Wall clock time and date at job start Tue Mar 31 2020 02:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50703 * 119.99760 * 2 1 4 4 C 1.50703 * 120.00271 * 180.02562 * 2 1 3 5 5 C 1.52998 * 109.47034 * 94.99819 * 4 2 1 6 6 C 1.50703 * 109.47034 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99552 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99821 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99567 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.50062 * 35.06406 * 9 8 6 11 11 C 1.53040 * 109.49572 * 274.99811 * 9 8 6 12 12 C 1.53049 * 109.53602 * 301.41328 * 11 9 8 13 13 C 1.53190 * 109.31475 * 298.63712 * 12 11 9 14 14 N 1.46923 * 108.77654 * 54.63199 * 13 12 11 15 15 C 1.36938 * 120.63138 * 126.36957 * 14 13 12 16 16 H 1.07994 * 120.00084 * 209.78983 * 15 14 13 17 17 C 1.38812 * 119.99741 * 29.50789 * 15 14 13 18 18 N 1.31616 * 119.99757 * 15.92617 * 17 15 14 19 19 Si 1.86798 * 120.00247 * 195.91900 * 17 15 14 20 20 H 1.48500 * 109.46924 * 60.00189 * 19 17 15 21 21 H 1.48495 * 109.47327 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47330 * 300.00806 * 19 17 15 23 23 C 1.46924 * 118.74213 * 306.64768 * 14 13 12 24 24 H 1.09001 * 109.58486 * 293.56946 * 23 14 13 25 25 C 1.52997 * 109.58884 * 173.14172 * 23 14 13 26 26 H 1.08005 * 120.00120 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.00590 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.47298 * 270.00145 * 3 2 1 29 29 H 1.08993 * 109.47332 * 29.99852 * 3 2 1 30 30 H 1.09006 * 109.47195 * 150.00376 * 3 2 1 31 31 H 1.08997 * 109.46994 * 334.99536 * 4 2 1 32 32 H 1.08999 * 109.46849 * 214.99762 * 4 2 1 33 33 H 1.08997 * 109.47461 * 60.00002 * 5 4 2 34 34 H 1.08999 * 109.47256 * 299.99694 * 5 4 2 35 35 H 0.96998 * 120.00358 * 359.97438 * 8 6 5 36 36 H 1.09001 * 109.45909 * 181.39769 * 11 9 8 37 37 H 1.08994 * 109.45361 * 61.42602 * 11 9 8 38 38 H 1.09003 * 109.49238 * 178.68445 * 12 11 9 39 39 H 1.09000 * 109.49658 * 58.58832 * 12 11 9 40 40 H 1.09005 * 109.58735 * 294.85155 * 13 12 11 41 41 H 1.08996 * 109.58743 * 174.42655 * 13 12 11 42 42 H 0.97000 * 119.99947 * 179.97438 * 18 17 15 43 43 H 1.08999 * 109.47164 * 59.99865 * 25 23 14 44 44 H 1.09003 * 109.47329 * 179.97438 * 25 23 14 45 45 H 1.08999 * 109.47438 * 299.99734 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4273 -1.6832 -1.4378 6 6 3.1815 -2.9880 -1.4383 7 8 3.4054 -3.5594 -0.3921 8 7 3.6070 -3.5199 -2.6012 9 6 4.3396 -4.7886 -2.6017 10 1 3.9486 -5.4349 -1.8160 11 6 5.8253 -4.5206 -2.3504 12 6 6.3673 -3.5861 -3.4345 13 6 6.2221 -4.2594 -4.8028 14 7 4.8186 -4.6513 -4.9905 15 6 4.1266 -4.2555 -6.1039 16 1 3.0584 -4.1055 -6.0508 17 6 4.7989 -4.0416 -7.2993 18 7 6.0191 -4.5078 -7.4606 19 14 3.9719 -3.0921 -8.6792 20 1 3.6357 -1.7249 -8.2070 21 1 4.8934 -3.0027 -9.8401 22 1 2.7287 -3.7944 -9.0874 23 6 4.1698 -5.4708 -3.9580 24 1 4.6342 -6.4565 -3.9286 25 6 2.6799 -5.6117 -4.2761 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5401 0.9352 0.0004 28 1 2.2450 1.6199 -1.0277 29 1 1.4743 2.0648 0.5138 30 1 3.0159 1.1749 0.5138 31 1 1.4386 -2.0856 0.4334 32 1 2.9742 -1.1990 0.5889 33 1 3.0522 -0.9027 -1.8718 34 1 1.5166 -1.7893 -2.0272 35 1 3.4276 -3.0631 -3.4379 36 1 6.3735 -5.4624 -2.3756 37 1 5.9498 -4.0539 -1.3733 38 1 7.4196 -3.3770 -3.2417 39 1 5.8031 -2.6535 -3.4263 40 1 6.8572 -5.1444 -4.8439 41 1 6.5144 -3.5607 -5.5867 42 1 6.4888 -4.3586 -8.2961 43 1 2.5596 -6.0910 -5.2476 44 1 2.2006 -6.2203 -3.5093 45 1 2.2182 -4.6246 -4.2982 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507372815.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:13 Heat of formation + Delta-G solvation = -18.665770 kcal Electronic energy + Delta-G solvation = -23072.771959 eV Core-core repulsion = 19897.439914 eV Total energy + Delta-G solvation = -3175.332045 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.76875 -37.80552 -36.34056 -33.90257 -32.45330 -31.80949 -31.06462 -29.28617 -27.40080 -26.34160 -25.07261 -24.43336 -21.95303 -20.80838 -20.06827 -18.73742 -18.44744 -16.76500 -16.43804 -15.61394 -15.34491 -14.93744 -14.68767 -14.31002 -13.95933 -13.81164 -13.52934 -13.29554 -13.14371 -12.92097 -12.61873 -12.36888 -12.07034 -11.85747 -11.79820 -11.27610 -11.24362 -11.09940 -10.98397 -10.89348 -10.72776 -10.62030 -10.53764 -10.13358 -10.03217 -9.67319 -9.50517 -9.32000 -9.08814 -8.54737 -8.42685 -6.69592 -5.83797 -3.28871 2.09425 3.02885 3.33053 3.39428 3.40267 3.70152 4.42830 4.72896 4.80778 5.07920 5.20626 5.27850 5.29998 5.34063 5.42674 5.51066 5.57967 5.60967 5.71489 5.75271 5.80062 5.80500 5.94101 5.96519 6.11441 6.14956 6.21985 6.33570 6.41696 6.52053 6.52688 6.67000 6.68118 6.76833 6.77795 6.93280 6.96808 7.13448 7.35947 7.63474 7.75141 8.06737 8.39674 8.67938 9.15628 9.78853 10.36362 11.24340 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016656 B = 0.004881 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.670901 B = 5735.253318 C = 6504.226942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.121 4.121 4 C -0.068 4.068 5 C -0.135 4.135 6 C 0.507 3.493 7 O -0.559 6.559 8 N -0.702 5.702 9 C 0.134 3.866 10 H 0.075 0.925 11 C -0.121 4.121 12 C -0.140 4.140 13 C 0.172 3.828 14 N -0.586 5.586 15 C -0.257 4.257 16 H 0.069 0.931 17 C 0.007 3.993 18 N -0.899 5.899 19 Si 0.900 3.100 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.283 1.283 23 C 0.159 3.841 24 H 0.038 0.962 25 C -0.135 4.135 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.408 0.592 36 H 0.061 0.939 37 H 0.049 0.951 38 H 0.046 0.954 39 H 0.053 0.947 40 H 0.018 0.982 41 H 0.085 0.915 42 H 0.254 0.746 43 H 0.063 0.937 44 H 0.038 0.962 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.314 6.825 11.005 14.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.122 4.122 3 C -0.178 4.178 4 C -0.106 4.106 5 C -0.175 4.175 6 C 0.293 3.707 7 O -0.438 6.438 8 N -0.353 5.353 9 C 0.027 3.973 10 H 0.093 0.907 11 C -0.159 4.159 12 C -0.179 4.179 13 C 0.046 3.954 14 N -0.309 5.309 15 C -0.387 4.387 16 H 0.087 0.913 17 C -0.192 4.192 18 N -0.543 5.543 19 Si 0.730 3.270 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.209 1.209 23 C 0.052 3.948 24 H 0.055 0.945 25 C -0.193 4.193 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.245 0.755 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.036 0.964 41 H 0.103 0.897 42 H 0.064 0.936 43 H 0.082 0.918 44 H 0.057 0.943 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.035 6.402 11.551 14.520 hybrid contribution -0.355 0.687 -1.282 1.497 sum -6.391 7.089 10.269 14.019 Atomic orbital electron populations 1.23683 0.95253 1.01747 1.03034 1.21826 0.95454 0.95841 0.99121 1.20892 1.00199 0.94481 1.02235 1.20411 1.00621 0.93933 0.95629 1.21617 1.01307 0.95789 0.98812 1.20609 0.79359 0.86717 0.83980 1.90646 1.58491 1.63039 1.31637 1.46056 1.55865 1.24348 1.08991 1.21440 0.91269 0.85025 0.99531 0.90731 1.21765 0.95714 1.00050 0.98395 1.22140 0.98671 0.98913 0.98181 1.20787 0.84829 0.97218 0.92552 1.44130 1.09500 1.57531 1.19777 1.19091 0.92631 1.39940 0.87015 0.91303 1.25087 0.96984 1.00170 0.96981 1.70017 1.12722 1.46151 1.25407 0.86425 0.78621 0.80219 0.81777 1.21054 1.21711 1.20914 1.20633 0.93314 0.93182 0.87688 0.94454 1.21780 0.95527 1.01019 1.00938 0.88479 0.88668 0.91314 0.92036 0.91767 0.90698 0.90636 0.89067 0.89123 0.75548 0.92030 0.93179 0.93521 0.92871 0.96425 0.89672 0.93583 0.91793 0.94255 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.91 13.89 29.02 0.40 -1.50 16 2 C -0.12 -1.24 5.31 -101.06 -0.54 -1.78 16 3 C -0.12 -1.06 10.03 36.01 0.36 -0.70 16 4 C -0.07 -0.80 4.67 -27.88 -0.13 -0.93 16 5 C -0.14 -1.65 5.68 -27.88 -0.16 -1.81 16 6 C 0.51 8.04 7.79 -10.98 -0.09 7.96 16 7 O -0.56 -10.54 15.65 5.55 0.09 -10.45 16 8 N -0.70 -11.54 3.44 -53.90 -0.19 -11.73 16 9 C 0.13 2.38 2.32 -68.03 -0.16 2.22 16 10 H 0.07 1.35 7.58 -51.93 -0.39 0.96 16 11 C -0.12 -2.15 5.58 -26.69 -0.15 -2.30 16 12 C -0.14 -2.63 5.93 -26.61 -0.16 -2.79 16 13 C 0.17 3.89 5.29 -3.71 -0.02 3.87 16 14 N -0.59 -13.33 2.65 -165.03 -0.44 -13.77 16 15 C -0.26 -6.38 8.58 -15.06 -0.13 -6.51 16 16 H 0.07 1.65 6.23 -52.49 -0.33 1.32 16 17 C 0.01 0.19 4.93 -17.43 -0.09 0.10 16 18 N -0.90 -24.94 11.23 55.49 0.62 -24.32 16 19 Si 0.90 20.61 29.58 -169.99 -5.03 15.58 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 23 C 0.16 3.12 3.18 -67.82 -0.22 2.91 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 C -0.14 -2.43 7.72 37.16 0.29 -2.14 16 26 H 0.10 0.90 7.99 -52.48 -0.42 0.48 16 27 H 0.09 0.79 8.04 -52.49 -0.42 0.36 16 28 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 29 H 0.06 0.47 8.06 -51.93 -0.42 0.05 16 30 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 31 H 0.07 0.94 7.94 -51.93 -0.41 0.53 16 32 H 0.08 0.94 8.06 -51.93 -0.42 0.53 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.41 6.84 7.74 -40.82 -0.32 6.52 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.05 1.01 7.53 -51.93 -0.39 0.62 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.09 2.16 6.13 -51.93 -0.32 1.85 16 42 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.06 1.24 7.62 -51.93 -0.40 0.84 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.94 6.36 -51.93 -0.33 0.61 16 LS Contribution 353.72 15.07 5.33 5.33 Total: -1.00 -28.18 353.72 -8.31 -36.49 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -7.92 Total: 6.28 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -0.77 Total: -3.41 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: 0.00 Total: -49.82 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.18 -8.31 -36.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507372815.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.821 kcal (2) G-P(sol) polarization free energy of solvation -28.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds