Wall clock time and date at job start Tue Mar 31 2020 02:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50704 * 119.99960 * 2 1 4 4 C 1.50701 * 119.99981 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.47512 * 95.00004 * 4 2 1 6 6 C 1.50697 * 109.47106 * 179.97438 * 5 4 2 7 7 O 1.21277 * 120.00282 * 0.27905 * 6 5 4 8 8 N 1.34775 * 119.99785 * 179.97438 * 6 5 4 9 9 C 1.46502 * 120.00046 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.50211 * 325.07463 * 9 8 6 11 11 C 1.53048 * 109.49611 * 85.16665 * 9 8 6 12 12 C 1.53038 * 109.54002 * 181.31813 * 11 9 8 13 13 C 1.53190 * 109.31281 * 298.63567 * 12 11 9 14 14 N 1.46931 * 108.77588 * 54.63166 * 13 12 11 15 15 C 1.36937 * 120.62609 * 126.41771 * 14 13 12 16 16 H 1.08009 * 119.99734 * 208.99703 * 15 14 13 17 17 C 1.38809 * 120.00534 * 28.99824 * 15 14 13 18 18 N 1.31621 * 119.99824 * 15.02455 * 17 15 14 19 19 Si 1.86797 * 120.00208 * 195.03291 * 17 15 14 20 20 H 1.48508 * 109.47384 * 89.99541 * 19 17 15 21 21 H 1.48497 * 109.47297 * 209.99897 * 19 17 15 22 22 H 1.48508 * 109.47070 * 330.00040 * 19 17 15 23 23 C 1.46919 * 118.74081 * 306.39478 * 14 13 12 24 24 H 1.09005 * 109.58391 * 293.82055 * 23 14 13 25 25 C 1.52996 * 109.58825 * 173.39657 * 23 14 13 26 26 H 1.07995 * 120.00441 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.99777 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46990 * 270.00104 * 3 2 1 29 29 H 1.08994 * 109.47130 * 29.99735 * 3 2 1 30 30 H 1.08999 * 109.47095 * 150.00069 * 3 2 1 31 31 H 1.08996 * 109.47505 * 334.99482 * 4 2 1 32 32 H 1.09005 * 109.46969 * 215.00030 * 4 2 1 33 33 H 1.09002 * 109.46947 * 59.99615 * 5 4 2 34 34 H 1.08996 * 109.47107 * 300.00189 * 5 4 2 35 35 H 0.96998 * 120.00437 * 0.02562 * 8 6 5 36 36 H 1.09006 * 109.45688 * 301.33810 * 11 9 8 37 37 H 1.09002 * 109.45782 * 61.29055 * 11 9 8 38 38 H 1.08996 * 109.49602 * 178.68136 * 12 11 9 39 39 H 1.09000 * 109.49756 * 58.58472 * 12 11 9 40 40 H 1.08999 * 109.58615 * 294.85135 * 13 12 11 41 41 H 1.08997 * 109.58738 * 174.42377 * 13 12 11 42 42 H 0.96997 * 119.99669 * 179.97438 * 18 17 15 43 43 H 1.09005 * 109.47178 * 300.71054 * 25 23 14 44 44 H 1.09000 * 109.47562 * 60.70937 * 25 23 14 45 45 H 1.09007 * 109.47286 * 180.71172 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6834 -1.4377 6 6 3.1814 -2.9881 -1.4381 7 8 3.4013 -3.5618 -0.3925 8 7 3.6061 -3.5206 -2.6011 9 6 4.3396 -4.7887 -2.6016 10 1 4.9661 -4.8471 -1.7115 11 6 3.3465 -5.9533 -2.6051 12 6 4.1114 -7.2784 -2.5723 13 6 4.9891 -7.3877 -3.8231 14 7 5.8469 -6.1976 -3.9044 15 6 7.2050 -6.3236 -4.0265 16 1 7.8561 -5.5571 -3.6325 17 6 7.7451 -7.4363 -4.6567 18 7 6.9774 -8.2146 -5.3898 19 14 9.5611 -7.8291 -4.4643 20 1 9.7545 -8.7115 -3.2856 21 1 10.0504 -8.5191 -5.6848 22 1 10.3222 -6.5689 -4.2693 23 6 5.2199 -4.8700 -3.8527 24 1 4.6066 -4.7207 -4.7413 25 6 6.3044 -3.7927 -3.7875 26 1 -0.5400 0.9352 -0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 2.2451 1.6198 -1.0277 29 1 1.4744 2.0648 0.5138 30 1 3.0159 1.1748 0.5138 31 1 1.4386 -2.0856 0.4334 32 1 2.9742 -1.1991 0.5889 33 1 3.0523 -0.9028 -1.8717 34 1 1.5167 -1.7893 -2.0272 35 1 3.4268 -3.0638 -3.4379 36 1 2.7026 -5.8839 -1.7283 37 1 2.7369 -5.9079 -3.5075 38 1 3.4033 -8.1067 -2.5512 39 1 4.7400 -7.3137 -1.6826 40 1 4.3570 -7.4437 -4.7093 41 1 5.6095 -8.2815 -3.7571 42 1 7.3549 -8.9919 -5.8305 43 1 6.9193 -3.9492 -2.9012 44 1 6.9296 -3.8521 -4.6785 45 1 5.8371 -2.8092 -3.7365 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507372823.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:16 Heat of formation + Delta-G solvation = -19.690506 kcal Electronic energy + Delta-G solvation = -22540.939127 eV Core-core repulsion = 19365.562646 eV Total energy + Delta-G solvation = -3175.376481 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.79088 -37.79781 -36.47129 -34.26016 -32.59656 -31.79181 -31.20500 -29.10932 -27.50275 -26.31501 -25.10056 -24.44046 -21.92238 -20.68176 -20.07379 -19.27025 -18.59467 -16.81836 -16.36856 -15.71459 -15.67921 -14.94916 -14.76582 -14.25609 -13.94649 -13.74283 -13.66894 -13.50793 -13.22424 -12.92428 -12.59314 -12.43834 -12.19290 -11.92180 -11.69321 -11.53932 -11.20007 -11.11874 -11.01321 -10.90696 -10.77033 -10.55279 -10.28242 -10.11866 -10.02571 -9.87166 -9.58351 -9.38130 -9.17627 -8.63663 -8.44805 -6.67938 -5.79498 -3.24082 1.98689 2.87257 3.37670 3.42738 3.45113 3.48874 4.48148 4.60059 4.69901 4.91384 5.06101 5.14719 5.29898 5.31240 5.38662 5.39843 5.50496 5.55106 5.64019 5.69062 5.70830 5.80821 5.82485 5.97572 6.03505 6.10447 6.22110 6.34322 6.40802 6.42136 6.54227 6.65353 6.66499 6.74605 6.76340 6.87110 6.98975 7.08247 7.40981 7.67930 7.79921 7.81708 8.43058 8.50685 9.20021 9.82676 10.38838 11.29043 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.033102 B = 0.003495 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.674125 B = 8010.073513 C = 8452.978605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.121 4.121 4 C -0.071 4.071 5 C -0.134 4.134 6 C 0.508 3.492 7 O -0.545 6.545 8 N -0.720 5.720 9 C 0.130 3.870 10 H 0.085 0.915 11 C -0.116 4.116 12 C -0.140 4.140 13 C 0.169 3.831 14 N -0.583 5.583 15 C -0.252 4.252 16 H 0.071 0.929 17 C 0.003 3.997 18 N -0.903 5.903 19 Si 0.903 3.097 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.167 3.833 24 H 0.027 0.973 25 C -0.136 4.136 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.396 0.604 36 H 0.048 0.952 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.018 0.982 41 H 0.089 0.911 42 H 0.253 0.747 43 H 0.054 0.946 44 H 0.063 0.937 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.997 14.563 5.898 19.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.123 4.123 3 C -0.178 4.178 4 C -0.108 4.108 5 C -0.174 4.174 6 C 0.294 3.706 7 O -0.423 6.423 8 N -0.370 5.370 9 C 0.024 3.976 10 H 0.103 0.897 11 C -0.155 4.155 12 C -0.180 4.180 13 C 0.044 3.956 14 N -0.306 5.306 15 C -0.381 4.381 16 H 0.088 0.912 17 C -0.195 4.195 18 N -0.547 5.547 19 Si 0.733 3.267 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.204 1.204 23 C 0.060 3.940 24 H 0.045 0.955 25 C -0.194 4.194 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.229 0.771 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.037 0.963 41 H 0.108 0.892 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.744 13.991 6.534 18.812 hybrid contribution 0.700 -0.101 -0.443 0.834 sum -10.044 13.889 6.092 18.191 Atomic orbital electron populations 1.23700 0.95255 1.01795 1.02867 1.21822 0.95447 0.95806 0.99264 1.20890 1.00287 0.94476 1.02147 1.20431 1.00824 0.94045 0.95541 1.21631 1.01137 0.95594 0.99081 1.20621 0.79357 0.86650 0.83931 1.90694 1.57036 1.62974 1.31556 1.46179 1.57480 1.24792 1.08580 1.21769 0.92891 0.81125 1.01783 0.89723 1.21756 0.97702 0.95601 1.00436 1.22185 0.98818 0.95083 1.01939 1.20852 0.91660 0.91754 0.91362 1.44046 1.03311 0.98401 1.84842 1.19192 0.81735 1.06674 1.30499 0.91158 1.25075 0.97668 0.99861 0.96911 1.70021 1.34793 1.17416 1.32518 0.86286 0.85073 0.78257 0.77116 1.21419 1.21784 1.20419 1.20562 0.92810 0.88053 0.92608 0.95544 1.21814 0.98967 0.95918 1.02662 0.88622 0.88459 0.91397 0.91986 0.91698 0.90589 0.90470 0.89045 0.89112 0.77101 0.93275 0.92852 0.93052 0.92556 0.96344 0.89243 0.93646 0.92693 0.91810 0.94312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.64 13.89 29.02 0.40 -1.24 16 2 C -0.12 -1.09 5.31 -101.06 -0.54 -1.62 16 3 C -0.12 -0.89 10.03 36.01 0.36 -0.52 16 4 C -0.07 -0.74 4.67 -27.88 -0.13 -0.87 16 5 C -0.13 -1.35 5.68 -27.88 -0.16 -1.51 16 6 C 0.51 7.34 7.80 -10.99 -0.09 7.26 16 7 O -0.55 -10.16 15.65 5.56 0.09 -10.07 16 8 N -0.72 -10.27 4.57 -53.69 -0.25 -10.52 16 9 C 0.13 2.36 1.99 -67.81 -0.14 2.22 16 10 H 0.08 1.79 7.58 -51.93 -0.39 1.39 16 11 C -0.12 -2.12 5.46 -26.69 -0.15 -2.26 16 12 C -0.14 -2.81 6.08 -26.61 -0.16 -2.97 16 13 C 0.17 4.02 5.29 -3.71 -0.02 4.00 16 14 N -0.58 -14.21 2.99 -164.78 -0.49 -14.71 16 15 C -0.25 -6.69 8.61 -15.06 -0.13 -6.82 16 16 H 0.07 1.84 6.20 -52.48 -0.33 1.51 16 17 C 0.00 0.09 4.96 -17.43 -0.09 0.01 16 18 N -0.90 -25.80 11.14 55.49 0.62 -25.18 16 19 Si 0.90 21.55 29.58 -169.99 -5.03 16.52 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C 0.17 3.36 3.03 -67.61 -0.21 3.15 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 25 C -0.14 -2.51 7.84 37.16 0.29 -2.22 16 26 H 0.10 0.67 8.04 -52.49 -0.42 0.25 16 27 H 0.10 0.79 7.99 -52.48 -0.42 0.37 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.40 8.06 -51.93 -0.42 -0.02 16 30 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.08 0.88 7.94 -51.93 -0.41 0.47 16 32 H 0.08 0.88 8.06 -51.93 -0.42 0.47 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.40 4.54 8.60 -40.82 -0.35 4.19 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.09 2.38 6.06 -51.93 -0.31 2.07 16 42 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.05 1.07 7.40 -51.93 -0.38 0.69 16 44 H 0.06 1.25 7.66 -51.93 -0.40 0.86 16 45 H 0.04 0.58 7.79 -51.93 -0.40 0.18 16 LS Contribution 356.93 15.07 5.38 5.38 Total: -1.00 -30.50 356.93 -8.44 -38.94 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -8.02 Total: 3.04 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -0.74 Total: -3.40 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.12 Total: -50.41 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.50 -8.44 -38.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507372823.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.251 kcal (2) G-P(sol) polarization free energy of solvation -30.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds