Wall clock time and date at job start Tue Mar 31 2020 02:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 119.99624 * 2 1 4 4 C 1.50692 * 119.99777 * 179.97438 * 2 1 3 5 5 C 1.53006 * 109.47092 * 95.00224 * 4 2 1 6 6 C 1.50699 * 109.47040 * 179.97438 * 5 4 2 7 7 O 1.21281 * 120.00167 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99581 * 179.97438 * 6 5 4 9 9 C 1.46501 * 119.99600 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.49899 * 35.00353 * 9 8 6 11 11 C 1.53041 * 109.49921 * 274.93390 * 9 8 6 12 12 C 1.53042 * 109.53777 * 178.68338 * 11 9 8 13 13 C 1.53195 * 109.31085 * 61.36768 * 12 11 9 14 14 N 1.46915 * 108.77801 * 305.36395 * 13 12 11 15 15 C 1.36934 * 120.63283 * 233.61254 * 14 13 12 16 16 H 1.08004 * 120.00498 * 150.16325 * 15 14 13 17 17 C 1.38814 * 119.99708 * 330.15820 * 15 14 13 18 18 N 1.31621 * 120.00202 * 344.49725 * 17 15 14 19 19 Si 1.86798 * 119.99852 * 164.49357 * 17 15 14 20 20 H 1.48503 * 109.47178 * 90.00298 * 19 17 15 21 21 H 1.48502 * 109.47367 * 210.00409 * 19 17 15 22 22 H 1.48500 * 109.47307 * 330.00455 * 19 17 15 23 23 C 1.46940 * 118.76745 * 53.58694 * 14 13 12 24 24 H 1.09002 * 109.55742 * 66.21192 * 23 14 13 25 25 C 1.52994 * 109.61874 * 186.64379 * 23 14 13 26 26 H 1.08005 * 119.99984 * 0.02562 * 1 2 3 27 27 H 1.07994 * 119.99912 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47278 * 269.99341 * 3 2 1 29 29 H 1.08995 * 109.47455 * 30.00247 * 3 2 1 30 30 H 1.09004 * 109.46769 * 150.00363 * 3 2 1 31 31 H 1.08999 * 109.47312 * 335.00209 * 4 2 1 32 32 H 1.09001 * 109.46977 * 214.99985 * 4 2 1 33 33 H 1.08995 * 109.47240 * 300.00116 * 5 4 2 34 34 H 1.08999 * 109.47054 * 59.99827 * 5 4 2 35 35 H 0.97000 * 120.00411 * 0.02562 * 8 6 5 36 36 H 1.08995 * 109.46517 * 298.70873 * 11 9 8 37 37 H 1.09004 * 109.45545 * 58.68627 * 11 9 8 38 38 H 1.08997 * 109.49710 * 181.32297 * 12 11 9 39 39 H 1.09006 * 109.49913 * 301.41511 * 12 11 9 40 40 H 1.08997 * 109.58075 * 65.15460 * 13 12 11 41 41 H 1.09003 * 109.58103 * 185.57597 * 13 12 11 42 42 H 0.96998 * 119.99912 * 180.02562 * 18 17 15 43 43 H 1.08995 * 109.47019 * 179.30444 * 25 23 14 44 44 H 1.09002 * 109.47124 * 299.30147 * 25 23 14 45 45 H 1.08997 * 109.46974 * 59.30090 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0634 -1.3051 0.0006 5 6 2.4274 -1.6845 -1.4363 6 6 3.1814 -2.9893 -1.4357 7 8 3.4052 -3.5599 -0.3891 8 7 3.6060 -3.5227 -2.5983 9 6 4.3385 -4.7914 -2.5977 10 1 3.9486 -5.4363 -1.8101 11 6 5.8246 -4.5232 -2.3494 12 6 6.5857 -5.8505 -2.3159 13 6 6.4407 -6.5519 -3.6702 14 7 5.0115 -6.6837 -3.9839 15 6 4.4755 -7.9042 -4.2970 16 1 3.4430 -8.1170 -4.0620 17 6 5.2591 -8.8680 -4.9166 18 7 6.4010 -8.5279 -5.4760 19 14 4.6932 -10.6478 -4.9564 20 1 3.8797 -10.8813 -6.1766 21 1 5.8774 -11.5436 -4.9720 22 1 3.8724 -10.9333 -3.7522 23 6 4.1674 -5.4813 -3.9548 24 1 4.4723 -4.8021 -4.7510 25 6 2.7022 -5.8774 -4.1477 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 2.2452 1.6197 -1.0276 29 1 1.4744 2.0647 0.5138 30 1 3.0159 1.1748 0.5138 31 1 1.4385 -2.0852 0.4352 32 1 2.9741 -1.1986 0.5900 33 1 1.5167 -1.7910 -2.0257 34 1 3.0523 -0.9044 -1.8709 35 1 3.4267 -3.0666 -3.4353 36 1 6.2197 -3.8982 -3.1502 37 1 5.9466 -4.0109 -1.3950 38 1 7.6401 -5.6604 -2.1157 39 1 6.1748 -6.4859 -1.5313 40 1 6.9313 -5.9598 -4.4426 41 1 6.8965 -7.5408 -3.6200 42 1 6.9484 -9.2013 -5.9092 43 1 2.0771 -4.9852 -4.1134 44 1 2.5826 -6.3679 -5.1137 45 1 2.4032 -6.5613 -3.3534 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507372826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:18 Heat of formation + Delta-G solvation = -19.952093 kcal Electronic energy + Delta-G solvation = -22537.570694 eV Core-core repulsion = 19362.182870 eV Total energy + Delta-G solvation = -3175.387824 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.78860 -37.79422 -36.46973 -34.25532 -32.59866 -31.78532 -31.20340 -29.11700 -27.50443 -26.31436 -25.09355 -24.43885 -21.92542 -20.68274 -20.07098 -19.27156 -18.59263 -16.81590 -16.36189 -15.74801 -15.65148 -14.89681 -14.78484 -14.28746 -13.94225 -13.77413 -13.68205 -13.41820 -13.24609 -12.95834 -12.57745 -12.44849 -12.19716 -11.92975 -11.68091 -11.53672 -11.20833 -11.10017 -11.01663 -10.92563 -10.73547 -10.56535 -10.28722 -10.12181 -10.04036 -9.87223 -9.58759 -9.37455 -9.17366 -8.63766 -8.44824 -6.66381 -5.79974 -3.24408 1.98988 2.87363 3.36691 3.43312 3.45052 3.49652 4.48367 4.60252 4.69879 4.91480 5.06617 5.14184 5.29603 5.31693 5.38262 5.39651 5.50510 5.55071 5.63575 5.69610 5.70606 5.80713 5.82278 5.97512 6.03720 6.10560 6.22252 6.34652 6.41184 6.42495 6.54167 6.65054 6.66628 6.74424 6.76236 6.86772 6.99550 7.08572 7.39809 7.66037 7.80126 7.81879 8.43265 8.50830 9.19982 9.82684 10.39436 11.28828 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.033690 B = 0.003479 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.916349 B = 8045.417788 C = 8457.626843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 C -0.121 4.121 4 C -0.071 4.071 5 C -0.134 4.134 6 C 0.508 3.492 7 O -0.545 6.545 8 N -0.720 5.720 9 C 0.130 3.870 10 H 0.085 0.915 11 C -0.116 4.116 12 C -0.140 4.140 13 C 0.170 3.830 14 N -0.582 5.582 15 C -0.253 4.253 16 H 0.070 0.930 17 C 0.005 3.995 18 N -0.902 5.902 19 Si 0.901 3.099 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.167 3.833 24 H 0.027 0.973 25 C -0.136 4.136 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.396 0.604 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.019 0.981 41 H 0.087 0.913 42 H 0.253 0.747 43 H 0.038 0.962 44 H 0.063 0.937 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.270 16.642 6.349 19.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.124 4.124 3 C -0.178 4.178 4 C -0.108 4.108 5 C -0.174 4.174 6 C 0.294 3.706 7 O -0.423 6.423 8 N -0.370 5.370 9 C 0.024 3.976 10 H 0.103 0.897 11 C -0.155 4.155 12 C -0.180 4.180 13 C 0.045 3.955 14 N -0.306 5.306 15 C -0.382 4.382 16 H 0.087 0.913 17 C -0.194 4.194 18 N -0.546 5.546 19 Si 0.731 3.269 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.204 1.204 23 C 0.060 3.940 24 H 0.044 0.956 25 C -0.193 4.193 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.229 0.771 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.037 0.963 41 H 0.105 0.895 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.082 0.918 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.984 16.083 6.998 18.879 hybrid contribution -0.254 -0.657 -0.561 0.901 sum -7.239 15.426 6.436 18.215 Atomic orbital electron populations 1.23710 0.95257 1.01825 1.02747 1.21815 0.95454 0.95785 0.99369 1.20885 1.00263 0.94502 1.02115 1.20429 1.00801 0.94066 0.95530 1.21632 1.01191 0.95522 0.99099 1.20624 0.79259 0.86716 0.83964 1.90695 1.57393 1.62755 1.31423 1.46180 1.57374 1.24900 1.08574 1.21769 0.91053 0.83470 1.01284 0.89727 1.21752 0.95224 0.98252 1.00252 1.22187 0.98065 0.96000 1.01776 1.20817 0.84829 1.00029 0.89827 1.44030 1.04413 1.02459 1.79662 1.19148 0.97365 0.89256 1.32436 0.91278 1.25086 0.97875 0.99045 0.97410 1.70026 1.14077 1.32483 1.38036 0.86323 0.77663 0.85029 0.77916 1.21404 1.21567 1.20423 1.20568 0.91839 0.89926 0.91700 0.95553 1.21808 0.95185 0.99690 1.02666 0.88622 0.88416 0.91425 0.91984 0.91741 0.90545 0.90521 0.89055 0.89106 0.77097 0.92842 0.93266 0.93046 0.92540 0.96303 0.89507 0.93650 0.94318 0.91802 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.65 13.89 29.01 0.40 -1.24 16 2 C -0.12 -1.09 5.31 -101.07 -0.54 -1.63 16 3 C -0.12 -0.87 10.03 36.00 0.36 -0.51 16 4 C -0.07 -0.74 4.67 -27.88 -0.13 -0.87 16 5 C -0.13 -1.36 5.68 -27.88 -0.16 -1.51 16 6 C 0.51 7.35 7.80 -10.99 -0.09 7.26 16 7 O -0.55 -10.17 15.65 5.56 0.09 -10.08 16 8 N -0.72 -10.28 4.57 -53.68 -0.25 -10.52 16 9 C 0.13 2.36 1.99 -67.81 -0.14 2.22 16 10 H 0.08 1.79 7.58 -51.93 -0.39 1.40 16 11 C -0.12 -2.11 5.46 -26.69 -0.15 -2.25 16 12 C -0.14 -2.80 6.08 -26.61 -0.16 -2.96 16 13 C 0.17 4.04 5.28 -3.71 -0.02 4.02 16 14 N -0.58 -14.21 2.99 -164.77 -0.49 -14.71 16 15 C -0.25 -6.73 8.58 -15.06 -0.13 -6.86 16 16 H 0.07 1.81 6.23 -52.48 -0.33 1.48 16 17 C 0.00 0.13 4.94 -17.43 -0.09 0.04 16 18 N -0.90 -25.79 11.23 55.49 0.62 -25.16 16 19 Si 0.90 21.52 29.58 -169.99 -5.03 16.49 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.17 3.36 3.03 -67.59 -0.21 3.16 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 25 C -0.14 -2.52 7.84 37.15 0.29 -2.22 16 26 H 0.10 0.67 8.04 -52.48 -0.42 0.25 16 27 H 0.10 0.81 7.99 -52.49 -0.42 0.39 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.40 8.06 -51.93 -0.42 -0.02 16 30 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 31 H 0.08 0.89 7.94 -51.93 -0.41 0.48 16 32 H 0.08 0.87 8.05 -51.93 -0.42 0.45 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.40 4.55 8.60 -40.82 -0.35 4.20 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.09 2.30 6.15 -51.93 -0.32 1.98 16 42 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.04 0.58 7.78 -51.93 -0.40 0.18 16 44 H 0.06 1.26 7.67 -51.93 -0.40 0.86 16 45 H 0.05 1.08 7.40 -51.93 -0.38 0.69 16 LS Contribution 357.08 15.07 5.38 5.38 Total: -1.00 -30.55 357.08 -8.44 -38.99 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -8.03 Total: 2.98 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -0.74 Total: -3.36 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.11 Total: -50.39 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.55 -8.44 -38.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507372826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.034 kcal (2) G-P(sol) polarization free energy of solvation -30.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds