Wall clock time and date at job start Tue Mar 31 2020 02:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 120.00333 * 2 1 4 4 C 1.52992 * 109.47361 * 124.99414 * 3 2 1 5 5 C 1.53001 * 109.47092 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.47310 * 180.02562 * 5 4 3 7 7 O 1.21277 * 119.99659 * 0.02562 * 6 5 4 8 8 N 1.34768 * 120.00205 * 180.02562 * 6 5 4 9 9 C 1.48149 * 127.83973 * 359.97265 * 8 6 5 10 10 C 1.54393 * 104.61751 * 140.41447 * 9 8 6 11 11 H 1.08997 * 110.42690 * 264.95396 * 10 9 8 12 12 C 1.53000 * 110.34131 * 142.74091 * 10 9 8 13 13 C 1.54283 * 104.95913 * 23.86667 * 10 9 8 14 14 H 1.09006 * 110.34073 * 118.97441 * 13 10 9 15 15 C 1.52997 * 110.34549 * 241.12858 * 13 10 9 16 16 N 1.46505 * 109.47212 * 185.00108 * 15 13 10 17 17 C 1.36936 * 119.99992 * 179.97438 * 16 15 13 18 18 H 1.08006 * 119.99834 * 0.02562 * 17 16 15 19 19 C 1.38801 * 120.00093 * 180.02562 * 17 16 15 20 20 N 1.31622 * 120.00145 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00180 * 0.02562 * 19 17 16 22 22 H 1.48492 * 109.47586 * 89.99558 * 21 19 17 23 23 H 1.48505 * 109.47293 * 210.00502 * 21 19 17 24 24 H 1.48505 * 109.46772 * 329.99807 * 21 19 17 25 25 C 1.48147 * 127.83848 * 179.97438 * 8 6 5 26 26 H 1.08000 * 120.00305 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.00401 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99784 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.47019 * 4.99385 * 3 2 1 30 30 H 1.08999 * 109.47035 * 245.00076 * 3 2 1 31 31 H 1.09007 * 109.46695 * 60.00389 * 4 3 2 32 32 H 1.08999 * 109.47586 * 300.00324 * 4 3 2 33 33 H 1.08998 * 109.46964 * 60.00593 * 5 4 3 34 34 H 1.09005 * 109.47290 * 299.99872 * 5 4 3 35 35 H 1.09000 * 110.40472 * 21.62932 * 9 8 6 36 36 H 1.08994 * 110.50897 * 259.25068 * 9 8 6 37 37 H 1.08998 * 109.46644 * 304.46063 * 12 10 9 38 38 H 1.08998 * 109.47380 * 64.46179 * 12 10 9 39 39 H 1.09000 * 109.46707 * 184.46357 * 12 10 9 40 40 H 1.09002 * 109.47153 * 65.00100 * 15 13 10 41 41 H 1.09001 * 109.46832 * 305.00291 * 15 13 10 42 42 H 0.96996 * 119.99606 * 0.02562 * 16 15 13 43 43 H 0.97010 * 119.99864 * 180.02562 * 20 19 17 44 44 H 1.09000 * 110.41275 * 100.79899 * 25 8 6 45 45 H 1.09006 * 110.40750 * 338.36450 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3331 1.1816 5 6 3.7995 2.6584 1.1819 6 6 4.7569 2.6858 2.3455 7 8 4.8216 1.7384 3.0999 8 7 5.5410 3.7630 2.5478 9 6 5.6051 5.0046 1.7421 10 6 5.7560 6.1362 2.7815 11 1 4.7825 6.5622 3.0241 12 6 6.6941 7.2229 2.2523 13 6 6.3688 5.4568 4.0238 14 1 7.3374 5.8985 4.2581 15 6 5.4238 5.5841 5.2202 16 7 6.0731 5.0398 6.4155 17 6 5.4139 5.0464 7.6157 18 1 4.4153 5.4525 7.6812 19 6 6.0292 4.5312 8.7482 20 7 5.3955 4.5370 9.9018 21 14 7.7568 3.8295 8.6352 22 1 8.7464 4.9067 8.8909 23 1 7.9219 2.7551 9.6471 24 1 7.9753 3.2686 7.2776 25 6 6.5346 3.9742 3.6262 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5401 -0.9353 0.0004 28 1 1.8499 -0.9353 0.0004 29 1 1.3586 2.1317 0.0895 30 1 2.6213 1.4025 -0.9314 31 1 3.7399 0.5065 1.0921 32 1 2.4772 1.2356 2.1130 33 1 3.0943 3.4846 1.2717 34 1 4.3574 2.7562 0.2506 35 1 4.6865 5.1341 1.1698 36 1 6.4673 4.9833 1.0756 37 1 7.6496 6.7758 1.9780 38 1 6.2479 7.6929 1.3759 39 1 6.8532 7.9739 3.0261 40 1 4.5073 5.0292 5.0200 41 1 5.1840 6.6348 5.3836 42 1 6.9701 4.6755 6.3567 43 1 5.8257 4.1773 10.6934 44 1 7.5430 3.7906 3.2553 45 1 6.3172 3.3264 4.4755 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569847071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:04 Heat of formation + Delta-G solvation = -41.916509 kcal Electronic energy + Delta-G solvation = -22067.287024 eV Core-core repulsion = 18890.946751 eV Total energy + Delta-G solvation = -3176.340273 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.21831 -39.27192 -36.85855 -36.58513 -34.18860 -33.37319 -33.20050 -30.97246 -28.65134 -27.26651 -26.76528 -24.83795 -23.10620 -22.32750 -20.95371 -20.77051 -20.09478 -19.65218 -17.99121 -17.29232 -16.65281 -16.60401 -16.46963 -15.97824 -15.60755 -15.17399 -14.88110 -14.82908 -14.37667 -14.19961 -14.02685 -13.83336 -13.50382 -13.28384 -13.04797 -12.98567 -12.83488 -12.60258 -12.58145 -12.46145 -12.16255 -11.92338 -11.85518 -11.72391 -11.63857 -11.51408 -11.39799 -11.03750 -10.86637 -10.18942 -9.72222 -9.35580 -8.08288 -5.41970 1.31916 1.37266 1.41408 1.43680 1.64377 2.01113 2.43495 3.22521 3.38232 3.53108 3.71039 3.82346 3.84793 3.98925 4.05333 4.24868 4.31434 4.35603 4.39986 4.52508 4.57380 4.63530 4.65183 4.68413 4.72754 4.77992 4.88972 4.92723 4.95504 5.02623 5.06115 5.09786 5.22015 5.24061 5.29786 5.37964 5.40153 5.58397 5.69124 5.78452 5.90880 6.15763 6.62313 7.02249 7.18115 7.78005 7.97224 9.13554 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.004042 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.025801 B = 6926.376730 C = 8118.986000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C -0.085 4.085 4 C -0.099 4.099 5 C -0.121 4.121 6 C 0.516 3.484 7 O -0.600 6.600 8 N -0.624 5.624 9 C 0.105 3.895 10 C -0.094 4.094 11 H 0.081 0.919 12 C -0.135 4.135 13 C -0.100 4.100 14 H 0.099 0.901 15 C 0.167 3.833 16 N -0.757 5.757 17 C -0.238 4.238 18 H 0.052 0.948 19 C -0.065 4.065 20 N -0.984 5.984 21 Si 0.957 3.043 22 H -0.267 1.267 23 H -0.295 1.295 24 H -0.258 1.258 25 C 0.103 3.897 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.041 0.959 33 H 0.115 0.885 34 H 0.128 0.872 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.053 0.947 40 H 0.002 0.998 41 H 0.031 0.969 42 H 0.366 0.634 43 H 0.259 0.741 44 H 0.087 0.913 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.754 1.195 -29.435 29.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.186 4.186 3 C -0.122 4.122 4 C -0.137 4.137 5 C -0.161 4.161 6 C 0.307 3.693 7 O -0.481 6.481 8 N -0.357 5.357 9 C -0.016 4.016 10 C -0.114 4.114 11 H 0.099 0.901 12 C -0.192 4.192 13 C -0.120 4.120 14 H 0.117 0.883 15 C 0.041 3.959 16 N -0.403 5.403 17 C -0.369 4.369 18 H 0.070 0.930 19 C -0.256 4.256 20 N -0.634 5.634 21 Si 0.783 3.217 22 H -0.193 1.193 23 H -0.222 1.222 24 H -0.183 1.183 25 C -0.021 4.021 26 H 0.121 0.879 27 H 0.119 0.881 28 H 0.124 0.876 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.133 0.867 34 H 0.146 0.854 35 H 0.126 0.874 36 H 0.118 0.882 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.020 0.980 41 H 0.049 0.951 42 H 0.199 0.801 43 H 0.068 0.932 44 H 0.105 0.895 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.977 0.663 -28.948 28.972 hybrid contribution 0.679 -0.823 1.333 1.708 sum -0.297 -0.160 -27.615 27.617 Atomic orbital electron populations 1.24020 0.95988 1.02526 1.01081 1.23114 0.96454 0.99059 0.99982 1.20740 0.97826 0.95487 0.98178 1.21238 0.97710 0.96302 0.98450 1.21699 0.97415 1.00754 0.96192 1.21349 0.80542 0.80345 0.87055 1.90715 1.70002 1.37345 1.50055 1.49168 1.39003 1.17809 1.29753 1.22814 1.04823 0.80541 0.93401 1.22117 1.00584 0.95981 0.92741 0.90088 1.21782 0.98842 0.97046 1.01570 1.22393 1.00174 0.94643 0.94762 0.88288 1.20795 0.94116 0.95826 0.85170 1.42730 1.17176 1.74740 1.05653 1.19023 0.98740 1.32720 0.86430 0.93002 1.25549 1.03000 1.02120 0.94921 1.69894 1.39824 1.53567 1.00146 0.85382 0.80252 0.78249 0.77769 1.19282 1.22202 1.18256 1.22365 0.92676 0.96431 0.90587 0.87868 0.88060 0.87623 0.90375 0.88928 0.92632 0.94050 0.86737 0.85448 0.87377 0.88162 0.91482 0.90101 0.92774 0.97968 0.95073 0.80103 0.93232 0.89514 0.93955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.00 14.32 67.79 0.97 -2.03 16 2 C -0.17 -2.72 9.52 25.65 0.24 -2.48 16 3 C -0.09 -1.19 5.66 29.85 0.17 -1.02 16 4 C -0.10 -2.01 4.49 30.59 0.14 -1.88 16 5 C -0.12 -2.11 4.68 29.85 0.14 -1.97 16 6 C 0.52 15.16 7.91 87.66 0.69 15.85 16 7 O -0.60 -24.94 16.25 -3.02 -0.05 -24.99 16 8 N -0.62 -16.04 3.32 -807.94 -2.68 -18.72 16 9 C 0.11 1.55 6.46 86.54 0.56 2.11 16 10 C -0.09 -1.70 3.31 -9.89 -0.03 -1.74 16 11 H 0.08 1.56 7.71 -2.39 -0.02 1.54 16 12 C -0.13 -1.68 8.92 71.98 0.64 -1.04 16 13 C -0.10 -2.77 2.75 -9.89 -0.03 -2.80 16 14 H 0.10 2.54 7.71 -2.38 -0.02 2.52 16 15 C 0.17 6.61 5.37 86.38 0.46 7.08 16 16 N -0.76 -37.59 5.01 -343.45 -1.72 -39.31 16 17 C -0.24 -14.48 10.47 84.03 0.88 -13.60 16 18 H 0.05 3.46 8.06 -2.91 -0.02 3.43 16 19 C -0.06 -4.01 5.50 84.86 0.47 -3.54 16 20 N -0.98 -65.87 13.97 21.65 0.30 -65.57 16 21 Si 0.96 47.82 27.74 68.60 1.90 49.73 16 22 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.30 -14.94 7.11 99.48 0.71 -14.24 16 24 H -0.26 -11.92 6.52 99.48 0.65 -11.27 16 25 C 0.10 3.12 6.47 86.53 0.56 3.68 16 26 H 0.10 1.37 7.84 -2.91 -0.02 1.35 16 27 H 0.10 1.36 8.06 -2.91 -0.02 1.34 16 28 H 0.11 1.70 8.06 -2.91 -0.02 1.68 16 29 H 0.08 0.94 7.79 -2.38 -0.02 0.92 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.05 1.28 8.10 -2.38 -0.02 1.26 16 32 H 0.04 1.09 8.10 -2.39 -0.02 1.07 16 33 H 0.11 1.52 7.95 -2.39 -0.02 1.50 16 34 H 0.13 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.11 0.98 7.30 -2.39 -0.02 0.97 16 36 H 0.10 1.00 7.83 -2.39 -0.02 0.98 16 37 H 0.07 0.73 8.10 -2.39 -0.02 0.71 16 38 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.00 0.10 8.13 -2.39 -0.02 0.08 16 41 H 0.03 1.22 8.14 -2.39 -0.02 1.21 16 42 H 0.37 17.24 5.47 -92.71 -0.51 16.73 16 43 H 0.26 16.42 8.31 -92.70 -0.77 15.65 16 44 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.04 1.73 7.31 -2.38 -0.02 1.72 16 Total: -1.00 -83.15 363.52 3.99 -79.16 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.37 Total: 23.09 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 5.87 Total: -3.38 kcal Atomic # 7 Polarization: -119.51 SS G_CDS: -4.10 Total: -123.60 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.05 Total: -24.99 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 1.90 Total: 49.73 kcal Total: -83.15 3.99 -79.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569847071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.245 kcal (2) G-P(sol) polarization free energy of solvation -83.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds