Wall clock time and date at job start Tue Mar 31 2020 02:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 120.00333 * 2 1 4 4 C 1.52992 * 109.47361 * 124.99414 * 3 2 1 5 5 C 1.53001 * 109.47092 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.47310 * 180.02562 * 5 4 3 7 7 O 1.21277 * 119.99659 * 0.02562 * 6 5 4 8 8 N 1.34768 * 120.00205 * 180.02562 * 6 5 4 9 9 C 1.48149 * 127.83973 * 359.97265 * 8 6 5 10 10 C 1.54393 * 104.61751 * 140.41447 * 9 8 6 11 11 H 1.08997 * 110.42690 * 264.95396 * 10 9 8 12 12 C 1.53000 * 110.34131 * 142.74091 * 10 9 8 13 13 C 1.54283 * 104.95913 * 23.86667 * 10 9 8 14 14 H 1.09006 * 110.34073 * 118.97441 * 13 10 9 15 15 C 1.52997 * 110.34549 * 241.12858 * 13 10 9 16 16 N 1.46505 * 109.47212 * 185.00108 * 15 13 10 17 17 C 1.36936 * 119.99992 * 179.97438 * 16 15 13 18 18 H 1.08006 * 119.99834 * 0.02562 * 17 16 15 19 19 C 1.38801 * 120.00093 * 180.02562 * 17 16 15 20 20 N 1.31622 * 120.00145 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00180 * 0.02562 * 19 17 16 22 22 H 1.48492 * 109.47586 * 89.99558 * 21 19 17 23 23 H 1.48505 * 109.47293 * 210.00502 * 21 19 17 24 24 H 1.48505 * 109.46772 * 329.99807 * 21 19 17 25 25 C 1.48147 * 127.83848 * 179.97438 * 8 6 5 26 26 H 1.08000 * 120.00305 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.00401 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99784 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.47019 * 4.99385 * 3 2 1 30 30 H 1.08999 * 109.47035 * 245.00076 * 3 2 1 31 31 H 1.09007 * 109.46695 * 60.00389 * 4 3 2 32 32 H 1.08999 * 109.47586 * 300.00324 * 4 3 2 33 33 H 1.08998 * 109.46964 * 60.00593 * 5 4 3 34 34 H 1.09005 * 109.47290 * 299.99872 * 5 4 3 35 35 H 1.09000 * 110.40472 * 21.62932 * 9 8 6 36 36 H 1.08994 * 110.50897 * 259.25068 * 9 8 6 37 37 H 1.08998 * 109.46644 * 304.46063 * 12 10 9 38 38 H 1.08998 * 109.47380 * 64.46179 * 12 10 9 39 39 H 1.09000 * 109.46707 * 184.46357 * 12 10 9 40 40 H 1.09002 * 109.47153 * 65.00100 * 15 13 10 41 41 H 1.09001 * 109.46832 * 305.00291 * 15 13 10 42 42 H 0.96996 * 119.99606 * 0.02562 * 16 15 13 43 43 H 0.97010 * 119.99864 * 180.02562 * 20 19 17 44 44 H 1.09000 * 110.41275 * 100.79899 * 25 8 6 45 45 H 1.09006 * 110.40750 * 338.36450 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3331 1.1816 5 6 3.7995 2.6584 1.1819 6 6 4.7569 2.6858 2.3455 7 8 4.8216 1.7384 3.0999 8 7 5.5410 3.7630 2.5478 9 6 5.6051 5.0046 1.7421 10 6 5.7560 6.1362 2.7815 11 1 4.7825 6.5622 3.0241 12 6 6.6941 7.2229 2.2523 13 6 6.3688 5.4568 4.0238 14 1 7.3374 5.8985 4.2581 15 6 5.4238 5.5841 5.2202 16 7 6.0731 5.0398 6.4155 17 6 5.4139 5.0464 7.6157 18 1 4.4153 5.4525 7.6812 19 6 6.0292 4.5312 8.7482 20 7 5.3955 4.5370 9.9018 21 14 7.7568 3.8295 8.6352 22 1 8.7464 4.9067 8.8909 23 1 7.9219 2.7551 9.6471 24 1 7.9753 3.2686 7.2776 25 6 6.5346 3.9742 3.6262 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5401 -0.9353 0.0004 28 1 1.8499 -0.9353 0.0004 29 1 1.3586 2.1317 0.0895 30 1 2.6213 1.4025 -0.9314 31 1 3.7399 0.5065 1.0921 32 1 2.4772 1.2356 2.1130 33 1 3.0943 3.4846 1.2717 34 1 4.3574 2.7562 0.2506 35 1 4.6865 5.1341 1.1698 36 1 6.4673 4.9833 1.0756 37 1 7.6496 6.7758 1.9780 38 1 6.2479 7.6929 1.3759 39 1 6.8532 7.9739 3.0261 40 1 4.5073 5.0292 5.0200 41 1 5.1840 6.6348 5.3836 42 1 6.9701 4.6755 6.3567 43 1 5.8257 4.1773 10.6934 44 1 7.5430 3.7906 3.2553 45 1 6.3172 3.3264 4.4755 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569847071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:05 Heat of formation + Delta-G solvation = -18.575811 kcal Electronic energy + Delta-G solvation = -22066.274895 eV Core-core repulsion = 18890.946751 eV Total energy + Delta-G solvation = -3175.328144 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.11847 -38.11564 -36.10063 -34.73359 -32.90760 -32.43087 -31.51414 -29.54507 -27.62998 -26.37856 -25.47193 -23.15460 -22.04783 -21.02068 -20.10744 -19.77265 -19.05767 -17.64961 -16.86825 -16.31211 -15.59835 -15.57853 -14.76732 -14.58217 -14.42562 -13.86243 -13.80669 -13.57607 -13.21705 -12.99294 -12.76113 -12.61605 -12.48961 -12.13529 -11.88860 -11.76366 -11.64603 -11.57148 -11.40763 -11.12859 -10.93163 -10.87283 -10.65521 -10.57207 -10.27133 -10.04931 -9.71353 -9.54327 -9.53062 -8.86664 -8.61072 -7.19288 -5.72418 -3.07914 2.05638 2.75129 3.02048 3.41360 3.44106 3.49144 4.38628 4.50177 4.56469 4.63614 4.72972 4.75788 4.88295 5.00061 5.06560 5.23778 5.26203 5.28898 5.36027 5.38053 5.41129 5.46713 5.56384 5.58911 5.63504 5.64045 5.70388 5.85590 5.88982 5.97557 6.03140 6.08426 6.14297 6.20235 6.29555 6.39156 6.41243 6.54399 6.65133 6.80248 7.66592 8.03015 8.28788 8.46345 9.25150 9.97547 10.16945 11.46152 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.004042 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.025801 B = 6926.376730 C = 8118.986000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 C -0.094 4.094 4 C -0.101 4.101 5 C -0.134 4.134 6 C 0.529 3.471 7 O -0.535 6.535 8 N -0.622 5.622 9 C 0.105 3.895 10 C -0.101 4.101 11 H 0.085 0.915 12 C -0.141 4.141 13 C -0.109 4.109 14 H 0.087 0.913 15 C 0.168 3.832 16 N -0.755 5.755 17 C -0.242 4.242 18 H 0.089 0.911 19 C 0.004 3.996 20 N -0.935 5.935 21 Si 0.884 3.116 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 C 0.106 3.894 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.026 0.974 41 H 0.029 0.971 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.064 0.936 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.172 -0.107 -25.556 25.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.169 4.169 3 C -0.132 4.132 4 C -0.139 4.139 5 C -0.174 4.174 6 C 0.318 3.682 7 O -0.411 6.411 8 N -0.357 5.357 9 C -0.018 4.018 10 C -0.121 4.121 11 H 0.103 0.897 12 C -0.198 4.198 13 C -0.129 4.129 14 H 0.105 0.895 15 C 0.041 3.959 16 N -0.401 5.401 17 C -0.372 4.372 18 H 0.107 0.893 19 C -0.191 4.191 20 N -0.583 5.583 21 Si 0.714 3.286 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.016 4.016 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.126 0.874 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.044 0.956 41 H 0.046 0.954 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.398 -0.698 -24.991 25.115 hybrid contribution 1.239 -0.450 0.109 1.322 sum -1.160 -1.148 -24.882 24.936 Atomic orbital electron populations 1.23849 0.95984 1.01804 1.01815 1.22963 0.96045 0.98609 0.99287 1.20793 0.98196 0.95514 0.98662 1.21305 0.97735 0.96169 0.98735 1.21655 0.98040 1.00591 0.97086 1.20326 0.80333 0.81041 0.86469 1.90747 1.68034 1.34807 1.47522 1.49000 1.40031 1.16713 1.29951 1.22488 1.01813 0.83571 0.93924 1.22114 1.00468 0.95043 0.94469 0.89669 1.21814 0.98863 0.98161 1.01009 1.22470 1.00730 0.94426 0.95260 0.89486 1.20652 0.93803 0.96767 0.84712 1.42714 1.17015 1.74558 1.05788 1.19036 0.99926 1.33948 0.84314 0.89325 1.24664 0.98016 1.01058 0.95407 1.69707 1.37543 1.51857 0.99197 0.86543 0.85934 0.78948 0.77131 1.21104 1.21690 1.20268 1.22454 0.90935 0.97041 0.91209 0.88618 0.88619 0.87385 0.91432 0.91033 0.91056 0.90820 0.88993 0.89212 0.90518 0.91091 0.92534 0.92602 0.91877 0.95625 0.95361 0.80718 0.93091 0.91800 0.88762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.60 14.32 29.02 0.42 -1.18 16 2 C -0.15 -1.29 9.52 -36.02 -0.34 -1.64 16 3 C -0.09 -0.76 5.66 -27.89 -0.16 -0.92 16 4 C -0.10 -1.06 4.49 -26.73 -0.12 -1.18 16 5 C -0.13 -1.34 4.68 -27.88 -0.13 -1.47 16 6 C 0.53 7.94 7.91 -10.99 -0.09 7.85 16 7 O -0.53 -10.62 16.25 5.56 0.09 -10.53 16 8 N -0.62 -8.57 3.32 -169.30 -0.56 -9.13 16 9 C 0.11 1.01 6.46 -2.40 -0.02 1.00 16 10 C -0.10 -1.09 3.31 -89.22 -0.30 -1.38 16 11 H 0.08 0.94 7.71 -51.93 -0.40 0.54 16 12 C -0.14 -1.20 8.92 37.16 0.33 -0.87 16 13 C -0.11 -1.60 2.75 -89.22 -0.24 -1.85 16 14 H 0.09 1.23 7.71 -51.93 -0.40 0.83 16 15 C 0.17 3.29 5.37 -4.04 -0.02 3.26 16 16 N -0.76 -18.45 5.01 -59.91 -0.30 -18.75 16 17 C -0.24 -7.11 10.47 -15.06 -0.16 -7.27 16 18 H 0.09 2.78 8.06 -52.48 -0.42 2.36 16 19 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 20 N -0.93 -30.24 13.97 55.49 0.78 -29.46 16 21 Si 0.88 22.82 27.74 -169.99 -4.71 18.11 16 22 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 24 H -0.28 -6.76 6.52 56.52 0.37 -6.39 16 25 C 0.11 1.66 6.47 -2.41 -0.02 1.64 16 26 H 0.10 0.71 7.84 -52.49 -0.41 0.30 16 27 H 0.10 0.68 8.06 -52.49 -0.42 0.26 16 28 H 0.11 0.88 8.06 -52.49 -0.42 0.46 16 29 H 0.07 0.51 7.79 -51.92 -0.40 0.10 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.81 8.10 -51.92 -0.42 0.39 16 32 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 33 H 0.09 0.79 7.95 -51.93 -0.41 0.37 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.57 7.30 -51.93 -0.38 0.20 16 36 H 0.07 0.57 7.83 -51.93 -0.41 0.17 16 37 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.03 0.55 8.13 -51.93 -0.42 0.13 16 41 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.36 8.55 5.47 -40.82 -0.22 8.33 16 43 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.09 1.88 7.31 -51.93 -0.38 1.50 16 LS Contribution 363.52 15.07 5.48 5.48 Total: -1.00 -35.27 363.52 -8.25 -43.52 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -8.08 Total: 4.75 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -0.94 Total: -3.97 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -0.09 Total: -57.35 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.71 Total: 18.11 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.27 -8.25 -43.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569847071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.941 kcal (2) G-P(sol) polarization free energy of solvation -35.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds