Wall clock time and date at job start Tue Mar 31 2020 02:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 120.00008 * 2 1 4 4 C 1.50702 * 119.99459 * 180.02562 * 2 1 3 5 5 C 1.52999 * 109.46955 * 95.00054 * 4 2 1 6 6 C 1.50700 * 109.46971 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00091 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00203 * 179.97438 * 6 5 4 9 9 C 1.46499 * 120.00379 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.49568 * 325.06755 * 9 8 6 11 11 C 1.53042 * 109.52657 * 85.14557 * 9 8 6 12 12 C 1.53042 * 109.53382 * 58.60398 * 11 9 8 13 13 C 1.53192 * 109.31411 * 61.36983 * 12 11 9 14 14 N 1.46958 * 108.88353 * 305.43958 * 13 12 11 15 15 C 1.36937 * 120.65347 * 233.53156 * 14 13 12 16 16 H 1.08005 * 120.00271 * 150.81123 * 15 14 13 17 17 C 1.38813 * 120.00086 * 330.80205 * 15 14 13 18 18 N 1.31624 * 119.99931 * 160.81076 * 17 15 14 19 19 Si 1.86805 * 120.00073 * 340.82028 * 17 15 14 20 20 H 1.48503 * 109.47233 * 92.24935 * 19 17 15 21 21 H 1.48493 * 109.46894 * 212.25331 * 19 17 15 22 22 H 1.48502 * 109.46729 * 332.25401 * 19 17 15 23 23 C 1.46931 * 118.71879 * 53.35900 * 14 13 12 24 24 H 1.09001 * 109.58735 * 66.49765 * 23 14 13 25 25 C 1.52999 * 109.58716 * 186.77888 * 23 14 13 26 26 H 1.07997 * 120.00143 * 180.02562 * 1 2 3 27 27 H 1.07998 * 119.99629 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46911 * 270.00339 * 3 2 1 29 29 H 1.08992 * 109.46949 * 30.00672 * 3 2 1 30 30 H 1.08997 * 109.46585 * 150.00112 * 3 2 1 31 31 H 1.08993 * 109.47492 * 334.99737 * 4 2 1 32 32 H 1.09002 * 109.46767 * 214.99684 * 4 2 1 33 33 H 1.09003 * 109.47765 * 59.99786 * 5 4 2 34 34 H 1.09002 * 109.47080 * 299.99438 * 5 4 2 35 35 H 0.97000 * 119.99812 * 0.02562 * 8 6 5 36 36 H 1.09000 * 109.46028 * 178.62492 * 11 9 8 37 37 H 1.09005 * 109.46143 * 298.58782 * 11 9 8 38 38 H 1.09008 * 109.49401 * 181.31721 * 12 11 9 39 39 H 1.08999 * 109.49932 * 301.41352 * 12 11 9 40 40 H 1.08999 * 109.58579 * 65.14814 * 13 12 11 41 41 H 1.08993 * 109.58547 * 185.43418 * 13 12 11 42 42 H 0.96999 * 119.99753 * 180.02562 * 18 17 15 43 43 H 1.09003 * 109.47016 * 179.71417 * 25 23 14 44 44 H 1.09007 * 109.47113 * 59.72025 * 25 23 14 45 45 H 1.08999 * 109.47441 * 299.71485 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3052 -0.0006 5 6 2.4273 -1.6833 -1.4378 6 6 3.1812 -2.9882 -1.4383 7 8 3.4050 -3.5597 -0.3922 8 7 3.6058 -3.5207 -2.6013 9 6 4.3383 -4.7894 -2.6019 10 1 4.9645 -4.8484 -1.7117 11 6 3.3448 -5.9536 -2.6056 12 6 2.4434 -5.8531 -3.8383 13 6 3.3025 -5.9467 -5.1032 14 7 4.3550 -4.9231 -5.0401 15 6 4.5253 -4.0326 -6.0664 16 1 4.9205 -3.0475 -5.8667 17 6 4.1901 -4.3961 -7.3635 18 7 3.9881 -3.4687 -8.2754 19 14 4.0256 -6.2013 -7.8147 20 1 2.6129 -6.6269 -7.6462 21 1 4.4366 -6.3977 -9.2280 22 1 4.8965 -7.0144 -6.9283 23 6 5.2189 -4.8709 -3.8527 24 1 5.8341 -5.7697 -3.8086 25 6 6.1194 -3.6363 -3.9274 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5399 0.9353 0.0004 28 1 2.2451 1.6198 -1.0277 29 1 1.4745 2.0647 0.5139 30 1 3.0159 1.1747 0.5138 31 1 1.4385 -2.0857 0.4334 32 1 2.9742 -1.1992 0.5889 33 1 3.0522 -0.9029 -1.8718 34 1 1.5165 -1.7893 -2.0272 35 1 3.4265 -3.0638 -3.4380 36 1 3.8907 -6.8967 -2.6307 37 1 2.7333 -5.9120 -1.7042 38 1 1.7208 -6.6693 -3.8280 39 1 1.9158 -4.8994 -3.8265 40 1 3.7595 -6.9345 -5.1622 41 1 2.6791 -5.7794 -5.9814 42 1 3.7535 -3.7227 -9.1817 43 1 6.7558 -3.5967 -3.0434 44 1 5.5024 -2.7387 -3.9714 45 1 6.7415 -3.6937 -4.8206 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507372828.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:20 Heat of formation + Delta-G solvation = -30.157121 kcal Electronic energy + Delta-G solvation = -23115.694799 eV Core-core repulsion = 19939.864452 eV Total energy + Delta-G solvation = -3175.830347 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.20228 -39.42607 -37.26218 -35.60436 -34.20886 -33.49563 -32.48133 -31.25963 -28.13966 -27.98297 -26.69741 -25.62247 -24.01609 -22.42603 -21.44379 -20.36120 -19.29422 -18.36255 -18.00697 -17.22594 -16.89784 -16.71342 -15.82153 -15.71546 -15.50449 -15.24028 -14.96728 -14.71580 -14.54849 -14.28146 -14.03761 -13.85050 -13.49914 -13.35006 -13.18842 -12.93745 -12.71879 -12.51524 -12.50863 -12.27009 -12.15045 -11.94677 -11.90092 -11.79538 -11.60862 -11.37486 -11.19504 -10.79413 -10.61198 -9.89158 -9.88926 -8.84625 -8.08744 -5.41807 1.33041 1.33158 1.45444 1.51997 1.75339 2.41835 2.47321 3.11088 3.30390 3.75841 3.93627 3.98492 4.02475 4.08750 4.12440 4.25112 4.32308 4.37940 4.49491 4.56082 4.61610 4.69731 4.73140 4.83458 4.87637 4.89873 4.94655 5.00063 5.01380 5.07336 5.10876 5.16515 5.18965 5.22103 5.28288 5.38587 5.47674 5.70175 5.77631 5.95763 6.01316 6.24311 6.71509 6.96782 7.36110 7.69155 8.09810 9.09908 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020745 B = 0.004622 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.376575 B = 6056.986699 C = 6465.720498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.133 4.133 3 C -0.121 4.121 4 C -0.062 4.062 5 C -0.129 4.129 6 C 0.510 3.490 7 O -0.586 6.586 8 N -0.703 5.703 9 C 0.139 3.861 10 H 0.083 0.917 11 C -0.116 4.116 12 C -0.122 4.122 13 C 0.120 3.880 14 N -0.610 5.610 15 C -0.232 4.232 16 H 0.075 0.925 17 C -0.029 4.029 18 N -0.955 5.955 19 Si 0.934 3.066 20 H -0.281 1.281 21 H -0.320 1.320 22 H -0.265 1.265 23 C 0.160 3.840 24 H 0.051 0.949 25 C -0.129 4.129 26 H 0.095 0.905 27 H 0.110 0.890 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.408 0.592 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.029 0.971 41 H 0.050 0.950 42 H 0.258 0.742 43 H 0.067 0.933 44 H 0.051 0.949 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.873 3.334 15.089 15.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.134 4.134 3 C -0.177 4.177 4 C -0.100 4.100 5 C -0.169 4.169 6 C 0.298 3.702 7 O -0.467 6.467 8 N -0.354 5.354 9 C 0.032 3.968 10 H 0.101 0.899 11 C -0.155 4.155 12 C -0.161 4.161 13 C -0.004 4.004 14 N -0.336 5.336 15 C -0.361 4.361 16 H 0.092 0.908 17 C -0.224 4.224 18 N -0.601 5.601 19 Si 0.765 3.235 20 H -0.208 1.208 21 H -0.250 1.250 22 H -0.189 1.189 23 C 0.054 3.946 24 H 0.068 0.932 25 C -0.187 4.187 26 H 0.113 0.887 27 H 0.128 0.872 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.244 0.756 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.047 0.953 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.711 2.951 15.667 16.369 hybrid contribution -0.187 -0.771 -1.368 1.582 sum -3.898 2.180 14.299 14.980 Atomic orbital electron populations 1.23849 0.95205 1.02440 1.01929 1.21849 0.95693 0.95704 1.00105 1.20905 1.00226 0.93910 1.02688 1.20324 1.00224 0.94543 0.94926 1.21626 1.01494 0.94180 0.99555 1.21110 0.78749 0.87281 0.83032 1.90634 1.59079 1.64452 1.32569 1.46070 1.56347 1.23670 1.09297 1.21343 0.93365 0.83561 0.98522 0.89895 1.21743 0.97980 0.98328 0.97438 1.21834 0.97841 1.01787 0.94663 1.21386 0.90268 0.91413 0.97376 1.44577 1.34170 1.36701 1.18110 1.18882 1.37981 0.93849 0.85421 0.90781 1.25805 1.00926 0.99569 0.96076 1.69919 1.52699 1.33630 1.03897 0.86120 0.77788 0.84265 0.75323 1.20838 1.24972 1.18943 1.20916 0.90459 0.97934 0.85242 0.93152 1.21716 0.98719 0.97245 1.00987 0.88656 0.87212 0.90919 0.90910 0.91704 0.91932 0.91408 0.87560 0.88116 0.75608 0.90602 0.92278 0.90853 0.92524 0.95348 0.93178 0.93340 0.91393 0.92969 0.93465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.45 13.89 67.78 0.94 -2.51 16 2 C -0.13 -2.49 5.31 -16.49 -0.09 -2.58 16 3 C -0.12 -1.86 10.03 71.24 0.71 -1.14 16 4 C -0.06 -1.37 4.67 29.85 0.14 -1.23 16 5 C -0.13 -2.92 5.68 29.85 0.17 -2.75 16 6 C 0.51 14.91 7.80 87.66 0.68 15.60 16 7 O -0.59 -20.53 15.64 -3.04 -0.05 -20.58 16 8 N -0.70 -21.17 3.46 -442.16 -1.53 -22.70 16 9 C 0.14 4.30 2.32 45.07 0.10 4.41 16 10 H 0.08 2.58 7.58 -2.39 -0.02 2.56 16 11 C -0.12 -3.47 5.58 30.62 0.17 -3.30 16 12 C -0.12 -3.94 5.93 30.67 0.18 -3.76 16 13 C 0.12 4.75 4.20 86.36 0.36 5.11 16 14 N -0.61 -25.55 2.42 -675.14 -1.63 -27.18 16 15 C -0.23 -11.69 9.05 84.03 0.76 -10.93 16 16 H 0.07 3.97 6.39 -2.91 -0.02 3.95 16 17 C -0.03 -1.59 5.25 84.86 0.45 -1.14 16 18 N -0.95 -56.90 13.97 21.65 0.30 -56.60 16 19 Si 0.93 44.90 24.34 68.60 1.67 46.57 16 20 H -0.28 -12.97 6.62 99.48 0.66 -12.31 16 21 H -0.32 -16.06 7.11 99.48 0.71 -15.35 16 22 H -0.26 -12.25 6.63 99.48 0.66 -11.59 16 23 C 0.16 5.57 3.19 44.97 0.14 5.72 16 24 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 25 C -0.13 -4.30 7.72 71.98 0.56 -3.75 16 26 H 0.10 1.67 7.99 -2.91 -0.02 1.65 16 27 H 0.11 1.59 8.04 -2.91 -0.02 1.57 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.07 0.95 8.06 -2.39 -0.02 0.93 16 30 H 0.06 0.97 8.08 -2.39 -0.02 0.96 16 31 H 0.06 1.51 7.94 -2.39 -0.02 1.49 16 32 H 0.07 1.58 8.06 -2.39 -0.02 1.57 16 33 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.41 13.00 7.78 -92.71 -0.72 12.28 16 36 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 39 H 0.06 1.90 7.53 -2.39 -0.02 1.88 16 40 H 0.03 1.11 7.02 -2.39 -0.02 1.09 16 41 H 0.05 2.21 4.63 -2.39 -0.01 2.20 16 42 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 43 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.05 1.79 6.39 -2.38 -0.02 1.77 16 45 H 0.05 1.74 7.63 -2.39 -0.02 1.73 16 Total: -1.00 -61.71 347.38 4.18 -57.52 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.14 Total: 25.23 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 5.29 Total: -2.26 kcal Atomic # 7 Polarization: -103.62 SS G_CDS: -2.86 Total: -106.48 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.05 Total: -20.58 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.67 Total: 46.57 kcal Total: -61.71 4.18 -57.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507372828.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.367 kcal (2) G-P(sol) polarization free energy of solvation -61.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds