Wall clock time and date at job start Tue Mar 31 2020 02:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 120.00008 * 2 1 4 4 C 1.50702 * 119.99459 * 180.02562 * 2 1 3 5 5 C 1.52999 * 109.46955 * 95.00054 * 4 2 1 6 6 C 1.50700 * 109.46971 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00091 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00203 * 179.97438 * 6 5 4 9 9 C 1.46499 * 120.00379 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.49568 * 325.06755 * 9 8 6 11 11 C 1.53042 * 109.52657 * 85.14557 * 9 8 6 12 12 C 1.53042 * 109.53382 * 58.60398 * 11 9 8 13 13 C 1.53192 * 109.31411 * 61.36983 * 12 11 9 14 14 N 1.46958 * 108.88353 * 305.43958 * 13 12 11 15 15 C 1.36937 * 120.65347 * 233.53156 * 14 13 12 16 16 H 1.08005 * 120.00271 * 150.81123 * 15 14 13 17 17 C 1.38813 * 120.00086 * 330.80205 * 15 14 13 18 18 N 1.31624 * 119.99931 * 160.81076 * 17 15 14 19 19 Si 1.86805 * 120.00073 * 340.82028 * 17 15 14 20 20 H 1.48503 * 109.47233 * 92.24935 * 19 17 15 21 21 H 1.48493 * 109.46894 * 212.25331 * 19 17 15 22 22 H 1.48502 * 109.46729 * 332.25401 * 19 17 15 23 23 C 1.46931 * 118.71879 * 53.35900 * 14 13 12 24 24 H 1.09001 * 109.58735 * 66.49765 * 23 14 13 25 25 C 1.52999 * 109.58716 * 186.77888 * 23 14 13 26 26 H 1.07997 * 120.00143 * 180.02562 * 1 2 3 27 27 H 1.07998 * 119.99629 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46911 * 270.00339 * 3 2 1 29 29 H 1.08992 * 109.46949 * 30.00672 * 3 2 1 30 30 H 1.08997 * 109.46585 * 150.00112 * 3 2 1 31 31 H 1.08993 * 109.47492 * 334.99737 * 4 2 1 32 32 H 1.09002 * 109.46767 * 214.99684 * 4 2 1 33 33 H 1.09003 * 109.47765 * 59.99786 * 5 4 2 34 34 H 1.09002 * 109.47080 * 299.99438 * 5 4 2 35 35 H 0.97000 * 119.99812 * 0.02562 * 8 6 5 36 36 H 1.09000 * 109.46028 * 178.62492 * 11 9 8 37 37 H 1.09005 * 109.46143 * 298.58782 * 11 9 8 38 38 H 1.09008 * 109.49401 * 181.31721 * 12 11 9 39 39 H 1.08999 * 109.49932 * 301.41352 * 12 11 9 40 40 H 1.08999 * 109.58579 * 65.14814 * 13 12 11 41 41 H 1.08993 * 109.58547 * 185.43418 * 13 12 11 42 42 H 0.96999 * 119.99753 * 180.02562 * 18 17 15 43 43 H 1.09003 * 109.47016 * 179.71417 * 25 23 14 44 44 H 1.09007 * 109.47113 * 59.72025 * 25 23 14 45 45 H 1.08999 * 109.47441 * 299.71485 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3052 -0.0006 5 6 2.4273 -1.6833 -1.4378 6 6 3.1812 -2.9882 -1.4383 7 8 3.4050 -3.5597 -0.3922 8 7 3.6058 -3.5207 -2.6013 9 6 4.3383 -4.7894 -2.6019 10 1 4.9645 -4.8484 -1.7117 11 6 3.3448 -5.9536 -2.6056 12 6 2.4434 -5.8531 -3.8383 13 6 3.3025 -5.9467 -5.1032 14 7 4.3550 -4.9231 -5.0401 15 6 4.5253 -4.0326 -6.0664 16 1 4.9205 -3.0475 -5.8667 17 6 4.1901 -4.3961 -7.3635 18 7 3.9881 -3.4687 -8.2754 19 14 4.0256 -6.2013 -7.8147 20 1 2.6129 -6.6269 -7.6462 21 1 4.4366 -6.3977 -9.2280 22 1 4.8965 -7.0144 -6.9283 23 6 5.2189 -4.8709 -3.8527 24 1 5.8341 -5.7697 -3.8086 25 6 6.1194 -3.6363 -3.9274 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5399 0.9353 0.0004 28 1 2.2451 1.6198 -1.0277 29 1 1.4745 2.0647 0.5139 30 1 3.0159 1.1747 0.5138 31 1 1.4385 -2.0857 0.4334 32 1 2.9742 -1.1992 0.5889 33 1 3.0522 -0.9029 -1.8718 34 1 1.5165 -1.7893 -2.0272 35 1 3.4265 -3.0638 -3.4380 36 1 3.8907 -6.8967 -2.6307 37 1 2.7333 -5.9120 -1.7042 38 1 1.7208 -6.6693 -3.8280 39 1 1.9158 -4.8994 -3.8265 40 1 3.7595 -6.9345 -5.1622 41 1 2.6791 -5.7794 -5.9814 42 1 3.7535 -3.7227 -9.1817 43 1 6.7558 -3.5967 -3.0434 44 1 5.5024 -2.7387 -3.9714 45 1 6.7415 -3.6937 -4.8206 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507372828.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:21 Heat of formation + Delta-G solvation = -13.593645 kcal Electronic energy + Delta-G solvation = -23114.976553 eV Core-core repulsion = 19939.864452 eV Total energy + Delta-G solvation = -3175.112101 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.86779 -38.00882 -36.36439 -34.00787 -32.67584 -31.86561 -31.22098 -29.86690 -27.39135 -26.54748 -24.99641 -24.47357 -22.42970 -20.98373 -20.07589 -18.90769 -18.45806 -16.81884 -16.53042 -15.65854 -15.48955 -15.36101 -14.72781 -14.35039 -14.20870 -13.76253 -13.60187 -13.52538 -13.36983 -13.00179 -12.58732 -12.44133 -12.16753 -11.99124 -11.81217 -11.71687 -11.57558 -11.27283 -11.09157 -10.89723 -10.83400 -10.66347 -10.53758 -10.28931 -9.97907 -9.57802 -9.53832 -9.48264 -9.08667 -8.68035 -8.53379 -7.00230 -6.00374 -3.39110 2.10696 2.98153 3.28975 3.45857 3.48307 3.64017 4.48680 4.72337 4.81419 4.83092 5.07411 5.17881 5.21284 5.31437 5.38630 5.43630 5.46540 5.51872 5.52876 5.69332 5.71381 5.80600 5.81854 5.94438 5.95232 6.06099 6.09195 6.14200 6.26147 6.29318 6.35438 6.43594 6.50836 6.53533 6.68152 6.73197 6.77985 6.84620 6.92710 7.05886 7.90778 8.00344 8.27888 8.62270 8.87494 9.66784 10.04240 11.14776 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020745 B = 0.004622 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.376575 B = 6056.986699 C = 6465.720498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 C -0.121 4.121 4 C -0.068 4.068 5 C -0.135 4.135 6 C 0.509 3.491 7 O -0.559 6.559 8 N -0.704 5.704 9 C 0.133 3.867 10 H 0.079 0.921 11 C -0.122 4.122 12 C -0.132 4.132 13 C 0.125 3.875 14 N -0.602 5.602 15 C -0.264 4.264 16 H 0.092 0.908 17 C 0.028 3.972 18 N -0.908 5.908 19 Si 0.883 3.117 20 H -0.289 1.289 21 H -0.305 1.305 22 H -0.271 1.271 23 C 0.163 3.837 24 H 0.043 0.957 25 C -0.136 4.136 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.411 0.589 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.024 0.976 41 H 0.072 0.928 42 H 0.262 0.738 43 H 0.041 0.959 44 H 0.057 0.943 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.457 3.696 13.393 14.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.123 4.123 3 C -0.178 4.178 4 C -0.106 4.106 5 C -0.175 4.175 6 C 0.295 3.705 7 O -0.438 6.438 8 N -0.355 5.355 9 C 0.026 3.974 10 H 0.097 0.903 11 C -0.161 4.161 12 C -0.171 4.171 13 C 0.000 4.000 14 N -0.327 5.327 15 C -0.392 4.392 16 H 0.110 0.890 17 C -0.172 4.172 18 N -0.550 5.550 19 Si 0.714 3.286 20 H -0.217 1.217 21 H -0.233 1.233 22 H -0.196 1.196 23 C 0.056 3.944 24 H 0.061 0.939 25 C -0.193 4.193 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.248 0.752 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.042 0.958 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.293 3.339 13.923 14.692 hybrid contribution -0.339 -0.909 -0.951 1.359 sum -3.632 2.430 12.972 13.688 Atomic orbital electron populations 1.23690 0.95265 1.01765 1.02909 1.21822 0.95458 0.95829 0.99228 1.20887 1.00158 0.94463 1.02278 1.20407 1.00602 0.93965 0.95578 1.21619 1.01402 0.95672 0.98856 1.20628 0.79298 0.86683 0.83853 1.90646 1.57944 1.63468 1.31738 1.46051 1.56358 1.23853 1.09218 1.21469 0.93332 0.82894 0.99658 0.90290 1.21781 0.98229 0.97978 0.98074 1.21952 0.97931 1.01211 0.96038 1.21360 0.90364 0.91779 0.96529 1.44477 1.32949 1.37132 1.18152 1.18899 1.41360 0.94051 0.84853 0.89042 1.25308 0.99304 0.96894 0.95658 1.69808 1.49418 1.32133 1.03673 0.86961 0.77445 0.87660 0.76560 1.21722 1.23338 1.19617 1.20743 0.90367 0.97272 0.86005 0.93930 1.21791 0.98921 0.97908 1.00693 0.88498 0.88634 0.91256 0.92036 0.91791 0.90754 0.90643 0.88949 0.89002 0.75249 0.91871 0.92541 0.92992 0.91878 0.95793 0.90972 0.92769 0.94006 0.92353 0.91509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.93 13.89 29.01 0.40 -1.53 16 2 C -0.12 -1.26 5.31 -101.07 -0.54 -1.80 16 3 C -0.12 -1.05 10.03 36.01 0.36 -0.69 16 4 C -0.07 -0.79 4.67 -27.88 -0.13 -0.92 16 5 C -0.14 -1.65 5.68 -27.88 -0.16 -1.81 16 6 C 0.51 7.85 7.80 -10.99 -0.09 7.77 16 7 O -0.56 -10.20 15.64 5.55 0.09 -10.12 16 8 N -0.70 -11.19 3.46 -53.69 -0.19 -11.38 16 9 C 0.13 2.22 2.32 -67.81 -0.16 2.06 16 10 H 0.08 1.33 7.58 -51.93 -0.39 0.94 16 11 C -0.12 -1.99 5.58 -26.69 -0.15 -2.14 16 12 C -0.13 -2.30 5.93 -26.61 -0.16 -2.46 16 13 C 0.12 2.59 4.20 -3.69 -0.02 2.57 16 14 N -0.60 -13.00 2.42 -164.75 -0.40 -13.40 16 15 C -0.26 -6.66 9.05 -15.06 -0.14 -6.80 16 16 H 0.09 2.42 6.39 -52.48 -0.34 2.09 16 17 C 0.03 0.75 5.25 -17.43 -0.09 0.66 16 18 N -0.91 -26.45 13.97 55.49 0.78 -25.68 16 19 Si 0.88 21.66 24.34 -169.99 -4.14 17.52 16 20 H -0.29 -6.92 6.62 56.52 0.37 -6.55 16 21 H -0.31 -7.73 7.11 56.52 0.40 -7.32 16 22 H -0.27 -6.58 6.63 56.52 0.37 -6.21 16 23 C 0.16 2.99 3.19 -67.60 -0.22 2.78 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 C -0.14 -2.36 7.72 37.16 0.29 -2.07 16 26 H 0.10 0.92 7.99 -52.49 -0.42 0.51 16 27 H 0.10 0.81 8.04 -52.49 -0.42 0.39 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.47 8.06 -51.93 -0.42 0.05 16 30 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.07 0.93 7.94 -51.93 -0.41 0.52 16 32 H 0.07 0.92 8.06 -51.93 -0.42 0.50 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.41 6.82 7.78 -40.82 -0.32 6.51 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.82 8.14 -51.92 -0.42 0.39 16 39 H 0.06 1.13 7.53 -51.93 -0.39 0.74 16 40 H 0.02 0.50 7.02 -51.93 -0.36 0.14 16 41 H 0.07 1.64 4.63 -51.93 -0.24 1.40 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 1.03 6.39 -51.93 -0.33 0.70 16 45 H 0.07 1.26 7.63 -51.93 -0.40 0.86 16 LS Contribution 347.38 15.07 5.23 5.23 Total: -1.00 -29.11 347.38 -7.26 -36.37 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -7.85 Total: 5.82 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -0.78 Total: -4.37 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.19 Total: -50.46 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.14 Total: 17.52 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.11 -7.26 -36.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507372828.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.774 kcal (2) G-P(sol) polarization free energy of solvation -29.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds