3.2789 -11.8609 -4.8483 21 1 3.7426 -10.2879 -6.6347 22 6 6.0086 -6.1849 -3.8264 23 1 6.7057 -6.1779 -2.9884 24 6 6.7834 -6.3382 -5.1367 25 6 5.2182 -4.8727 -3.8477 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 2.6902 1.3628 -0.8899 29 1 1.3552 2.1336 -0.0005 30 1 2.6901 1.3628 0.8900 31 1 1.4386 -2.0852 0.4351 32 1 2.9742 -1.1986 0.5900 33 1 1.5168 -1.7909 -2.0258 34 1 3.0523 -0.9043 -1.8709 35 1 3.4262 -3.0668 -3.4354 36 1 2.7028 -5.8826 -1.7167 37 1 2.7331 -5.9126 -3.4968 38 1 3.4148 -8.1098 -2.6573 39 1 4.6541 -7.3621 -1.6169 40 1 4.3544 -10.7764 -2.5727 41 1 7.4728 -5.5017 -5.2512 42 1 7.3451 -7.2722 -5.1196 43 1 6.0844 -6.3499 -5.9729 44 1 4.5895 -4.8412 -4.7375 45 1 5.9106 -4.0311 -3.8608 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502934884.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:08 Heat of formation + Delta-G solvation = -39.639755 kcal Electronic energy + Delta-G solvation = -22294.464302 eV Core-core repulsion = 19118.222756 eV Total energy + Delta-G solvation = -3176.241545 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.03437 -39.33319 -37.31929 -36.04765 -34.22399 -33.13598 -32.17810 -30.98754 -28.10750 -27.96465 -26.81977 -25.43431 -23.67630 -22.37360 -21.36883 -20.76701 -19.30138 -18.38560 -17.78698 -17.24646 -16.76104 -16.65617 -15.77358 -15.63077 -15.53529 -15.10305 -14.94365 -14.79386 -14.54368 -14.30150 -14.03738 -13.44325 -13.33849 -13.03055 -12.91185 -12.70762 -12.69873 -12.60309 -12.48650 -12.34411 -12.10435 -11.95130 -11.84320 -11.81308 -11.72236 -11.49707 -11.31527 -10.77588 -10.55369 -9.97333 -9.90429 -8.64354 -7.84095 -5.31096 1.33265 1.47063 1.48639 1.57832 1.70464 2.28562 2.52682 3.32379 3.58237 3.73186 3.88950 3.98893 4.07592 4.07780 4.27077 4.31523 4.37808 4.40289 4.61372 4.66140 4.72939 4.75297 4.75703 4.85294 4.91114 4.96049 4.98016 5.07744 5.09588 5.12064 5.16778 5.18469 5.22228 5.38553 5.48929 5.55193 5.60827 5.70248 5.72838 5.77476 6.02019 6.43104 6.65958 7.16806 7.36069 7.88634 8.42152 9.23509 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031776 B = 0.003297 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.954979 B = 8491.226995 C = 8940.537374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.131 4.131 3 C -0.120 4.120 4 C -0.071 4.071 5 C -0.121 4.121 6 C 0.503 3.497 7 O -0.592 6.592 8 N -0.712 5.712 9 C 0.160 3.840 10 H 0.052 0.948 11 C -0.130 4.130 12 C 0.184 3.816 13 N -0.603 5.603 14 C -0.249 4.249 15 H 0.081 0.919 16 C -0.058 4.058 17 N -0.942 5.942 18 Si 0.965 3.035 19 H -0.286 1.286 20 H -0.299 1.299 21 H -0.266 1.266 22 C 0.158 3.842 23 H 0.009 0.991 24 C -0.126 4.126 25 C -0.117 4.117 26 H 0.112 0.888 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.112 0.888 34 H 0.122 0.878 35 H 0.416 0.584 36 H 0.042 0.958 37 H 0.062 0.938 38 H 0.053 0.947 39 H -0.015 1.015 40 H 0.247 0.753 41 H 0.077 0.923 42 H 0.038 0.962 43 H 0.056 0.944 44 H 0.076 0.924 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.840 22.695 -1.577 23.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.131 4.131 3 C -0.176 4.176 4 C -0.109 4.109 5 C -0.160 4.160 6 C 0.291 3.709 7 O -0.473 6.473 8 N -0.363 5.363 9 C 0.055 3.945 10 H 0.070 0.930 11 C -0.170 4.170 12 C 0.057 3.943 13 N -0.327 5.327 14 C -0.380 4.380 15 H 0.098 0.902 16 C -0.252 4.252 17 N -0.589 5.589 18 Si 0.793 3.207 19 H -0.212 1.212 20 H -0.225 1.225 21 H -0.190 1.190 22 C 0.052 3.948 23 H 0.026 0.974 24 C -0.184 4.184 25 C -0.156 4.156 26 H 0.130 0.870 27 H 0.110 0.890 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.131 0.869 34 H 0.140 0.860 35 H 0.253 0.747 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.003 0.997 40 H 0.056 0.944 41 H 0.096 0.904 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.095 0.905 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.702 22.162 -0.801 22.670 hybrid contribution -0.293 -1.445 -0.203 1.488 sum -4.995 20.717 -1.005 21.335 Atomic orbital electron populations 1.23887 0.95189 1.02407 1.01879 1.21801 0.95601 0.95523 1.00191 1.20914 1.00475 0.93533 1.02700 1.20336 1.00175 0.94653 0.95698 1.21631 1.01790 0.93330 0.99261 1.21490 0.78656 0.87653 0.83058 1.90706 1.58588 1.64668 1.33338 1.46079 1.57148 1.23391 1.09699 1.20622 0.92474 0.82594 0.98803 0.93022 1.22299 0.98207 0.96267 1.00234 1.20425 0.91335 0.94240 0.88277 1.44420 1.36423 1.21171 1.30671 1.19545 1.39989 0.86793 0.91627 0.90180 1.25911 1.02847 0.99321 0.97166 1.70206 1.52991 1.20690 1.14968 0.85315 0.77314 0.79052 0.79020 1.21238 1.22541 1.19024 1.20654 0.90297 0.87456 0.96425 0.97379 1.21708 0.99363 1.01121 0.96182 1.22170 0.98658 0.98355 0.96418 0.87005 0.88963 0.90553 0.90988 0.91681 0.92658 0.91824 0.86945 0.86010 0.74735 0.93975 0.91923 0.92865 0.99732 0.94439 0.90372 0.94252 0.92531 0.90498 0.89194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.88 13.90 67.78 0.94 -1.94 16 2 C -0.13 -2.04 5.31 -16.48 -0.09 -2.13 16 3 C -0.12 -1.38 10.12 71.24 0.72 -0.66 16 4 C -0.07 -1.42 4.67 29.85 0.14 -1.28 16 5 C -0.12 -2.08 5.68 29.85 0.17 -1.91 16 6 C 0.50 13.79 7.79 87.65 0.68 14.48 16 7 O -0.59 -22.70 15.64 -3.04 -0.05 -22.75 16 8 N -0.71 -17.98 5.08 -442.40 -2.25 -20.22 16 9 C 0.16 5.46 2.42 45.02 0.11 5.56 16 10 H 0.05 2.09 7.58 -2.38 -0.02 2.07 16 11 C -0.13 -5.28 5.65 30.67 0.17 -5.11 16 12 C 0.18 9.41 5.28 86.36 0.46 9.86 16 13 N -0.60 -30.08 2.99 -675.23 -2.02 -32.09 16 14 C -0.25 -13.38 8.58 84.03 0.72 -12.66 16 15 H 0.08 4.06 6.23 -2.91 -0.02 4.04 16 16 C -0.06 -3.26 4.94 84.86 0.42 -2.84 16 17 N -0.94 -57.44 11.23 21.65 0.24 -57.20 16 18 Si 0.96 45.05 29.58 68.60 2.03 47.08 16 19 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 20 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 C 0.16 6.30 3.50 44.97 0.16 6.45 16 23 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 24 C -0.13 -4.34 7.95 71.98 0.57 -3.77 16 25 C -0.12 -3.56 4.84 30.67 0.15 -3.42 16 26 H 0.11 1.27 7.83 -2.91 -0.02 1.25 16 27 H 0.09 1.43 7.99 -2.91 -0.02 1.41 16 28 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.67 7.78 -2.39 -0.02 0.65 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 1.33 7.94 -2.39 -0.02 1.31 16 32 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 33 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.42 7.17 8.60 -92.71 -0.80 6.37 16 36 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.05 3.06 6.15 -2.39 -0.01 3.05 16 39 H -0.02 -0.88 8.14 -2.38 -0.02 -0.90 16 40 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 41 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.04 1.52 7.67 -2.39 -0.02 1.50 16 43 H 0.06 1.91 7.40 -2.39 -0.02 1.89 16 44 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -71.62 357.62 3.44 -68.19 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.15 Total: 16.34 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 5.32 Total: 0.65 kcal Atomic # 7 Polarization: -105.49 SS G_CDS: -4.02 Total: -109.51 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.05 Total: -22.75 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -71.62 3.44 -68.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502934884.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.545 kcal (2) G-P(sol) polarization free energy of solvation -71.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds