Wall clock time and date at job start Tue Mar 31 2020 02:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.63698 * 2 1 4 4 C 1.54327 * 110.87100 * 236.75402 * 2 1 3 5 5 N 1.47024 * 107.26774 * 219.37132 * 4 2 1 6 6 C 1.34780 * 125.64847 * 179.20685 * 5 4 2 7 7 O 1.21621 * 119.99664 * 359.70987 * 6 5 4 8 8 C 1.47095 * 120.00095 * 179.71513 * 6 5 4 9 9 C 1.33004 * 119.99837 * 179.97438 * 8 6 5 10 10 C 1.50696 * 119.99812 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47372 * 0.02562 * 10 9 8 12 12 C 1.53002 * 109.47283 * 119.99969 * 10 9 8 13 13 C 1.52994 * 109.46967 * 240.00089 * 10 9 8 14 14 C 1.47426 * 108.70449 * 358.94057 * 5 4 2 15 15 C 1.54912 * 104.83261 * 24.12870 * 14 5 4 16 16 H 1.08989 * 111.00345 * 204.91519 * 15 14 5 17 17 N 1.46498 * 111.00339 * 81.06171 * 15 14 5 18 18 C 1.36945 * 119.99492 * 86.45398 * 17 15 14 19 19 H 1.07996 * 120.00061 * 0.02562 * 18 17 15 20 20 C 1.38819 * 119.99543 * 179.97438 * 18 17 15 21 21 N 1.31616 * 120.00296 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99597 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46986 * 89.99958 * 22 20 18 24 24 H 1.48497 * 109.46928 * 209.99809 * 22 20 18 25 25 H 1.48497 * 109.47025 * 329.99811 * 22 20 18 26 26 H 1.08997 * 109.46866 * 296.85774 * 1 2 3 27 27 H 1.08995 * 109.47083 * 56.85906 * 1 2 3 28 28 H 1.09007 * 109.46846 * 176.85643 * 1 2 3 29 29 H 1.08995 * 109.88184 * 99.95555 * 4 2 1 30 30 H 1.09002 * 109.88385 * 338.78562 * 4 2 1 31 31 H 1.08001 * 120.00073 * 359.97438 * 8 6 5 32 32 H 1.07991 * 120.00045 * 359.97438 * 9 8 6 33 33 H 1.09001 * 109.47615 * 59.99549 * 11 10 9 34 34 H 1.08998 * 109.47313 * 180.02562 * 11 10 9 35 35 H 1.09007 * 109.47106 * 300.00185 * 11 10 9 36 36 H 1.09002 * 109.46507 * 59.99733 * 12 10 9 37 37 H 1.08998 * 109.47092 * 179.97438 * 12 10 9 38 38 H 1.08999 * 109.46696 * 300.00190 * 12 10 9 39 39 H 1.09002 * 109.47470 * 60.00346 * 13 10 9 40 40 H 1.09007 * 109.47332 * 180.02562 * 13 10 9 41 41 H 1.09003 * 109.47456 * 300.00013 * 13 10 9 42 42 H 1.09002 * 110.36518 * 142.96440 * 14 5 4 43 43 H 1.08995 * 110.36673 * 265.17549 * 14 5 4 44 44 H 0.96994 * 120.00529 * 266.45647 * 17 15 14 45 45 H 0.96994 * 120.00046 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0798 -0.7906 -1.2060 5 7 3.2494 -1.5470 -0.7354 6 6 4.0031 -2.3751 -1.4855 7 8 3.7312 -2.5501 -2.6580 8 6 5.1543 -3.0673 -0.8862 9 6 5.8977 -3.8849 -1.6264 10 6 7.0768 -4.5945 -1.0122 11 6 7.1961 -4.2035 0.4621 12 6 6.8762 -6.1073 -1.1234 13 6 8.3549 -4.1939 -1.7517 14 6 3.4652 -1.2446 0.6913 15 6 2.0789 -0.7934 1.2151 16 1 2.1820 -0.1490 2.0881 17 7 1.2295 -1.9486 1.5151 18 6 1.3002 -2.5499 2.7434 19 1 1.9819 -2.1722 3.4911 20 6 0.4949 -3.6442 3.0278 21 7 -0.3363 -4.1042 2.1168 22 14 0.5908 -4.4640 4.7036 23 1 -0.3817 -3.8228 5.6247 24 1 0.2670 -5.9069 4.5680 25 1 1.9634 -4.3139 5.2502 26 1 -0.3633 0.4643 0.9168 27 1 -0.3633 0.5618 -0.8605 28 1 -0.3633 -1.0262 -0.0564 29 1 2.3775 -0.1015 -1.9963 30 1 1.3190 -1.4773 -1.5771 31 1 5.3959 -2.9116 0.1549 32 1 5.6559 -4.0409 -2.6673 33 1 6.2855 -4.4891 0.9887 34 1 8.0492 -4.7164 0.9062 35 1 7.3388 -3.1257 0.5417 36 1 6.7909 -6.3862 -2.1737 37 1 7.7292 -6.6205 -0.6796 38 1 5.9656 -6.3926 -0.5966 39 1 8.4979 -3.1162 -1.6724 40 1 9.2077 -4.7075 -1.3078 41 1 8.2697 -4.4728 -2.8020 42 1 3.7992 -2.1364 1.2217 43 1 4.1944 -0.4423 0.8030 44 1 0.6170 -2.2876 0.8437 45 1 -0.8987 -4.8691 2.3154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700259720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:41 Heat of formation + Delta-G solvation = -19.210169 kcal Electronic energy + Delta-G solvation = -22736.531473 eV Core-core repulsion = 19561.175821 eV Total energy + Delta-G solvation = -3175.355652 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.74100 -38.11184 -37.15079 -33.83005 -32.44508 -31.27416 -30.43851 -27.72769 -27.41043 -27.33640 -26.38261 -23.91901 -23.17562 -21.62423 -19.24852 -19.08553 -17.90302 -17.52272 -16.75426 -15.82931 -15.23361 -14.82745 -14.62034 -14.29088 -14.05182 -14.00256 -13.63461 -13.02188 -12.92070 -12.64559 -12.45024 -12.21866 -12.19922 -12.06127 -11.77737 -11.75725 -11.51773 -11.13244 -11.10019 -10.99916 -10.93682 -10.76162 -10.69979 -10.44718 -10.27951 -9.92282 -9.66230 -9.49559 -9.24279 -9.02243 -8.12900 -7.02474 -5.82858 -3.12616 1.64093 3.39032 3.44169 3.46442 3.46966 3.71658 4.52501 4.56155 4.71586 4.89788 4.91394 5.18450 5.20268 5.33334 5.38245 5.43968 5.49903 5.55661 5.56583 5.64283 5.67926 5.76866 5.79345 5.80944 5.94269 5.94650 6.00727 6.05327 6.16928 6.21123 6.21747 6.22512 6.35178 6.39236 6.47199 6.52731 6.63080 6.70569 6.86750 6.93555 7.63540 8.01666 8.34940 8.61881 9.46738 10.02735 10.37373 11.39294 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012760 B = 0.005579 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.885224 B = 5017.640583 C = 6542.342621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.113 4.113 3 H 0.079 0.921 4 C 0.117 3.883 5 N -0.597 5.597 6 C 0.559 3.441 7 O -0.563 6.563 8 C -0.202 4.202 9 C -0.068 4.068 10 C -0.046 4.046 11 C -0.149 4.149 12 C -0.139 4.139 13 C -0.136 4.136 14 C 0.069 3.931 15 C 0.171 3.829 16 H 0.070 0.930 17 N -0.709 5.709 18 C -0.246 4.246 19 H 0.072 0.928 20 C -0.008 4.008 21 N -0.928 5.928 22 Si 0.906 3.094 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.282 1.282 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.131 0.869 32 H 0.123 0.877 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.080 0.920 43 H 0.055 0.945 44 H 0.387 0.613 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.493 4.082 -4.815 14.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.133 4.133 3 H 0.097 0.903 4 C -0.006 4.006 5 N -0.329 5.329 6 C 0.350 3.650 7 O -0.445 6.445 8 C -0.222 4.222 9 C -0.088 4.088 10 C -0.046 4.046 11 C -0.206 4.206 12 C -0.196 4.196 13 C -0.194 4.194 14 C -0.057 4.057 15 C 0.059 3.941 16 H 0.088 0.912 17 N -0.350 5.350 18 C -0.377 4.377 19 H 0.090 0.910 20 C -0.204 4.204 21 N -0.576 5.576 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.149 0.851 32 H 0.141 0.859 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.098 0.902 43 H 0.073 0.927 44 H 0.223 0.777 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.381 3.871 -5.276 14.896 hybrid contribution -0.204 -0.659 0.789 1.048 sum 13.177 3.212 -4.487 14.286 Atomic orbital electron populations 1.21600 0.93491 1.02970 1.00884 1.22491 0.97074 0.98504 0.95245 0.90267 1.21928 0.87890 0.94354 0.96407 1.48196 1.29019 1.43888 1.11748 1.18231 0.82829 0.78591 0.85370 1.90728 1.72328 1.64763 1.16664 1.22807 0.96871 1.01257 1.01308 1.23593 0.93042 0.92316 0.99810 1.19736 0.93511 0.95643 0.95707 1.22013 1.02356 1.01586 0.94631 1.21833 1.02175 0.93453 1.02155 1.21819 0.95855 1.01536 1.00166 1.23412 1.01092 1.00634 0.80580 1.21358 0.88629 0.89914 0.94231 0.91180 1.42383 1.45342 1.32265 1.15040 1.19213 1.18564 1.09136 0.90803 0.91037 1.24743 0.98996 0.98841 0.97869 1.69658 1.27318 1.27197 1.33386 0.86219 0.77550 0.78758 0.83792 1.21664 1.21816 1.20734 0.92120 0.93690 0.91269 0.92439 0.91506 0.85101 0.85920 0.91677 0.92369 0.92192 0.92377 0.92227 0.92049 0.92444 0.92240 0.92383 0.90164 0.92729 0.77715 0.93394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 8.73 37.16 0.32 -1.78 16 2 C -0.11 -1.78 3.41 -88.78 -0.30 -2.09 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 4 C 0.12 2.02 6.46 -3.06 -0.02 2.00 16 5 N -0.60 -10.90 3.33 -171.91 -0.57 -11.48 16 6 C 0.56 10.72 7.80 -12.67 -0.10 10.62 16 7 O -0.56 -12.37 16.55 5.26 0.09 -12.28 16 8 C -0.20 -3.19 8.43 -37.81 -0.32 -3.51 16 9 C -0.07 -0.94 8.33 -36.13 -0.30 -1.24 16 10 C -0.05 -0.50 0.99 -155.67 -0.15 -0.66 16 11 C -0.15 -1.58 7.13 37.16 0.26 -1.31 16 12 C -0.14 -1.44 8.45 37.16 0.31 -1.12 16 13 C -0.14 -1.25 8.46 37.15 0.31 -0.93 16 14 C 0.07 1.17 6.21 -2.53 -0.02 1.16 16 15 C 0.17 3.14 3.44 -65.78 -0.23 2.92 16 16 H 0.07 1.24 8.13 -51.94 -0.42 0.82 16 17 N -0.71 -16.68 4.74 -51.35 -0.24 -16.92 16 18 C -0.25 -6.44 9.98 -15.05 -0.15 -6.59 16 19 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 20 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 21 N -0.93 -27.42 13.06 55.49 0.72 -26.69 16 22 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 1.31 6.37 -51.93 -0.33 0.98 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.28 7.78 -51.93 -0.40 0.87 16 31 H 0.13 1.90 4.56 -52.49 -0.24 1.66 16 32 H 0.12 1.82 7.49 -52.49 -0.39 1.42 16 33 H 0.06 0.77 7.50 -51.93 -0.39 0.39 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.61 7.50 -51.93 -0.39 0.22 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 1.48 7.16 -51.93 -0.37 1.10 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.39 9.96 6.09 -40.82 -0.25 9.71 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 358.29 15.07 5.40 5.40 Total: -1.00 -30.95 358.29 -7.90 -38.85 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -7.81 Total: 9.27 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -0.47 Total: -2.84 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.09 Total: -55.09 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.09 Total: -12.28 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.95 -7.90 -38.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700259720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.637 kcal (2) G-P(sol) polarization free energy of solvation -30.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds