Wall clock time and date at job start Tue Mar 31 2020 01:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.02036 * 2 1 4 4 C 1.53880 * 110.03051 * 121.44179 * 2 1 3 5 5 C 1.54267 * 106.60091 * 119.27871 * 4 2 1 6 6 C 1.54897 * 104.19306 * 23.61286 * 5 4 2 7 7 H 1.09002 * 110.91501 * 80.44212 * 6 5 4 8 8 C 1.50699 * 110.75597 * 203.74161 * 6 5 4 9 9 O 1.21286 * 119.99884 * 113.32552 * 8 6 5 10 10 N 1.34771 * 120.00063 * 293.33099 * 8 6 5 11 11 C 1.46499 * 120.00112 * 180.02562 * 10 8 6 12 12 H 1.08991 * 112.85396 * 23.79985 * 11 10 8 13 13 C 1.53787 * 113.61693 * 154.99770 * 11 10 8 14 14 C 1.53780 * 87.08121 * 89.11544 * 13 11 10 15 15 H 1.09004 * 113.61471 * 270.79976 * 14 13 11 16 16 C 1.53001 * 113.61751 * 139.98652 * 14 13 11 17 17 N 1.46496 * 109.47205 * 176.52990 * 16 14 13 18 18 C 1.36945 * 119.99718 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99756 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99878 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 C 1.53776 * 87.17629 * 25.39073 * 14 13 11 27 27 C 1.54270 * 110.03247 * 238.60216 * 2 1 3 28 28 H 1.08993 * 109.47743 * 181.39331 * 1 2 3 29 29 H 1.09002 * 109.46758 * 301.39470 * 1 2 3 30 30 H 1.09005 * 109.46407 * 61.38987 * 1 2 3 31 31 H 1.08999 * 110.03297 * 238.56713 * 4 2 1 32 32 H 1.09001 * 110.03016 * 359.97438 * 4 2 1 33 33 H 1.09001 * 110.48934 * 264.93758 * 5 4 2 34 34 H 1.08993 * 110.48752 * 142.28694 * 5 4 2 35 35 H 0.97005 * 120.00447 * 359.97438 * 10 8 6 36 36 H 1.09005 * 113.61091 * 334.56676 * 13 11 10 37 37 H 1.08993 * 113.61560 * 203.66357 * 13 11 10 38 38 H 1.08997 * 109.46922 * 56.52031 * 16 14 13 39 39 H 1.09000 * 109.46483 * 296.52850 * 16 14 13 40 40 H 0.96996 * 120.00499 * 359.97438 * 17 16 14 41 41 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 42 42 H 1.09001 * 113.61761 * 89.15445 * 26 14 13 43 43 H 1.08997 * 113.61787 * 220.06453 * 26 14 13 44 44 H 1.09003 * 110.48459 * 98.42948 * 27 2 1 45 45 H 1.08998 * 110.48640 * 335.79320 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0571 -0.7541 1.2334 5 6 2.8873 -1.9411 0.7028 6 6 3.3136 -1.5006 -0.7197 7 1 4.1718 -0.8298 -0.6785 8 6 3.6161 -2.6991 -1.5817 9 8 2.9074 -2.9573 -2.5316 10 7 4.6740 -3.4841 -1.2972 11 6 4.9684 -4.6489 -2.1355 12 1 4.5617 -4.5592 -3.1427 13 6 6.4462 -5.0733 -2.1035 14 6 6.0832 -5.9626 -0.9025 15 1 6.1704 -5.4556 0.0584 16 6 6.7751 -7.3272 -0.9190 17 7 6.4323 -8.0633 0.3003 18 6 6.9386 -9.3187 0.5074 19 1 7.5903 -9.7662 -0.2285 20 6 6.6143 -10.0159 1.6629 21 7 5.8197 -9.4707 2.5595 22 14 7.3044 -11.7288 1.9450 23 1 6.3759 -12.7369 1.3734 24 1 8.6287 -11.8441 1.2831 25 1 7.4572 -11.9669 3.4028 26 6 4.6486 -5.9926 -1.4553 27 6 2.0584 -0.7551 -1.2371 28 1 -0.3634 -1.0272 0.0250 29 1 -0.3633 0.5354 0.8773 30 1 -0.3632 0.4921 -0.9023 31 1 2.6867 -0.0962 1.8325 32 1 1.2228 -1.1197 1.8322 33 1 2.2769 -2.8430 0.6559 34 1 3.7635 -2.1045 1.3301 35 1 5.2410 -3.2775 -0.5377 36 1 7.1286 -4.2605 -1.8545 37 1 6.7584 -5.6348 -2.9840 38 1 7.8549 -7.1865 -0.9673 39 1 6.4431 -7.8922 -1.7900 40 1 5.8468 -7.6615 0.9610 41 1 5.5928 -9.9581 3.3669 42 1 4.4684 -6.8058 -2.1584 43 1 3.8818 -5.9208 -0.6839 44 1 2.3297 -0.0529 -2.0255 45 1 1.3142 -1.4654 -1.5972 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571169095.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:09 Heat of formation + Delta-G solvation = -33.119479 kcal Electronic energy + Delta-G solvation = -21829.450215 eV Core-core repulsion = 18653.491410 eV Total energy + Delta-G solvation = -3175.958805 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.44819 -38.92443 -37.44731 -34.51778 -33.18649 -31.59998 -30.72141 -29.11261 -26.91682 -25.54031 -25.46483 -23.47184 -22.37822 -21.36995 -20.05649 -19.86636 -19.02432 -17.31410 -16.98462 -16.27159 -15.91675 -14.92367 -14.84997 -14.66594 -14.12850 -14.08652 -13.74010 -13.48876 -13.28619 -13.18621 -12.74294 -12.53104 -12.36005 -12.12399 -11.98702 -11.63454 -11.32315 -11.13892 -11.02724 -11.00246 -10.87005 -10.82371 -10.65133 -10.44990 -10.32315 -10.08627 -9.82026 -9.74999 -9.58403 -8.96365 -8.82663 -6.88799 -5.74743 -3.02847 2.59487 3.12089 3.44522 3.49479 3.51164 4.22642 4.28266 4.47813 4.59245 4.70608 4.83864 4.91022 5.01743 5.06337 5.11702 5.15198 5.17456 5.26891 5.33952 5.38261 5.54096 5.59501 5.62847 5.73875 5.78096 5.80338 5.88855 5.90050 5.96004 6.01435 6.02638 6.06528 6.13175 6.21052 6.27135 6.34895 6.44893 6.67137 6.80281 6.95971 7.50277 7.71534 8.21613 8.44617 9.55529 10.14859 10.49333 11.48270 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024155 B = 0.003014 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.887761 B = 9286.384330 C =10088.516497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.071 0.929 4 C -0.120 4.120 5 C -0.114 4.114 6 C -0.116 4.116 7 H 0.100 0.900 8 C 0.522 3.478 9 O -0.543 6.543 10 N -0.708 5.708 11 C 0.114 3.886 12 H 0.098 0.902 13 C -0.138 4.138 14 C -0.113 4.113 15 H 0.087 0.913 16 C 0.162 3.838 17 N -0.732 5.732 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.282 1.282 25 H -0.292 1.292 26 C -0.138 4.138 27 C -0.100 4.100 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.401 0.599 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.018 0.982 39 H 0.020 0.980 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.754 21.227 -5.904 22.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.090 0.910 4 C -0.157 4.157 5 C -0.152 4.152 6 C -0.137 4.137 7 H 0.118 0.882 8 C 0.309 3.691 9 O -0.419 6.419 10 N -0.359 5.359 11 C 0.009 3.991 12 H 0.116 0.884 13 C -0.177 4.177 14 C -0.132 4.132 15 H 0.105 0.895 16 C 0.035 3.965 17 N -0.376 5.376 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.208 1.208 25 H -0.218 1.218 26 C -0.177 4.177 27 C -0.138 4.138 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.235 0.765 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.036 0.964 39 H 0.038 0.962 40 H 0.217 0.783 41 H 0.064 0.936 42 H 0.108 0.892 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.171 20.884 -6.617 22.760 hybrid contribution 0.543 -0.840 0.896 1.343 sum -5.628 20.044 -5.721 21.591 Atomic orbital electron populations 1.21882 0.94879 1.02016 1.01473 1.21770 0.95956 0.99287 0.94687 0.91049 1.22224 0.99567 0.96623 0.97328 1.22344 1.00336 0.98928 0.93558 1.22324 1.00414 0.95261 0.95744 0.88183 1.20537 0.79994 0.83713 0.84883 1.90684 1.48590 1.72769 1.29903 1.45724 1.30090 1.27831 1.32229 1.21979 0.96694 0.85251 0.95163 0.88421 1.23305 0.94962 0.99440 0.99963 1.22745 0.95798 0.97257 0.97354 0.89497 1.20636 0.95995 0.89302 0.90607 1.42345 1.58599 1.16617 1.20021 1.19248 1.22974 0.92143 1.02571 0.91251 1.24738 1.00453 0.98740 0.97202 1.69663 1.40039 1.37841 1.10777 0.86191 0.78472 0.84572 0.76983 1.21745 1.20793 1.21790 1.23424 0.97572 0.96285 1.00376 1.22319 0.95984 0.98688 0.96813 0.92420 0.92773 0.92716 0.91597 0.91281 0.90875 0.90772 0.76458 0.91322 0.88788 0.96442 0.96242 0.78342 0.93575 0.89216 0.91369 0.91446 0.89991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.84 37.16 0.33 -0.73 16 2 C -0.10 -0.75 3.50 -89.50 -0.31 -1.06 16 3 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.12 -0.90 6.46 -25.61 -0.17 -1.07 16 5 C -0.11 -0.98 6.26 -25.07 -0.16 -1.14 16 6 C -0.12 -1.07 3.29 -89.78 -0.30 -1.37 16 7 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 8 C 0.52 6.53 7.13 -10.99 -0.08 6.45 16 9 O -0.54 -8.87 15.33 5.55 0.09 -8.79 16 10 N -0.71 -8.13 5.26 -52.93 -0.28 -8.40 16 11 C 0.11 1.48 4.33 -67.02 -0.29 1.19 16 12 H 0.10 1.36 7.46 -51.93 -0.39 0.97 16 13 C -0.14 -1.69 7.39 -25.92 -0.19 -1.88 16 14 C -0.11 -1.75 3.62 -89.81 -0.33 -2.08 16 15 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 16 C 0.16 3.25 6.08 -4.04 -0.02 3.22 16 17 N -0.73 -18.72 5.60 -59.91 -0.34 -19.05 16 18 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 21 N -0.93 -28.50 13.06 55.49 0.72 -27.78 16 22 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 C -0.14 -2.10 7.44 -25.83 -0.19 -2.29 16 27 C -0.10 -0.93 5.44 -25.07 -0.14 -1.07 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.52 7.67 -51.93 -0.40 0.12 16 33 H 0.07 0.75 8.04 -51.93 -0.42 0.33 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.40 3.78 8.70 -40.82 -0.36 3.42 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 1.10 8.10 -51.93 -0.42 0.68 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.02 0.40 7.87 -51.93 -0.41 -0.01 16 40 H 0.38 10.28 7.67 -40.82 -0.31 9.97 16 41 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.09 1.40 7.92 -51.93 -0.41 0.99 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.93 7.15 -51.93 -0.37 0.56 16 LS Contribution 359.83 15.07 5.42 5.42 Total: -1.00 -32.63 359.83 -9.60 -42.22 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -8.10 Total: 8.05 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -2.09 Total: -9.27 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.11 Total: -55.23 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.79 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.63 -9.60 -42.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571169095.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.102 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds