Wall clock time and date at job start Tue Mar 31 2020 02:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 C 1.50694 * 120.00046 * 179.97438 * 2 1 3 5 5 C 1.52997 * 109.47138 * 95.00086 * 4 2 1 6 6 C 1.50708 * 109.47156 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99948 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99974 * 180.02562 * 6 5 4 9 9 C 1.46928 * 120.63154 * 359.97438 * 8 6 5 10 10 C 1.53184 * 108.77874 * 233.58794 * 9 8 6 11 11 C 1.53034 * 109.31346 * 305.36702 * 10 9 8 12 12 H 1.09004 * 109.46024 * 181.37322 * 11 10 9 13 13 N 1.46501 * 109.46244 * 301.34197 * 11 10 9 14 14 C 1.36934 * 120.00465 * 275.00216 * 13 11 10 15 15 H 1.08002 * 119.99902 * 359.97438 * 14 13 11 16 16 C 1.38810 * 120.00445 * 179.97438 * 14 13 11 17 17 N 1.31616 * 120.00312 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99745 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47201 * 89.99636 * 18 16 14 20 20 H 1.48501 * 109.46935 * 209.99861 * 18 16 14 21 21 H 1.48501 * 109.47119 * 329.99977 * 18 16 14 22 22 C 1.53042 * 109.53907 * 61.36601 * 11 10 9 23 23 H 1.08997 * 109.49791 * 58.58781 * 22 11 10 24 24 C 1.53003 * 109.49718 * 178.68491 * 22 11 10 25 25 C 1.46925 * 120.63038 * 179.72378 * 8 6 5 26 26 H 1.08005 * 119.99846 * 180.02562 * 1 2 3 27 27 H 1.07995 * 120.00080 * 359.72973 * 1 2 3 28 28 H 1.08999 * 109.47368 * 89.99743 * 3 2 1 29 29 H 1.08994 * 109.47145 * 210.00597 * 3 2 1 30 30 H 1.09013 * 109.46924 * 329.99925 * 3 2 1 31 31 H 1.09001 * 109.47117 * 214.99917 * 4 2 1 32 32 H 1.08996 * 109.47244 * 335.00122 * 4 2 1 33 33 H 1.09007 * 109.47400 * 300.00057 * 5 4 2 34 34 H 1.09000 * 109.47470 * 59.99712 * 5 4 2 35 35 H 1.09004 * 109.58771 * 353.38090 * 9 8 6 36 36 H 1.09004 * 109.58127 * 113.65589 * 9 8 6 37 37 H 1.08993 * 109.49850 * 65.32231 * 10 9 8 38 38 H 1.09004 * 109.49636 * 185.41579 * 10 9 8 39 39 H 0.97004 * 119.99830 * 94.99749 * 13 11 10 40 40 H 0.96997 * 119.99970 * 180.02562 * 17 16 14 41 41 H 1.09002 * 109.47470 * 59.99981 * 24 22 11 42 42 H 1.09003 * 109.46748 * 180.02562 * 24 22 11 43 43 H 1.09003 * 109.47076 * 299.99586 * 24 22 11 44 44 H 1.09006 * 109.58302 * 246.19972 * 25 8 6 45 45 H 1.09000 * 109.58567 * 6.62296 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3050 0.0006 5 6 2.4274 -1.6845 -1.4362 6 6 3.1815 -2.9893 -1.4356 7 8 3.4054 -3.5598 -0.3890 8 7 3.6071 -3.5222 -2.5980 9 6 3.3431 -2.8432 -3.8740 10 6 2.6555 -3.8287 -4.8240 11 6 3.5110 -5.0914 -4.9493 12 1 3.0360 -5.7844 -5.6439 13 7 4.8402 -4.7328 -5.4502 14 6 5.0547 -4.6122 -6.7973 15 1 4.2441 -4.7818 -7.4905 16 6 6.3140 -4.2719 -7.2719 17 7 6.5203 -4.1564 -8.5666 18 14 7.7162 -3.9792 -6.0729 19 1 8.4288 -5.2579 -5.8228 20 1 8.6620 -2.9900 -6.6494 21 1 7.1727 -3.4571 -4.7934 22 6 3.6454 -5.7568 -3.5777 23 1 2.6552 -6.0016 -3.1934 24 6 4.4734 -7.0366 -3.7099 25 6 4.3487 -4.7905 -2.6130 26 1 -0.5400 -0.9354 0.0004 27 1 -0.5400 0.9352 0.0044 28 1 2.2452 1.6198 1.0276 29 1 3.0158 1.1748 -0.5139 30 1 1.4743 2.0648 -0.5139 31 1 2.9742 -1.1985 0.5900 32 1 1.4386 -2.0852 0.4352 33 1 1.5167 -1.7910 -2.0257 34 1 3.0523 -0.9043 -1.8709 35 1 2.6924 -1.9854 -3.7036 36 1 4.2837 -2.5072 -4.3105 37 1 1.6747 -4.0916 -4.4281 38 1 2.5408 -3.3682 -5.8053 39 1 5.5683 -4.5808 -4.8277 40 1 7.4003 -3.9190 -8.8982 41 1 5.4639 -6.7908 -4.0928 42 1 4.5684 -7.5104 -2.7328 43 1 3.9772 -7.7209 -4.3982 44 1 5.3700 -4.6126 -2.9499 45 1 4.3617 -5.2180 -1.6104 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698898185.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:24:09 Heat of formation + Delta-G solvation = -37.706231 kcal Electronic energy + Delta-G solvation = -22877.067900 eV Core-core repulsion = 19700.910198 eV Total energy + Delta-G solvation = -3176.157701 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.41603 -39.33658 -37.28093 -35.94494 -34.54741 -33.19213 -32.09663 -31.45083 -28.17991 -27.84016 -26.79881 -25.10794 -24.63583 -23.03327 -20.83820 -19.87180 -19.50321 -19.33034 -17.93211 -16.97365 -16.90616 -16.55050 -16.07793 -15.58970 -15.48549 -15.22070 -15.06186 -14.69421 -14.50396 -14.39776 -14.04579 -13.71182 -13.45467 -13.30827 -13.21458 -12.95957 -12.79943 -12.65625 -12.53538 -12.45782 -12.06840 -11.98262 -11.95136 -11.91768 -11.80641 -11.67745 -11.20828 -10.98323 -10.77368 -9.89264 -9.64190 -9.23727 -7.98569 -5.29284 1.32584 1.35832 1.37818 1.44452 1.60783 2.04494 2.48709 3.33680 3.47534 3.61551 3.80003 3.96266 3.99355 4.00289 4.09524 4.17028 4.28488 4.33396 4.35037 4.47777 4.59671 4.66383 4.68665 4.73925 4.79526 4.85974 4.94125 4.97091 4.99996 5.10607 5.11782 5.15281 5.18160 5.20798 5.25857 5.28858 5.42449 5.61967 5.77349 5.84221 6.01417 6.25709 6.44278 7.12382 7.14395 7.89353 8.07537 9.23412 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020027 B = 0.004461 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.810035 B = 6275.124921 C = 6744.052188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.134 4.134 3 C -0.121 4.121 4 C -0.065 4.065 5 C -0.126 4.126 6 C 0.510 3.490 7 O -0.587 6.587 8 N -0.606 5.606 9 C 0.116 3.884 10 C -0.143 4.143 11 C 0.176 3.824 12 H 0.049 0.951 13 N -0.742 5.742 14 C -0.213 4.213 15 H 0.062 0.938 16 C -0.058 4.058 17 N -0.984 5.984 18 Si 0.939 3.061 19 H -0.283 1.283 20 H -0.300 1.300 21 H -0.258 1.258 22 C -0.100 4.100 23 H 0.090 0.910 24 C -0.137 4.137 25 C 0.117 3.883 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.362 0.638 40 H 0.255 0.745 41 H 0.041 0.959 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.050 0.950 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.643 6.662 16.894 21.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.134 4.134 3 C -0.178 4.178 4 C -0.103 4.103 5 C -0.165 4.165 6 C 0.300 3.700 7 O -0.468 6.468 8 N -0.338 5.338 9 C -0.006 4.006 10 C -0.184 4.184 11 C 0.068 3.932 12 H 0.067 0.933 13 N -0.386 5.386 14 C -0.344 4.344 15 H 0.080 0.920 16 C -0.249 4.249 17 N -0.636 5.636 18 Si 0.768 3.232 19 H -0.210 1.210 20 H -0.227 1.227 21 H -0.183 1.183 22 C -0.120 4.120 23 H 0.108 0.892 24 C -0.194 4.194 25 C -0.006 4.006 26 H 0.116 0.884 27 H 0.128 0.872 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.196 0.804 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.571 6.362 17.215 21.696 hybrid contribution 1.397 0.010 -0.085 1.400 sum -10.174 6.371 17.131 20.918 Atomic orbital electron populations 1.23860 0.95077 1.02548 1.01555 1.21792 0.95689 0.95439 1.00466 1.20901 1.00296 0.94075 1.02530 1.20328 1.00217 0.94759 0.95020 1.21680 1.01685 0.93514 0.99669 1.21293 0.78686 0.87616 0.82372 1.90643 1.59492 1.64370 1.32261 1.48248 1.55185 1.23260 1.07103 1.21740 1.00951 0.95676 0.82282 1.22368 0.98997 0.97693 0.99298 1.20429 0.85309 0.94295 0.93189 0.93252 1.42811 1.08302 1.84636 1.02896 1.19012 0.95296 1.36643 0.83439 0.91973 1.25278 0.99741 1.03244 0.96682 1.69850 1.22778 1.57611 1.13313 0.85654 0.80402 0.77564 0.79542 1.20970 1.22657 1.18329 1.21734 1.00368 0.95127 0.94758 0.89184 1.21662 0.99763 0.96213 1.01809 1.21627 0.94327 0.84118 1.00486 0.88412 0.87222 0.91096 0.91835 0.90821 0.91851 0.91726 0.86891 0.87405 0.87214 0.92698 0.90179 0.91582 0.80433 0.93606 0.93935 0.91349 0.92108 0.93184 0.89545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.79 13.89 67.78 0.94 -1.85 16 2 C -0.13 -2.14 5.31 -16.49 -0.09 -2.23 16 3 C -0.12 -1.62 10.03 71.24 0.71 -0.91 16 4 C -0.07 -1.28 4.66 29.85 0.14 -1.15 16 5 C -0.13 -2.44 4.03 29.85 0.12 -2.32 16 6 C 0.51 13.99 7.70 87.66 0.67 14.67 16 7 O -0.59 -20.04 15.39 -3.03 -0.05 -20.09 16 8 N -0.61 -16.98 2.97 -818.12 -2.43 -19.40 16 9 C 0.12 3.09 6.08 86.36 0.52 3.61 16 10 C -0.14 -4.11 5.78 30.67 0.18 -3.93 16 11 C 0.18 5.97 2.53 45.02 0.11 6.08 16 12 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 13 N -0.74 -31.62 3.45 -322.81 -1.11 -32.74 16 14 C -0.21 -11.31 10.41 84.03 0.87 -10.44 16 15 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 16 C -0.06 -3.30 5.50 84.86 0.47 -2.83 16 17 N -0.98 -61.47 13.97 21.65 0.30 -61.17 16 18 Si 0.94 44.72 27.74 68.60 1.90 46.62 16 19 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 20 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 21 H -0.26 -11.22 6.52 99.48 0.65 -10.57 16 22 C -0.10 -2.87 2.69 -10.58 -0.03 -2.90 16 23 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 24 C -0.14 -3.86 9.05 71.98 0.65 -3.21 16 25 C 0.12 3.54 5.44 86.50 0.47 4.01 16 26 H 0.10 1.38 7.99 -2.91 -0.02 1.36 16 27 H 0.11 1.29 8.04 -2.91 -0.02 1.26 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.86 8.12 -2.39 -0.02 0.84 16 30 H 0.07 0.83 8.06 -2.38 -0.02 0.81 16 31 H 0.06 1.39 8.10 -2.39 -0.02 1.37 16 32 H 0.06 1.39 7.94 -2.39 -0.02 1.38 16 33 H 0.11 1.79 7.69 -2.38 -0.02 1.77 16 34 H 0.11 1.81 7.94 -2.39 -0.02 1.79 16 35 H 0.11 2.16 5.93 -2.39 -0.01 2.14 16 36 H 0.05 1.77 7.75 -2.39 -0.02 1.75 16 37 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 39 H 0.36 15.38 3.78 -92.71 -0.35 15.03 16 40 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 41 H 0.04 1.38 7.54 -2.39 -0.02 1.37 16 42 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.05 1.66 6.64 -2.38 -0.02 1.65 16 45 H 0.09 2.64 7.00 -2.39 -0.02 2.62 16 Total: -1.00 -66.74 353.15 4.91 -61.83 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: 0.54 Total: 28.33 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 5.75 Total: -3.39 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -3.24 Total: -113.31 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.05 Total: -20.09 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.90 Total: 46.62 kcal Total: -66.74 4.91 -61.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698898185.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.129 kcal (2) G-P(sol) polarization free energy of solvation -66.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds