Wall clock time and date at job start Tue Mar 31 2020 02:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50704 * 119.99960 * 2 1 4 4 C 1.50701 * 119.99981 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.47512 * 95.00004 * 4 2 1 6 6 C 1.50697 * 109.47106 * 179.97438 * 5 4 2 7 7 O 1.21277 * 120.00282 * 0.27905 * 6 5 4 8 8 N 1.34775 * 119.99785 * 179.97438 * 6 5 4 9 9 C 1.46502 * 120.00046 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.50211 * 325.07463 * 9 8 6 11 11 C 1.53048 * 109.49611 * 85.16665 * 9 8 6 12 12 C 1.53038 * 109.54002 * 181.31813 * 11 9 8 13 13 C 1.53190 * 109.31281 * 298.63567 * 12 11 9 14 14 N 1.46931 * 108.77588 * 54.63166 * 13 12 11 15 15 C 1.36937 * 120.62609 * 126.41771 * 14 13 12 16 16 H 1.08009 * 119.99734 * 208.99703 * 15 14 13 17 17 C 1.38809 * 120.00534 * 28.99824 * 15 14 13 18 18 N 1.31621 * 119.99824 * 15.02455 * 17 15 14 19 19 Si 1.86797 * 120.00208 * 195.03291 * 17 15 14 20 20 H 1.48508 * 109.47384 * 89.99541 * 19 17 15 21 21 H 1.48497 * 109.47297 * 209.99897 * 19 17 15 22 22 H 1.48508 * 109.47070 * 330.00040 * 19 17 15 23 23 C 1.46919 * 118.74081 * 306.39478 * 14 13 12 24 24 H 1.09005 * 109.58391 * 293.82055 * 23 14 13 25 25 C 1.52996 * 109.58825 * 173.39657 * 23 14 13 26 26 H 1.07995 * 120.00441 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.99777 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46990 * 270.00104 * 3 2 1 29 29 H 1.08994 * 109.47130 * 29.99735 * 3 2 1 30 30 H 1.08999 * 109.47095 * 150.00069 * 3 2 1 31 31 H 1.08996 * 109.47505 * 334.99482 * 4 2 1 32 32 H 1.09005 * 109.46969 * 215.00030 * 4 2 1 33 33 H 1.09002 * 109.46947 * 59.99615 * 5 4 2 34 34 H 1.08996 * 109.47107 * 300.00189 * 5 4 2 35 35 H 0.96998 * 120.00437 * 0.02562 * 8 6 5 36 36 H 1.09006 * 109.45688 * 301.33810 * 11 9 8 37 37 H 1.09002 * 109.45782 * 61.29055 * 11 9 8 38 38 H 1.08996 * 109.49602 * 178.68136 * 12 11 9 39 39 H 1.09000 * 109.49756 * 58.58472 * 12 11 9 40 40 H 1.08999 * 109.58615 * 294.85135 * 13 12 11 41 41 H 1.08997 * 109.58738 * 174.42377 * 13 12 11 42 42 H 0.96997 * 119.99669 * 179.97438 * 18 17 15 43 43 H 1.09005 * 109.47178 * 300.71054 * 25 23 14 44 44 H 1.09000 * 109.47562 * 60.70937 * 25 23 14 45 45 H 1.09007 * 109.47286 * 180.71172 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4274 -1.6834 -1.4377 6 6 3.1814 -2.9881 -1.4381 7 8 3.4013 -3.5618 -0.3925 8 7 3.6061 -3.5206 -2.6011 9 6 4.3396 -4.7887 -2.6016 10 1 4.9661 -4.8471 -1.7115 11 6 3.3465 -5.9533 -2.6051 12 6 4.1114 -7.2784 -2.5723 13 6 4.9891 -7.3877 -3.8231 14 7 5.8469 -6.1976 -3.9044 15 6 7.2050 -6.3236 -4.0265 16 1 7.8561 -5.5571 -3.6325 17 6 7.7451 -7.4363 -4.6567 18 7 6.9774 -8.2146 -5.3898 19 14 9.5611 -7.8291 -4.4643 20 1 9.7545 -8.7115 -3.2856 21 1 10.0504 -8.5191 -5.6848 22 1 10.3222 -6.5689 -4.2693 23 6 5.2199 -4.8700 -3.8527 24 1 4.6066 -4.7207 -4.7413 25 6 6.3044 -3.7927 -3.7875 26 1 -0.5400 0.9352 -0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 2.2451 1.6198 -1.0277 29 1 1.4744 2.0648 0.5138 30 1 3.0159 1.1748 0.5138 31 1 1.4386 -2.0856 0.4334 32 1 2.9742 -1.1991 0.5889 33 1 3.0523 -0.9028 -1.8717 34 1 1.5167 -1.7893 -2.0272 35 1 3.4268 -3.0638 -3.4379 36 1 2.7026 -5.8839 -1.7283 37 1 2.7369 -5.9079 -3.5075 38 1 3.4033 -8.1067 -2.5512 39 1 4.7400 -7.3137 -1.6826 40 1 4.3570 -7.4437 -4.7093 41 1 5.6095 -8.2815 -3.7571 42 1 7.3549 -8.9919 -5.8305 43 1 6.9193 -3.9492 -2.9012 44 1 6.9296 -3.8521 -4.6785 45 1 5.8371 -2.8092 -3.7365 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507372823.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:15 Heat of formation + Delta-G solvation = -37.563186 kcal Electronic energy + Delta-G solvation = -22541.714144 eV Core-core repulsion = 19365.562646 eV Total energy + Delta-G solvation = -3176.151499 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.07714 -39.32165 -37.27317 -35.84459 -34.26565 -33.43149 -32.27718 -30.71218 -28.10219 -27.88485 -26.90821 -25.55907 -23.52004 -22.32900 -21.35588 -20.90121 -19.29161 -18.31864 -17.83817 -17.28973 -16.72739 -16.59278 -15.68356 -15.61652 -15.56083 -15.10433 -14.93988 -14.78962 -14.47211 -14.28706 -14.04669 -13.48354 -13.32654 -13.25252 -12.93518 -12.82542 -12.70025 -12.53429 -12.49102 -12.36105 -12.00409 -11.93408 -11.81785 -11.78181 -11.77133 -11.61502 -11.18424 -10.78938 -10.53103 -9.95862 -9.87828 -8.65879 -7.85628 -5.31863 1.34302 1.46329 1.48813 1.56172 1.73453 2.26075 2.54960 3.29778 3.60585 3.76920 3.91925 4.00634 4.04958 4.09772 4.21328 4.33725 4.36701 4.40482 4.53589 4.62380 4.70850 4.73985 4.79346 4.88757 4.90982 4.93013 5.01626 5.03654 5.12655 5.13177 5.18693 5.22972 5.24160 5.30644 5.45722 5.51471 5.62821 5.70034 5.76816 5.78865 6.02732 6.41696 6.67487 7.16180 7.37157 7.86704 8.37893 9.21224 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.033102 B = 0.003495 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.674125 B = 8010.073513 C = 8452.978605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 C -0.121 4.121 4 C -0.069 4.069 5 C -0.122 4.122 6 C 0.507 3.493 7 O -0.591 6.591 8 N -0.709 5.709 9 C 0.146 3.854 10 H 0.053 0.947 11 C -0.109 4.109 12 C -0.130 4.130 13 C 0.176 3.824 14 N -0.602 5.602 15 C -0.253 4.253 16 H 0.072 0.928 17 C -0.049 4.049 18 N -0.934 5.934 19 Si 0.961 3.039 20 H -0.290 1.290 21 H -0.295 1.295 22 H -0.268 1.268 23 C 0.164 3.836 24 H 0.034 0.966 25 C -0.127 4.127 26 H 0.110 0.890 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.414 0.586 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.042 0.958 40 H 0.004 0.996 41 H 0.055 0.945 42 H 0.249 0.751 43 H 0.038 0.962 44 H 0.048 0.952 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.094 16.993 5.862 21.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.131 4.131 3 C -0.177 4.177 4 C -0.107 4.107 5 C -0.161 4.161 6 C 0.295 3.705 7 O -0.471 6.471 8 N -0.361 5.361 9 C 0.039 3.961 10 H 0.072 0.928 11 C -0.147 4.147 12 C -0.170 4.170 13 C 0.050 3.950 14 N -0.326 5.326 15 C -0.383 4.383 16 H 0.090 0.910 17 C -0.245 4.245 18 N -0.580 5.580 19 Si 0.790 3.210 20 H -0.217 1.217 21 H -0.221 1.221 22 H -0.193 1.193 23 C 0.057 3.943 24 H 0.052 0.948 25 C -0.185 4.185 26 H 0.129 0.871 27 H 0.113 0.887 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.250 0.750 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.060 0.940 40 H 0.022 0.978 41 H 0.074 0.926 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.861 16.474 6.489 21.312 hybrid contribution 0.981 -0.822 -0.395 1.339 sum -10.880 15.652 6.094 20.013 Atomic orbital electron populations 1.23846 0.95141 1.02460 1.01822 1.21798 0.95629 0.95485 1.00235 1.20909 1.00046 0.93838 1.02949 1.20365 1.00081 0.94689 0.95571 1.21636 1.01827 0.93333 0.99347 1.21408 0.78601 0.87567 0.82882 1.90685 1.58727 1.64487 1.33200 1.45975 1.56855 1.23503 1.09755 1.21251 0.92574 0.83102 0.99169 0.92833 1.21677 0.97477 0.94396 1.01180 1.22026 0.98567 0.97252 0.99164 1.20639 0.91257 0.90648 0.92438 1.44293 1.03014 1.00230 1.85026 1.19471 0.83100 1.06453 1.29320 0.90996 1.25760 1.01249 1.00166 0.97283 1.70161 1.36207 1.17834 1.33836 0.85354 0.81035 0.78122 0.76481 1.21695 1.22142 1.19264 1.20734 0.93530 0.86413 0.93583 0.94793 1.21729 0.98292 0.97379 1.01078 0.87148 0.88672 0.90298 0.91097 0.92076 0.92281 0.92001 0.86449 0.86717 0.74979 0.92849 0.91524 0.91027 0.93955 0.97763 0.92647 0.94219 0.94267 0.93299 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.72 13.89 67.78 0.94 -1.78 16 2 C -0.13 -2.00 5.31 -16.48 -0.09 -2.09 16 3 C -0.12 -1.44 10.03 71.24 0.71 -0.73 16 4 C -0.07 -1.34 4.67 29.85 0.14 -1.20 16 5 C -0.12 -2.08 5.68 29.85 0.17 -1.91 16 6 C 0.51 13.62 7.80 87.66 0.68 14.31 16 7 O -0.59 -21.70 15.65 -3.02 -0.05 -21.75 16 8 N -0.71 -18.47 4.57 -442.16 -2.02 -20.49 16 9 C 0.15 5.13 1.99 45.07 0.09 5.22 16 10 H 0.05 2.26 7.58 -2.39 -0.02 2.24 16 11 C -0.11 -3.82 5.46 30.62 0.17 -3.65 16 12 C -0.13 -5.20 6.08 30.67 0.19 -5.01 16 13 C 0.18 8.52 5.29 86.36 0.46 8.98 16 14 N -0.60 -29.64 2.99 -675.24 -2.02 -31.66 16 15 C -0.25 -13.64 8.61 84.03 0.72 -12.91 16 16 H 0.07 3.78 6.20 -2.91 -0.02 3.76 16 17 C -0.05 -2.73 4.96 84.86 0.42 -2.31 16 18 N -0.93 -54.76 11.14 21.65 0.24 -54.52 16 19 Si 0.96 44.95 29.58 68.60 2.03 46.98 16 20 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 C 0.16 6.42 3.03 44.97 0.14 6.55 16 24 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 25 C -0.13 -4.52 7.84 71.98 0.56 -3.95 16 26 H 0.11 1.21 8.04 -2.91 -0.02 1.18 16 27 H 0.09 1.35 7.99 -2.91 -0.02 1.32 16 28 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.72 8.06 -2.39 -0.02 0.70 16 30 H 0.06 0.77 8.08 -2.39 -0.02 0.75 16 31 H 0.06 1.33 7.94 -2.39 -0.02 1.31 16 32 H 0.06 1.38 8.06 -2.38 -0.02 1.36 16 33 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.41 7.96 8.60 -92.71 -0.80 7.17 16 36 H 0.05 1.85 8.14 -2.38 -0.02 1.84 16 37 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.07 2.53 8.14 -2.39 -0.02 2.52 16 39 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 41 H 0.06 3.06 6.06 -2.39 -0.01 3.04 16 42 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 43 H 0.04 1.50 7.40 -2.38 -0.02 1.48 16 44 H 0.05 1.87 7.66 -2.39 -0.02 1.85 16 45 H 0.08 2.11 7.79 -2.38 -0.02 2.09 16 Total: -1.00 -67.63 356.93 3.64 -63.99 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.15 Total: 17.91 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 5.31 Total: -0.48 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -3.80 Total: -106.66 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.05 Total: -21.75 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -67.63 3.64 -63.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507372823.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.432 kcal (2) G-P(sol) polarization free energy of solvation -67.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds