Wall clock time and date at job start Tue Mar 31 2020 01:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.02036 * 2 1 4 4 C 1.53880 * 110.03051 * 121.44179 * 2 1 3 5 5 C 1.54267 * 106.60091 * 119.27871 * 4 2 1 6 6 C 1.54897 * 104.19306 * 23.61286 * 5 4 2 7 7 H 1.09002 * 110.91501 * 80.44212 * 6 5 4 8 8 C 1.50699 * 110.75597 * 203.74161 * 6 5 4 9 9 O 1.21286 * 119.99884 * 113.32552 * 8 6 5 10 10 N 1.34771 * 120.00063 * 293.33099 * 8 6 5 11 11 C 1.46499 * 120.00112 * 180.02562 * 10 8 6 12 12 H 1.08991 * 112.85396 * 23.79985 * 11 10 8 13 13 C 1.53787 * 113.61693 * 154.99770 * 11 10 8 14 14 C 1.53780 * 87.08121 * 89.11544 * 13 11 10 15 15 H 1.09004 * 113.61471 * 270.79976 * 14 13 11 16 16 C 1.53001 * 113.61751 * 139.98652 * 14 13 11 17 17 N 1.46496 * 109.47205 * 176.52990 * 16 14 13 18 18 C 1.36945 * 119.99718 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99756 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99878 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 C 1.53776 * 87.17629 * 25.39073 * 14 13 11 27 27 C 1.54270 * 110.03247 * 238.60216 * 2 1 3 28 28 H 1.08993 * 109.47743 * 181.39331 * 1 2 3 29 29 H 1.09002 * 109.46758 * 301.39470 * 1 2 3 30 30 H 1.09005 * 109.46407 * 61.38987 * 1 2 3 31 31 H 1.08999 * 110.03297 * 238.56713 * 4 2 1 32 32 H 1.09001 * 110.03016 * 359.97438 * 4 2 1 33 33 H 1.09001 * 110.48934 * 264.93758 * 5 4 2 34 34 H 1.08993 * 110.48752 * 142.28694 * 5 4 2 35 35 H 0.97005 * 120.00447 * 359.97438 * 10 8 6 36 36 H 1.09005 * 113.61091 * 334.56676 * 13 11 10 37 37 H 1.08993 * 113.61560 * 203.66357 * 13 11 10 38 38 H 1.08997 * 109.46922 * 56.52031 * 16 14 13 39 39 H 1.09000 * 109.46483 * 296.52850 * 16 14 13 40 40 H 0.96996 * 120.00499 * 359.97438 * 17 16 14 41 41 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 42 42 H 1.09001 * 113.61761 * 89.15445 * 26 14 13 43 43 H 1.08997 * 113.61787 * 220.06453 * 26 14 13 44 44 H 1.09003 * 110.48459 * 98.42948 * 27 2 1 45 45 H 1.08998 * 110.48640 * 335.79320 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0571 -0.7541 1.2334 5 6 2.8873 -1.9411 0.7028 6 6 3.3136 -1.5006 -0.7197 7 1 4.1718 -0.8298 -0.6785 8 6 3.6161 -2.6991 -1.5817 9 8 2.9074 -2.9573 -2.5316 10 7 4.6740 -3.4841 -1.2972 11 6 4.9684 -4.6489 -2.1355 12 1 4.5617 -4.5592 -3.1427 13 6 6.4462 -5.0733 -2.1035 14 6 6.0832 -5.9626 -0.9025 15 1 6.1704 -5.4556 0.0584 16 6 6.7751 -7.3272 -0.9190 17 7 6.4323 -8.0633 0.3003 18 6 6.9386 -9.3187 0.5074 19 1 7.5903 -9.7662 -0.2285 20 6 6.6143 -10.0159 1.6629 21 7 5.8197 -9.4707 2.5595 22 14 7.3044 -11.7288 1.9450 23 1 6.3759 -12.7369 1.3734 24 1 8.6287 -11.8441 1.2831 25 1 7.4572 -11.9669 3.4028 26 6 4.6486 -5.9926 -1.4553 27 6 2.0584 -0.7551 -1.2371 28 1 -0.3634 -1.0272 0.0250 29 1 -0.3633 0.5354 0.8773 30 1 -0.3632 0.4921 -0.9023 31 1 2.6867 -0.0962 1.8325 32 1 1.2228 -1.1197 1.8322 33 1 2.2769 -2.8430 0.6559 34 1 3.7635 -2.1045 1.3301 35 1 5.2410 -3.2775 -0.5377 36 1 7.1286 -4.2605 -1.8545 37 1 6.7584 -5.6348 -2.9840 38 1 7.8549 -7.1865 -0.9673 39 1 6.4431 -7.8922 -1.7900 40 1 5.8468 -7.6615 0.9610 41 1 5.5928 -9.9581 3.3669 42 1 4.4684 -6.8058 -2.1584 43 1 3.8818 -5.9208 -0.6839 44 1 2.3297 -0.0529 -2.0255 45 1 1.3142 -1.4654 -1.5972 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571169095.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:08 Heat of formation + Delta-G solvation = -53.553994 kcal Electronic energy + Delta-G solvation = -21830.336322 eV Core-core repulsion = 18653.491410 eV Total energy + Delta-G solvation = -3176.844912 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.45947 -39.95165 -38.36055 -36.33374 -34.46444 -32.91940 -32.07579 -29.81905 -28.52515 -26.63832 -26.37108 -25.16183 -23.46180 -22.75424 -20.93085 -20.54194 -20.25107 -19.06627 -18.17513 -17.06839 -16.93750 -16.66379 -15.94172 -15.90031 -15.58763 -15.21875 -15.03068 -14.59996 -14.53599 -14.15379 -13.83477 -13.71914 -13.41523 -13.22141 -13.12032 -12.92203 -12.73219 -12.67744 -12.18301 -12.05478 -11.93146 -11.82929 -11.74330 -11.64522 -11.49734 -11.35921 -11.26287 -11.13724 -10.86934 -10.76809 -10.02133 -8.98172 -7.95325 -5.23670 1.46584 1.48491 1.56882 1.60571 2.17808 2.55821 3.37587 3.49538 3.57661 3.59191 3.60787 3.80196 3.93388 3.96036 4.18962 4.33569 4.36298 4.38893 4.48388 4.57129 4.58618 4.68960 4.75374 4.77707 4.84053 4.89833 4.91523 4.91975 4.98173 4.99552 5.13489 5.15358 5.15653 5.27795 5.30083 5.33668 5.37744 5.39122 5.49292 5.58540 5.69402 6.27574 6.56887 7.25801 7.33442 8.11290 8.33805 9.28282 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024155 B = 0.003014 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.887761 B = 9286.384330 C =10088.516497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.088 0.912 4 C -0.117 4.117 5 C -0.113 4.113 6 C -0.109 4.109 7 H 0.129 0.871 8 C 0.518 3.482 9 O -0.586 6.586 10 N -0.700 5.700 11 C 0.124 3.876 12 H 0.091 0.909 13 C -0.115 4.115 14 C -0.109 4.109 15 H 0.087 0.913 16 C 0.159 3.841 17 N -0.745 5.745 18 C -0.246 4.246 19 H 0.075 0.925 20 C -0.077 4.077 21 N -0.970 5.970 22 Si 0.973 3.027 23 H -0.288 1.288 24 H -0.269 1.269 25 H -0.294 1.294 26 C -0.143 4.143 27 C -0.102 4.102 28 H 0.043 0.957 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.088 0.912 35 H 0.414 0.586 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.022 0.978 39 H 0.019 0.981 40 H 0.373 0.627 41 H 0.251 0.749 42 H 0.081 0.919 43 H 0.049 0.951 44 H 0.071 0.929 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.384 22.633 -5.979 23.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 H 0.107 0.893 4 C -0.155 4.155 5 C -0.151 4.151 6 C -0.130 4.130 7 H 0.147 0.853 8 C 0.307 3.693 9 O -0.466 6.466 10 N -0.351 5.351 11 C 0.018 3.982 12 H 0.109 0.891 13 C -0.154 4.154 14 C -0.128 4.128 15 H 0.105 0.895 16 C 0.033 3.967 17 N -0.388 5.388 18 C -0.378 4.378 19 H 0.093 0.907 20 C -0.270 4.270 21 N -0.621 5.621 22 Si 0.802 3.198 23 H -0.216 1.216 24 H -0.193 1.193 25 H -0.221 1.221 26 C -0.182 4.182 27 C -0.140 4.140 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.250 0.750 36 H 0.112 0.888 37 H 0.123 0.877 38 H 0.040 0.960 39 H 0.037 0.963 40 H 0.205 0.795 41 H 0.060 0.940 42 H 0.100 0.900 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.764 22.309 -6.710 23.778 hybrid contribution 0.094 -1.280 0.862 1.546 sum -4.671 21.029 -5.848 22.321 Atomic orbital electron populations 1.21888 0.94953 1.01362 1.02128 1.21768 0.95928 0.99863 0.93673 0.89316 1.22232 0.99594 0.96289 0.97361 1.22348 1.00752 0.98536 0.93497 1.22379 1.01386 0.94129 0.95111 0.85274 1.21166 0.79308 0.84337 0.84524 1.90667 1.49987 1.74005 1.31975 1.45677 1.30041 1.27032 1.32316 1.21791 0.97191 0.84525 0.94686 0.89129 1.23210 0.94697 0.99071 0.98397 1.22667 0.95624 0.95541 0.98972 0.89476 1.20826 0.96575 0.91009 0.88270 1.42577 1.58316 1.16369 1.21502 1.19663 1.22390 0.93249 1.02476 0.90749 1.25577 1.01391 1.02699 0.97285 1.69818 1.41701 1.39336 1.11208 0.85139 0.78238 0.79857 0.76538 1.21553 1.19344 1.22057 1.23433 0.96969 0.97811 1.00016 1.22311 0.95479 0.98357 0.97857 0.93789 0.91595 0.92560 0.89773 0.91535 0.93276 0.89341 0.74956 0.88820 0.87732 0.95971 0.96348 0.79537 0.94030 0.90012 0.93214 0.91000 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.84 71.98 0.64 -1.37 16 2 C -0.09 -1.26 3.50 -10.07 -0.04 -1.30 16 3 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.12 -1.54 6.46 31.32 0.20 -1.33 16 5 C -0.11 -1.82 6.26 31.67 0.20 -1.62 16 6 C -0.11 -1.85 3.29 -10.25 -0.03 -1.88 16 7 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 8 C 0.52 12.65 7.13 87.66 0.63 13.28 16 9 O -0.59 -19.49 15.33 -3.05 -0.05 -19.54 16 10 N -0.70 -15.13 5.26 -439.75 -2.31 -17.44 16 11 C 0.12 3.08 4.33 45.58 0.20 3.27 16 12 H 0.09 2.46 7.46 -2.39 -0.02 2.44 16 13 C -0.12 -2.53 7.39 31.12 0.23 -2.30 16 14 C -0.11 -3.28 3.62 -10.27 -0.04 -3.32 16 15 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 16 C 0.16 6.27 6.08 86.38 0.53 6.80 16 17 N -0.75 -38.28 5.60 -343.47 -1.92 -40.21 16 18 C -0.25 -13.94 9.99 84.03 0.84 -13.10 16 19 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 20 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 21 N -0.97 -59.91 13.06 21.65 0.28 -59.63 16 22 Si 0.97 46.53 29.55 68.60 2.03 48.56 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 25 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 26 C -0.14 -4.37 7.44 31.18 0.23 -4.14 16 27 C -0.10 -1.83 5.44 31.67 0.17 -1.66 16 28 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 0.92 7.67 -2.39 -0.02 0.90 16 33 H 0.05 1.02 8.04 -2.39 -0.02 1.00 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.41 6.87 8.70 -92.70 -0.81 6.07 16 36 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 37 H 0.10 2.14 8.10 -2.39 -0.02 2.12 16 38 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.02 0.74 7.87 -2.39 -0.02 0.72 16 40 H 0.37 20.37 7.67 -92.71 -0.71 19.65 16 41 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 42 H 0.08 2.60 7.92 -2.39 -0.02 2.58 16 43 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.05 1.27 7.15 -2.39 -0.02 1.26 16 Total: -1.00 -70.90 359.83 1.69 -69.21 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: -0.55 Total: 31.76 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 4.22 Total: -12.71 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -3.95 Total: -117.28 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.05 Total: -19.54 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -70.90 1.69 -69.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571169095.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.658 kcal (2) G-P(sol) polarization free energy of solvation -70.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds