Wall clock time and date at job start Tue Mar 31 2020 02:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.63698 * 2 1 4 4 C 1.54327 * 110.87100 * 236.75402 * 2 1 3 5 5 N 1.47024 * 107.26774 * 219.37132 * 4 2 1 6 6 C 1.34780 * 125.64847 * 179.20685 * 5 4 2 7 7 O 1.21621 * 119.99664 * 359.70987 * 6 5 4 8 8 C 1.47095 * 120.00095 * 179.71513 * 6 5 4 9 9 C 1.33004 * 119.99837 * 179.97438 * 8 6 5 10 10 C 1.50696 * 119.99812 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47372 * 0.02562 * 10 9 8 12 12 C 1.53002 * 109.47283 * 119.99969 * 10 9 8 13 13 C 1.52994 * 109.46967 * 240.00089 * 10 9 8 14 14 C 1.47426 * 108.70449 * 358.94057 * 5 4 2 15 15 C 1.54912 * 104.83261 * 24.12870 * 14 5 4 16 16 H 1.08989 * 111.00345 * 204.91519 * 15 14 5 17 17 N 1.46498 * 111.00339 * 81.06171 * 15 14 5 18 18 C 1.36945 * 119.99492 * 86.45398 * 17 15 14 19 19 H 1.07996 * 120.00061 * 0.02562 * 18 17 15 20 20 C 1.38819 * 119.99543 * 179.97438 * 18 17 15 21 21 N 1.31616 * 120.00296 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99597 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46986 * 89.99958 * 22 20 18 24 24 H 1.48497 * 109.46928 * 209.99809 * 22 20 18 25 25 H 1.48497 * 109.47025 * 329.99811 * 22 20 18 26 26 H 1.08997 * 109.46866 * 296.85774 * 1 2 3 27 27 H 1.08995 * 109.47083 * 56.85906 * 1 2 3 28 28 H 1.09007 * 109.46846 * 176.85643 * 1 2 3 29 29 H 1.08995 * 109.88184 * 99.95555 * 4 2 1 30 30 H 1.09002 * 109.88385 * 338.78562 * 4 2 1 31 31 H 1.08001 * 120.00073 * 359.97438 * 8 6 5 32 32 H 1.07991 * 120.00045 * 359.97438 * 9 8 6 33 33 H 1.09001 * 109.47615 * 59.99549 * 11 10 9 34 34 H 1.08998 * 109.47313 * 180.02562 * 11 10 9 35 35 H 1.09007 * 109.47106 * 300.00185 * 11 10 9 36 36 H 1.09002 * 109.46507 * 59.99733 * 12 10 9 37 37 H 1.08998 * 109.47092 * 179.97438 * 12 10 9 38 38 H 1.08999 * 109.46696 * 300.00190 * 12 10 9 39 39 H 1.09002 * 109.47470 * 60.00346 * 13 10 9 40 40 H 1.09007 * 109.47332 * 180.02562 * 13 10 9 41 41 H 1.09003 * 109.47456 * 300.00013 * 13 10 9 42 42 H 1.09002 * 110.36518 * 142.96440 * 14 5 4 43 43 H 1.08995 * 110.36673 * 265.17549 * 14 5 4 44 44 H 0.96994 * 120.00529 * 266.45647 * 17 15 14 45 45 H 0.96994 * 120.00046 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0798 -0.7906 -1.2060 5 7 3.2494 -1.5470 -0.7354 6 6 4.0031 -2.3751 -1.4855 7 8 3.7312 -2.5501 -2.6580 8 6 5.1543 -3.0673 -0.8862 9 6 5.8977 -3.8849 -1.6264 10 6 7.0768 -4.5945 -1.0122 11 6 7.1961 -4.2035 0.4621 12 6 6.8762 -6.1073 -1.1234 13 6 8.3549 -4.1939 -1.7517 14 6 3.4652 -1.2446 0.6913 15 6 2.0789 -0.7934 1.2151 16 1 2.1820 -0.1490 2.0881 17 7 1.2295 -1.9486 1.5151 18 6 1.3002 -2.5499 2.7434 19 1 1.9819 -2.1722 3.4911 20 6 0.4949 -3.6442 3.0278 21 7 -0.3363 -4.1042 2.1168 22 14 0.5908 -4.4640 4.7036 23 1 -0.3817 -3.8228 5.6247 24 1 0.2670 -5.9069 4.5680 25 1 1.9634 -4.3139 5.2502 26 1 -0.3633 0.4643 0.9168 27 1 -0.3633 0.5618 -0.8605 28 1 -0.3633 -1.0262 -0.0564 29 1 2.3775 -0.1015 -1.9963 30 1 1.3190 -1.4773 -1.5771 31 1 5.3959 -2.9116 0.1549 32 1 5.6559 -4.0409 -2.6673 33 1 6.2855 -4.4891 0.9887 34 1 8.0492 -4.7164 0.9062 35 1 7.3388 -3.1257 0.5417 36 1 6.7909 -6.3862 -2.1737 37 1 7.7292 -6.6205 -0.6796 38 1 5.9656 -6.3926 -0.5966 39 1 8.4979 -3.1162 -1.6724 40 1 9.2077 -4.7075 -1.3078 41 1 8.2697 -4.4728 -2.8020 42 1 3.7992 -2.1364 1.2217 43 1 4.1944 -0.4423 0.8030 44 1 0.6170 -2.2876 0.8437 45 1 -0.8987 -4.8691 2.3154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700259720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:40 Heat of formation + Delta-G solvation = -37.434357 kcal Electronic energy + Delta-G solvation = -22737.321733 eV Core-core repulsion = 19561.175821 eV Total energy + Delta-G solvation = -3176.145912 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.17124 -39.33305 -38.39933 -35.64631 -33.97106 -32.57804 -32.08106 -29.34116 -28.24328 -28.10626 -27.72715 -25.81034 -24.48323 -22.99348 -20.67488 -20.33885 -19.34864 -19.07265 -18.14968 -17.33150 -16.68388 -16.38102 -15.87990 -15.66511 -15.43335 -15.05706 -14.87980 -14.62351 -14.44119 -14.03695 -13.59878 -13.49311 -13.19366 -13.13914 -13.01040 -12.90063 -12.84623 -12.79423 -12.56551 -12.28488 -12.12449 -11.97848 -11.95997 -11.94598 -11.62698 -11.48763 -11.34661 -11.05929 -10.87225 -10.44324 -9.62222 -8.94242 -7.91290 -5.19324 0.38622 1.49218 1.49948 1.58022 2.08675 2.32127 2.58026 3.39126 3.42943 3.67589 3.82910 3.88771 3.94890 4.06432 4.09561 4.11472 4.24450 4.42041 4.42775 4.63123 4.65160 4.73951 4.77072 4.78060 4.84837 4.88932 4.94764 4.99426 5.00046 5.00996 5.11654 5.17137 5.19783 5.24192 5.28156 5.35653 5.41958 5.53225 5.55198 5.55893 5.59728 6.29738 6.57912 7.15278 7.36924 8.12727 8.34883 9.32412 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012760 B = 0.005579 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.885224 B = 5017.640583 C = 6542.342621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.097 4.097 3 H 0.120 0.880 4 C 0.114 3.886 5 N -0.602 5.602 6 C 0.546 3.454 7 O -0.604 6.604 8 C -0.224 4.224 9 C -0.048 4.048 10 C -0.045 4.045 11 C -0.148 4.148 12 C -0.139 4.139 13 C -0.133 4.133 14 C 0.078 3.922 15 C 0.158 3.842 16 H 0.088 0.912 17 N -0.722 5.722 18 C -0.232 4.232 19 H 0.085 0.915 20 C -0.075 4.075 21 N -0.972 5.972 22 Si 0.967 3.033 23 H -0.288 1.288 24 H -0.305 1.305 25 H -0.265 1.265 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.030 0.970 29 H 0.074 0.926 30 H 0.036 0.964 31 H 0.145 0.855 32 H 0.110 0.890 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.042 0.958 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.095 0.905 44 H 0.372 0.628 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.050 5.417 -3.876 17.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.117 4.117 3 H 0.138 0.862 4 C -0.009 4.009 5 N -0.332 5.332 6 C 0.339 3.661 7 O -0.488 6.488 8 C -0.244 4.244 9 C -0.068 4.068 10 C -0.045 4.045 11 C -0.205 4.205 12 C -0.196 4.196 13 C -0.190 4.190 14 C -0.048 4.048 15 C 0.048 3.952 16 H 0.105 0.895 17 N -0.362 5.362 18 C -0.364 4.364 19 H 0.103 0.897 20 C -0.267 4.267 21 N -0.623 5.623 22 Si 0.797 3.203 23 H -0.216 1.216 24 H -0.232 1.232 25 H -0.190 1.190 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.049 0.951 29 H 0.092 0.908 30 H 0.055 0.945 31 H 0.162 0.838 32 H 0.128 0.872 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.113 0.887 44 H 0.205 0.795 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 15.985 5.267 -4.305 17.373 hybrid contribution -0.945 -1.019 0.421 1.453 sum 15.040 4.248 -3.883 16.104 Atomic orbital electron populations 1.21529 0.93871 1.00936 1.02074 1.22489 0.96645 0.99760 0.92788 0.86174 1.21999 0.87102 0.94102 0.97676 1.48346 1.28939 1.43677 1.12249 1.18857 0.83612 0.78493 0.85114 1.90692 1.73655 1.66153 1.18333 1.22770 0.96753 1.02844 1.02082 1.23880 0.93140 0.90654 0.99090 1.19837 0.92982 0.95589 0.96128 1.22008 1.02317 1.02139 0.94034 1.21849 1.02278 0.93090 1.02404 1.21805 0.95192 1.01824 1.00197 1.23353 1.00805 1.01150 0.79448 1.21693 0.88660 0.88760 0.96063 0.89454 1.42574 1.46055 1.33619 1.13943 1.19667 1.16941 1.08116 0.91701 0.89706 1.25501 0.99752 1.00365 1.01100 1.69834 1.29087 1.27942 1.35436 0.85223 0.78114 0.76836 0.80105 1.21571 1.23206 1.18976 0.92098 0.91063 0.95077 0.90793 0.94515 0.83773 0.87192 0.93450 0.90372 0.91757 0.92033 0.90008 0.93854 0.92406 0.90201 0.92144 0.91777 0.88717 0.79460 0.94399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.93 8.73 71.98 0.63 -3.30 16 2 C -0.10 -2.86 3.41 -9.60 -0.03 -2.89 16 3 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 4 C 0.11 3.87 6.46 86.73 0.56 4.43 16 5 N -0.60 -21.66 3.33 -816.04 -2.71 -24.38 16 6 C 0.55 21.21 7.80 86.57 0.67 21.88 16 7 O -0.60 -27.28 16.55 -4.10 -0.07 -27.35 16 8 C -0.22 -7.03 8.43 23.43 0.20 -6.84 16 9 C -0.05 -1.30 8.33 24.52 0.20 -1.10 16 10 C -0.05 -0.91 0.99 -52.93 -0.05 -0.96 16 11 C -0.15 -2.82 7.13 71.98 0.51 -2.31 16 12 C -0.14 -2.65 8.45 71.98 0.61 -2.04 16 13 C -0.13 -2.07 8.46 71.98 0.61 -1.46 16 14 C 0.08 2.48 6.21 86.86 0.54 3.02 16 15 C 0.16 5.53 3.44 46.38 0.16 5.69 16 16 H 0.09 2.80 8.13 -2.39 -0.02 2.78 16 17 N -0.72 -34.05 4.74 -316.38 -1.50 -35.55 16 18 C -0.23 -12.08 9.98 84.03 0.84 -11.25 16 19 H 0.09 4.10 7.83 -2.91 -0.02 4.08 16 20 C -0.08 -4.20 5.50 84.86 0.47 -3.73 16 21 N -0.97 -59.38 13.06 21.65 0.28 -59.09 16 22 Si 0.97 45.07 29.55 68.60 2.03 47.10 16 23 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 24 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 25 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 26 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.03 1.20 6.37 -2.38 -0.02 1.18 16 29 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.04 1.45 7.78 -2.39 -0.02 1.44 16 31 H 0.14 4.06 4.56 -2.91 -0.01 4.05 16 32 H 0.11 3.30 7.49 -2.92 -0.02 3.28 16 33 H 0.05 1.07 7.50 -2.39 -0.02 1.05 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.17 7.50 -2.38 -0.02 1.15 16 36 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.06 2.28 7.16 -2.39 -0.02 2.26 16 43 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.37 19.78 6.09 -92.71 -0.56 19.22 16 45 H 0.25 14.85 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -69.24 358.29 4.33 -64.91 By element: Atomic # 1 Polarization: 34.83 SS G_CDS: 0.39 Total: 35.22 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 5.92 Total: -0.85 kcal Atomic # 7 Polarization: -115.09 SS G_CDS: -3.93 Total: -119.02 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.07 Total: -27.35 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -69.24 4.33 -64.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700259720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.474 kcal (2) G-P(sol) polarization free energy of solvation -69.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds