Wall clock time and date at job start Tue Mar 31 2020 02:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 C 1.50694 * 120.00046 * 179.97438 * 2 1 3 5 5 C 1.52997 * 109.47138 * 95.00086 * 4 2 1 6 6 C 1.50708 * 109.47156 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99948 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99974 * 180.02562 * 6 5 4 9 9 C 1.46928 * 120.63154 * 359.97438 * 8 6 5 10 10 C 1.53184 * 108.77874 * 233.58794 * 9 8 6 11 11 C 1.53034 * 109.31346 * 305.36702 * 10 9 8 12 12 H 1.09004 * 109.46024 * 181.37322 * 11 10 9 13 13 N 1.46501 * 109.46244 * 301.34197 * 11 10 9 14 14 C 1.36934 * 120.00465 * 275.00216 * 13 11 10 15 15 H 1.08002 * 119.99902 * 359.97438 * 14 13 11 16 16 C 1.38810 * 120.00445 * 179.97438 * 14 13 11 17 17 N 1.31616 * 120.00312 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99745 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47201 * 89.99636 * 18 16 14 20 20 H 1.48501 * 109.46935 * 209.99861 * 18 16 14 21 21 H 1.48501 * 109.47119 * 329.99977 * 18 16 14 22 22 C 1.53042 * 109.53907 * 61.36601 * 11 10 9 23 23 H 1.08997 * 109.49791 * 58.58781 * 22 11 10 24 24 C 1.53003 * 109.49718 * 178.68491 * 22 11 10 25 25 C 1.46925 * 120.63038 * 179.72378 * 8 6 5 26 26 H 1.08005 * 119.99846 * 180.02562 * 1 2 3 27 27 H 1.07995 * 120.00080 * 359.72973 * 1 2 3 28 28 H 1.08999 * 109.47368 * 89.99743 * 3 2 1 29 29 H 1.08994 * 109.47145 * 210.00597 * 3 2 1 30 30 H 1.09013 * 109.46924 * 329.99925 * 3 2 1 31 31 H 1.09001 * 109.47117 * 214.99917 * 4 2 1 32 32 H 1.08996 * 109.47244 * 335.00122 * 4 2 1 33 33 H 1.09007 * 109.47400 * 300.00057 * 5 4 2 34 34 H 1.09000 * 109.47470 * 59.99712 * 5 4 2 35 35 H 1.09004 * 109.58771 * 353.38090 * 9 8 6 36 36 H 1.09004 * 109.58127 * 113.65589 * 9 8 6 37 37 H 1.08993 * 109.49850 * 65.32231 * 10 9 8 38 38 H 1.09004 * 109.49636 * 185.41579 * 10 9 8 39 39 H 0.97004 * 119.99830 * 94.99749 * 13 11 10 40 40 H 0.96997 * 119.99970 * 180.02562 * 17 16 14 41 41 H 1.09002 * 109.47470 * 59.99981 * 24 22 11 42 42 H 1.09003 * 109.46748 * 180.02562 * 24 22 11 43 43 H 1.09003 * 109.47076 * 299.99586 * 24 22 11 44 44 H 1.09006 * 109.58302 * 246.19972 * 25 8 6 45 45 H 1.09000 * 109.58567 * 6.62296 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3050 0.0006 5 6 2.4274 -1.6845 -1.4362 6 6 3.1815 -2.9893 -1.4356 7 8 3.4054 -3.5598 -0.3890 8 7 3.6071 -3.5222 -2.5980 9 6 3.3431 -2.8432 -3.8740 10 6 2.6555 -3.8287 -4.8240 11 6 3.5110 -5.0914 -4.9493 12 1 3.0360 -5.7844 -5.6439 13 7 4.8402 -4.7328 -5.4502 14 6 5.0547 -4.6122 -6.7973 15 1 4.2441 -4.7818 -7.4905 16 6 6.3140 -4.2719 -7.2719 17 7 6.5203 -4.1564 -8.5666 18 14 7.7162 -3.9792 -6.0729 19 1 8.4288 -5.2579 -5.8228 20 1 8.6620 -2.9900 -6.6494 21 1 7.1727 -3.4571 -4.7934 22 6 3.6454 -5.7568 -3.5777 23 1 2.6552 -6.0016 -3.1934 24 6 4.4734 -7.0366 -3.7099 25 6 4.3487 -4.7905 -2.6130 26 1 -0.5400 -0.9354 0.0004 27 1 -0.5400 0.9352 0.0044 28 1 2.2452 1.6198 1.0276 29 1 3.0158 1.1748 -0.5139 30 1 1.4743 2.0648 -0.5139 31 1 2.9742 -1.1985 0.5900 32 1 1.4386 -2.0852 0.4352 33 1 1.5167 -1.7910 -2.0257 34 1 3.0523 -0.9043 -1.8709 35 1 2.6924 -1.9854 -3.7036 36 1 4.2837 -2.5072 -4.3105 37 1 1.6747 -4.0916 -4.4281 38 1 2.5408 -3.3682 -5.8053 39 1 5.5683 -4.5808 -4.8277 40 1 7.4003 -3.9190 -8.8982 41 1 5.4639 -6.7908 -4.0928 42 1 4.5684 -7.5104 -2.7328 43 1 3.9772 -7.7209 -4.3982 44 1 5.3700 -4.6126 -2.9499 45 1 4.3617 -5.2180 -1.6104 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698898185.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:24:10 Heat of formation + Delta-G solvation = -20.505037 kcal Electronic energy + Delta-G solvation = -22876.322000 eV Core-core repulsion = 19700.910198 eV Total energy + Delta-G solvation = -3175.411802 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.19315 -38.04090 -36.47920 -34.40912 -32.98145 -31.59275 -31.18075 -29.76844 -27.51728 -26.72387 -25.42994 -23.77360 -23.14515 -21.69463 -19.57186 -18.62370 -18.20482 -17.86346 -16.80590 -15.83906 -15.75199 -14.86927 -14.85333 -14.42884 -14.34006 -13.89408 -13.65890 -13.64306 -13.34427 -13.15264 -12.63271 -12.49798 -12.41770 -12.17520 -11.91614 -11.66614 -11.57344 -11.43654 -11.18456 -11.03674 -11.01630 -10.94231 -10.62246 -10.55877 -10.24291 -9.87322 -9.66273 -9.58123 -9.19863 -8.98604 -8.35116 -7.31377 -5.81936 -3.17198 2.00394 2.75727 3.19951 3.31378 3.34766 3.41323 4.46213 4.53573 4.70135 4.88402 4.93464 5.06051 5.11498 5.15350 5.23268 5.32814 5.34466 5.42479 5.44094 5.53469 5.59383 5.63150 5.69059 5.73388 5.76683 5.81416 5.87514 5.92146 6.01729 6.06983 6.20190 6.28789 6.36500 6.43488 6.46904 6.55296 6.64598 6.68409 6.73361 6.87841 7.61517 7.94606 8.31067 8.37310 9.15531 9.88194 10.08156 11.36518 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020027 B = 0.004461 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.810035 B = 6275.124921 C = 6744.052188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.121 4.121 4 C -0.070 4.070 5 C -0.133 4.133 6 C 0.512 3.488 7 O -0.555 6.555 8 N -0.605 5.605 9 C 0.111 3.889 10 C -0.150 4.150 11 C 0.184 3.816 12 H 0.060 0.940 13 N -0.744 5.744 14 C -0.241 4.241 15 H 0.091 0.909 16 C 0.007 3.993 17 N -0.933 5.933 18 Si 0.878 3.122 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.279 1.279 22 C -0.111 4.111 23 H 0.071 0.929 24 C -0.138 4.138 25 C 0.117 3.883 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.052 0.948 38 H 0.079 0.921 39 H 0.360 0.640 40 H 0.259 0.741 41 H 0.064 0.936 42 H 0.046 0.954 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.275 5.777 14.919 19.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.124 4.124 3 C -0.178 4.178 4 C -0.108 4.108 5 C -0.172 4.172 6 C 0.300 3.700 7 O -0.434 6.434 8 N -0.337 5.337 9 C -0.011 4.011 10 C -0.191 4.191 11 C 0.075 3.925 12 H 0.078 0.922 13 N -0.387 5.387 14 C -0.371 4.371 15 H 0.108 0.892 16 C -0.189 4.189 17 N -0.581 5.581 18 Si 0.709 3.291 19 H -0.210 1.210 20 H -0.217 1.217 21 H -0.205 1.205 22 C -0.131 4.131 23 H 0.089 0.911 24 C -0.196 4.196 25 C -0.006 4.006 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.194 0.806 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.157 5.479 15.191 19.077 hybrid contribution 1.104 0.347 0.502 1.262 sum -9.053 5.826 15.693 19.031 Atomic orbital electron populations 1.23701 0.95232 1.01811 1.02807 1.21807 0.95455 0.95750 0.99344 1.20883 1.00345 0.94493 1.02091 1.20413 1.00777 0.94097 0.95486 1.21640 1.01239 0.95416 0.98951 1.20654 0.79211 0.86874 0.83218 1.90654 1.58252 1.63251 1.31210 1.48189 1.55318 1.23510 1.06708 1.21759 1.01527 0.94909 0.82895 1.22495 0.98134 0.98995 0.99447 1.20184 0.87055 0.93122 0.92178 0.92193 1.42847 1.06428 1.84701 1.04772 1.19059 0.96541 1.39714 0.81782 0.89159 1.24628 0.97093 1.01803 0.95328 1.69686 1.22436 1.54817 1.11149 0.86669 0.83609 0.78005 0.80866 1.21026 1.21749 1.20534 1.21825 0.99366 0.95393 0.96548 0.91059 1.21679 1.01148 0.96192 1.00596 1.21714 0.94864 0.83398 1.00590 0.88472 0.88570 0.91476 0.91698 0.91857 0.90572 0.90643 0.88843 0.88912 0.90756 0.90257 0.92916 0.90207 0.80592 0.93058 0.91729 0.93526 0.92310 0.91633 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.71 13.89 29.01 0.40 -1.31 16 2 C -0.12 -1.15 5.31 -101.07 -0.54 -1.68 16 3 C -0.12 -0.96 10.03 36.01 0.36 -0.60 16 4 C -0.07 -0.76 4.66 -27.89 -0.13 -0.89 16 5 C -0.13 -1.48 4.03 -27.88 -0.11 -1.60 16 6 C 0.51 7.63 7.70 -10.98 -0.08 7.54 16 7 O -0.55 -9.89 15.39 5.56 0.09 -9.81 16 8 N -0.61 -9.20 2.97 -172.52 -0.51 -9.72 16 9 C 0.11 1.63 6.08 -3.71 -0.02 1.61 16 10 C -0.15 -2.32 5.78 -26.62 -0.15 -2.47 16 11 C 0.18 3.25 2.53 -67.89 -0.17 3.08 16 12 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 13 N -0.74 -16.06 3.45 -53.39 -0.18 -16.24 16 14 C -0.24 -6.34 10.41 -15.06 -0.16 -6.50 16 15 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 16 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 17 N -0.93 -28.37 13.97 55.49 0.78 -27.60 16 18 Si 0.88 21.45 27.74 -169.99 -4.71 16.73 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 22 C -0.11 -1.71 2.69 -90.29 -0.24 -1.96 16 23 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 24 C -0.14 -2.07 9.05 37.16 0.34 -1.73 16 25 C 0.12 1.87 5.44 -3.51 -0.02 1.85 16 26 H 0.10 0.81 7.99 -52.48 -0.42 0.40 16 27 H 0.10 0.72 8.04 -52.49 -0.42 0.29 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 30 H 0.06 0.45 8.06 -51.92 -0.42 0.03 16 31 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 32 H 0.07 0.87 7.94 -51.93 -0.41 0.46 16 33 H 0.09 0.94 7.69 -51.93 -0.40 0.54 16 34 H 0.09 0.94 7.94 -51.93 -0.41 0.53 16 35 H 0.07 0.88 5.93 -51.93 -0.31 0.57 16 36 H 0.08 1.35 7.75 -51.93 -0.40 0.95 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.36 7.85 3.78 -40.82 -0.15 7.70 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.06 1.09 7.54 -51.93 -0.39 0.70 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 1.13 6.64 -51.93 -0.34 0.79 16 45 H 0.09 1.40 7.00 -51.93 -0.36 1.03 16 LS Contribution 353.15 15.07 5.32 5.32 Total: -1.00 -30.56 353.15 -7.69 -38.25 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -7.84 Total: 7.61 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -0.62 Total: -4.54 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 0.08 Total: -53.56 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.71 Total: 16.73 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.56 -7.69 -38.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698898185.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.741 kcal (2) G-P(sol) polarization free energy of solvation -30.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds