Wall clock time and date at job start Tue Mar 31 2020 02:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50703 * 119.99760 * 2 1 4 4 C 1.50703 * 120.00271 * 180.02562 * 2 1 3 5 5 C 1.52998 * 109.47034 * 94.99819 * 4 2 1 6 6 C 1.50703 * 109.47034 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99552 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99821 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99567 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.50062 * 35.06406 * 9 8 6 11 11 C 1.53040 * 109.49572 * 274.99811 * 9 8 6 12 12 C 1.53049 * 109.53602 * 301.41328 * 11 9 8 13 13 C 1.53190 * 109.31475 * 298.63712 * 12 11 9 14 14 N 1.46923 * 108.77654 * 54.63199 * 13 12 11 15 15 C 1.36938 * 120.63138 * 126.36957 * 14 13 12 16 16 H 1.07994 * 120.00084 * 209.78983 * 15 14 13 17 17 C 1.38812 * 119.99741 * 29.50789 * 15 14 13 18 18 N 1.31616 * 119.99757 * 15.92617 * 17 15 14 19 19 Si 1.86798 * 120.00247 * 195.91900 * 17 15 14 20 20 H 1.48500 * 109.46924 * 60.00189 * 19 17 15 21 21 H 1.48495 * 109.47327 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47330 * 300.00806 * 19 17 15 23 23 C 1.46924 * 118.74213 * 306.64768 * 14 13 12 24 24 H 1.09001 * 109.58486 * 293.56946 * 23 14 13 25 25 C 1.52997 * 109.58884 * 173.14172 * 23 14 13 26 26 H 1.08005 * 120.00120 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.00590 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.47298 * 270.00145 * 3 2 1 29 29 H 1.08993 * 109.47332 * 29.99852 * 3 2 1 30 30 H 1.09006 * 109.47195 * 150.00376 * 3 2 1 31 31 H 1.08997 * 109.46994 * 334.99536 * 4 2 1 32 32 H 1.08999 * 109.46849 * 214.99762 * 4 2 1 33 33 H 1.08997 * 109.47461 * 60.00002 * 5 4 2 34 34 H 1.08999 * 109.47256 * 299.99694 * 5 4 2 35 35 H 0.96998 * 120.00358 * 359.97438 * 8 6 5 36 36 H 1.09001 * 109.45909 * 181.39769 * 11 9 8 37 37 H 1.08994 * 109.45361 * 61.42602 * 11 9 8 38 38 H 1.09003 * 109.49238 * 178.68445 * 12 11 9 39 39 H 1.09000 * 109.49658 * 58.58832 * 12 11 9 40 40 H 1.09005 * 109.58735 * 294.85155 * 13 12 11 41 41 H 1.08996 * 109.58743 * 174.42655 * 13 12 11 42 42 H 0.97000 * 119.99947 * 179.97438 * 18 17 15 43 43 H 1.08999 * 109.47164 * 59.99865 * 25 23 14 44 44 H 1.09003 * 109.47329 * 179.97438 * 25 23 14 45 45 H 1.08999 * 109.47438 * 299.99734 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4273 -1.6832 -1.4378 6 6 3.1815 -2.9880 -1.4383 7 8 3.4054 -3.5594 -0.3921 8 7 3.6070 -3.5199 -2.6012 9 6 4.3396 -4.7886 -2.6017 10 1 3.9486 -5.4349 -1.8160 11 6 5.8253 -4.5206 -2.3504 12 6 6.3673 -3.5861 -3.4345 13 6 6.2221 -4.2594 -4.8028 14 7 4.8186 -4.6513 -4.9905 15 6 4.1266 -4.2555 -6.1039 16 1 3.0584 -4.1055 -6.0508 17 6 4.7989 -4.0416 -7.2993 18 7 6.0191 -4.5078 -7.4606 19 14 3.9719 -3.0921 -8.6792 20 1 3.6357 -1.7249 -8.2070 21 1 4.8934 -3.0027 -9.8401 22 1 2.7287 -3.7944 -9.0874 23 6 4.1698 -5.4708 -3.9580 24 1 4.6342 -6.4565 -3.9286 25 6 2.6799 -5.6117 -4.2761 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5401 0.9352 0.0004 28 1 2.2450 1.6199 -1.0277 29 1 1.4743 2.0648 0.5138 30 1 3.0159 1.1749 0.5138 31 1 1.4386 -2.0856 0.4334 32 1 2.9742 -1.1990 0.5889 33 1 3.0522 -0.9027 -1.8718 34 1 1.5166 -1.7893 -2.0272 35 1 3.4276 -3.0631 -3.4379 36 1 6.3735 -5.4624 -2.3756 37 1 5.9498 -4.0539 -1.3733 38 1 7.4196 -3.3770 -3.2417 39 1 5.8031 -2.6535 -3.4263 40 1 6.8572 -5.1444 -4.8439 41 1 6.5144 -3.5607 -5.5867 42 1 6.4888 -4.3586 -8.2961 43 1 2.5596 -6.0910 -5.2476 44 1 2.2006 -6.2203 -3.5093 45 1 2.2182 -4.6246 -4.2982 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507372815.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:12 Heat of formation + Delta-G solvation = -33.079153 kcal Electronic energy + Delta-G solvation = -23073.396970 eV Core-core repulsion = 19897.439914 eV Total energy + Delta-G solvation = -3175.957056 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.14672 -39.27755 -37.24152 -35.55814 -34.02474 -33.40584 -32.23985 -30.85173 -28.10262 -27.88764 -26.84817 -25.54780 -23.60959 -22.37787 -21.43946 -20.26003 -19.28209 -18.24016 -17.96786 -17.06710 -16.71297 -16.46537 -15.82457 -15.55395 -15.46565 -15.21607 -14.72259 -14.62352 -14.53760 -14.24054 -14.01927 -13.57240 -13.43716 -12.98254 -12.90458 -12.83534 -12.68063 -12.50715 -12.44028 -12.33847 -12.16923 -11.93991 -11.91834 -11.78313 -11.66340 -11.35312 -11.02598 -10.77155 -10.47202 -9.88466 -9.85219 -8.59594 -7.80253 -5.26651 1.34225 1.52118 1.53514 1.59148 1.77559 2.43716 2.55825 3.36178 3.60295 3.77754 4.00054 4.03212 4.08819 4.12935 4.22160 4.33523 4.39902 4.41214 4.58377 4.67370 4.70038 4.72724 4.81376 4.89051 4.95571 4.99818 5.01671 5.05711 5.11718 5.14647 5.17050 5.22569 5.24695 5.35556 5.47186 5.56428 5.69088 5.76047 5.78288 5.81473 6.02281 6.45717 6.75494 7.20962 7.39252 7.91124 8.44847 9.26537 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016656 B = 0.004881 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.670901 B = 5735.253318 C = 6504.226942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 C -0.121 4.121 4 C -0.063 4.063 5 C -0.127 4.127 6 C 0.508 3.492 7 O -0.589 6.589 8 N -0.700 5.700 9 C 0.143 3.857 10 H 0.076 0.924 11 C -0.115 4.115 12 C -0.125 4.125 13 C 0.179 3.821 14 N -0.595 5.595 15 C -0.249 4.249 16 H 0.080 0.920 17 C -0.048 4.048 18 N -0.936 5.936 19 Si 0.959 3.041 20 H -0.275 1.275 21 H -0.304 1.304 22 H -0.278 1.278 23 C 0.156 3.844 24 H 0.027 0.973 25 C -0.127 4.127 26 H 0.096 0.904 27 H 0.110 0.890 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.409 0.591 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.055 0.945 40 H -0.007 1.007 41 H 0.055 0.945 42 H 0.246 0.754 43 H 0.046 0.954 44 H 0.062 0.938 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.991 8.202 11.909 16.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.133 4.133 3 C -0.178 4.178 4 C -0.101 4.101 5 C -0.167 4.167 6 C 0.296 3.704 7 O -0.470 6.470 8 N -0.351 5.351 9 C 0.036 3.964 10 H 0.094 0.906 11 C -0.154 4.154 12 C -0.164 4.164 13 C 0.054 3.946 14 N -0.319 5.319 15 C -0.379 4.379 16 H 0.098 0.902 17 C -0.244 4.244 18 N -0.583 5.583 19 Si 0.788 3.212 20 H -0.201 1.201 21 H -0.231 1.231 22 H -0.204 1.204 23 C 0.050 3.950 24 H 0.044 0.956 25 C -0.184 4.184 26 H 0.115 0.885 27 H 0.128 0.872 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.245 0.755 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.011 0.989 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.081 0.919 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.743 7.789 12.477 16.622 hybrid contribution 0.140 0.194 -1.495 1.514 sum -7.603 7.983 10.982 15.561 Atomic orbital electron populations 1.23847 0.95117 1.02494 1.01797 1.21820 0.95701 0.95570 1.00226 1.20908 1.00163 0.93995 1.02696 1.20329 1.00136 0.94639 0.95029 1.21624 1.01613 0.93876 0.99553 1.21193 0.78739 0.87432 0.83028 1.90637 1.59653 1.64139 1.32601 1.46027 1.55828 1.23847 1.09356 1.21198 0.91480 0.85705 0.98002 0.90562 1.21712 0.95761 0.99905 0.97984 1.21946 0.99787 0.98650 0.96028 1.20567 0.84588 0.95690 0.93780 1.44309 1.09433 1.58203 1.20002 1.19447 0.93154 1.37985 0.87264 0.90204 1.25770 0.97618 1.01705 0.99264 1.70179 1.14277 1.48260 1.25536 0.85469 0.77417 0.79380 0.78906 1.20115 1.23055 1.20395 1.20750 0.94088 0.92412 0.87778 0.95566 1.21695 0.94366 1.01618 1.00751 0.88523 0.87199 0.90847 0.90906 0.91926 0.91838 0.91755 0.87636 0.87524 0.75492 0.91819 0.92690 0.92106 0.92658 0.98938 0.92674 0.94490 0.93507 0.91918 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.23 13.89 67.79 0.94 -2.29 16 2 C -0.13 -2.40 5.31 -16.48 -0.09 -2.49 16 3 C -0.12 -1.82 10.03 71.24 0.71 -1.10 16 4 C -0.06 -1.38 4.67 29.85 0.14 -1.25 16 5 C -0.13 -2.80 5.68 29.85 0.17 -2.63 16 6 C 0.51 15.11 7.79 87.66 0.68 15.79 16 7 O -0.59 -21.36 15.65 -3.04 -0.05 -21.41 16 8 N -0.70 -21.65 3.44 -442.84 -1.53 -23.17 16 9 C 0.14 4.87 2.32 44.93 0.10 4.97 16 10 H 0.08 2.63 7.58 -2.39 -0.02 2.61 16 11 C -0.11 -3.94 5.58 30.62 0.17 -3.77 16 12 C -0.13 -4.59 5.93 30.67 0.18 -4.41 16 13 C 0.18 8.22 5.29 86.36 0.46 8.68 16 14 N -0.60 -26.98 2.65 -676.04 -1.79 -28.78 16 15 C -0.25 -12.19 8.58 84.03 0.72 -11.47 16 16 H 0.08 3.70 6.23 -2.91 -0.02 3.68 16 17 C -0.05 -2.52 4.93 84.86 0.42 -2.10 16 18 N -0.94 -53.19 11.23 21.65 0.24 -52.94 16 19 Si 0.96 42.38 29.58 68.60 2.03 44.41 16 20 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 22 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 23 C 0.16 5.99 3.18 44.83 0.14 6.13 16 24 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 25 C -0.13 -4.34 7.72 71.98 0.56 -3.78 16 26 H 0.10 1.58 7.99 -2.91 -0.02 1.56 16 27 H 0.11 1.48 8.04 -2.91 -0.02 1.46 16 28 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.07 0.92 8.06 -2.39 -0.02 0.90 16 30 H 0.06 0.95 8.09 -2.38 -0.02 0.93 16 31 H 0.06 1.51 7.94 -2.39 -0.02 1.49 16 32 H 0.06 1.53 8.06 -2.39 -0.02 1.52 16 33 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.41 12.78 7.74 -92.71 -0.72 12.06 16 36 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.05 2.01 7.53 -2.39 -0.02 1.99 16 40 H -0.01 -0.38 8.14 -2.38 -0.02 -0.39 16 41 H 0.05 2.87 6.13 -2.39 -0.01 2.85 16 42 H 0.25 13.80 8.31 -92.71 -0.77 13.02 16 43 H 0.05 1.75 7.62 -2.39 -0.02 1.73 16 44 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.06 1.95 6.36 -2.39 -0.02 1.94 16 Total: -1.00 -60.10 353.72 4.45 -55.65 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: 0.23 Total: 25.94 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 5.31 Total: 0.30 kcal Atomic # 7 Polarization: -101.82 SS G_CDS: -3.08 Total: -104.89 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.05 Total: -21.41 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -60.10 4.45 -55.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507372815.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.569 kcal (2) G-P(sol) polarization free energy of solvation -60.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds