Wall clock time and date at job start Tue Mar 31 2020 02:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47327 * 2 1 4 4 C 1.50696 * 109.47366 * 120.00280 * 2 1 3 5 5 O 1.21285 * 120.00351 * 96.61437 * 4 2 1 6 6 N 1.34776 * 120.00108 * 276.62100 * 4 2 1 7 7 C 1.46925 * 120.63152 * 5.75885 * 6 4 2 8 8 C 1.53187 * 108.78035 * 233.59297 * 7 6 4 9 9 C 1.53038 * 109.31108 * 305.36619 * 8 7 6 10 10 C 1.53039 * 109.54038 * 61.36541 * 9 8 7 11 11 C 1.46925 * 120.63308 * 185.74919 * 6 4 2 12 12 H 1.09009 * 109.70040 * 246.26563 * 11 6 4 13 13 C 1.52996 * 109.58481 * 6.61568 * 11 6 4 14 14 N 1.46505 * 109.47638 * 287.14474 * 13 11 6 15 15 C 1.36934 * 120.00595 * 185.63605 * 14 13 11 16 16 H 1.08000 * 119.99540 * 0.02562 * 15 14 13 17 17 C 1.38806 * 120.00021 * 180.02562 * 15 14 13 18 18 N 1.31620 * 120.00511 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99639 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47531 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47016 * 120.00478 * 19 17 15 22 22 H 1.48498 * 109.47126 * 239.99999 * 19 17 15 23 23 C 1.53001 * 109.46648 * 240.00245 * 2 1 3 24 24 C 1.52998 * 117.49717 * 128.74860 * 23 2 1 25 25 C 1.52993 * 117.50109 * 60.08781 * 23 2 1 26 26 H 1.09005 * 109.46810 * 304.37705 * 1 2 3 27 27 H 1.08999 * 109.47228 * 64.37228 * 1 2 3 28 28 H 1.08998 * 109.47397 * 184.37880 * 1 2 3 29 29 H 1.09003 * 109.58269 * 353.38258 * 7 6 4 30 30 H 1.08999 * 109.58977 * 113.80225 * 7 6 4 31 31 H 1.09002 * 109.49879 * 65.31829 * 8 7 6 32 32 H 1.08999 * 109.50359 * 185.37650 * 8 7 6 33 33 H 1.08999 * 109.45913 * 301.33997 * 9 8 7 34 34 H 1.09007 * 109.46103 * 181.38419 * 9 8 7 35 35 H 1.09003 * 109.49758 * 178.68503 * 10 9 8 36 36 H 1.08998 * 109.49798 * 58.58461 * 10 9 8 37 37 H 1.09000 * 109.47659 * 47.14991 * 13 11 6 38 38 H 1.09003 * 109.46992 * 167.15075 * 13 11 6 39 39 H 0.97005 * 119.99314 * 5.64352 * 14 13 11 40 40 H 0.96997 * 120.00219 * 180.02562 * 18 17 15 41 41 H 1.09000 * 115.55039 * 274.41296 * 23 2 1 42 42 H 1.09003 * 117.50284 * 359.97438 * 24 23 2 43 43 H 1.09000 * 117.49782 * 145.01911 * 24 23 2 44 44 H 1.08997 * 117.50109 * 214.97941 * 25 23 2 45 45 H 1.09006 * 117.50216 * 359.97265 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.3486 -1.8797 1.1689 6 7 2.1302 -0.0465 2.3992 7 6 1.6342 1.3310 2.5214 8 6 2.7598 2.2137 3.0697 9 6 3.2807 1.6148 4.3782 10 6 3.8479 0.2186 4.1120 11 6 2.7346 -0.6866 3.5755 12 1 1.9769 -0.8298 4.3459 13 6 3.3227 -2.0415 3.1765 14 7 2.2360 -2.9955 2.9412 15 6 2.5222 -4.3097 2.6839 16 1 3.5491 -4.6430 2.6549 17 6 1.4925 -5.2133 2.4604 18 7 0.2411 -4.8070 2.4952 19 14 1.8830 -7.0062 2.1101 20 1 3.3546 -7.2048 2.1267 21 1 1.2568 -7.8615 3.1502 22 1 1.3479 -7.3778 0.7757 23 6 2.0399 -0.7212 -1.2493 24 6 3.0762 0.0040 -2.1101 25 6 1.6373 -0.1483 -2.6096 26 1 -0.3633 0.5803 0.8482 27 1 -0.3633 0.4445 -0.9265 28 1 -0.3634 -1.0246 0.0785 29 1 1.3271 1.6971 1.5417 30 1 0.7855 1.3546 3.2050 31 1 3.5710 2.2619 2.3433 32 1 2.3776 3.2175 3.2552 33 1 2.4634 1.5441 5.0959 34 1 4.0651 2.2542 4.7833 35 1 4.2399 -0.1979 5.0400 36 1 4.6488 0.2855 3.3758 37 1 3.9106 -1.9285 2.2657 38 1 3.9624 -2.4102 3.9784 39 1 1.3137 -2.6961 2.9675 40 1 -0.4784 -5.4386 2.3394 41 1 2.1252 -1.8046 -1.1648 42 1 3.3944 0.9951 -1.7867 43 1 3.8430 -0.6023 -2.5923 44 1 1.4580 -0.8546 -3.4201 45 1 1.0087 0.7423 -2.6146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713261266.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:01 Heat of formation + Delta-G solvation = 30.656486 kcal Electronic energy + Delta-G solvation = -23886.460141 eV Core-core repulsion = 20713.266870 eV Total energy + Delta-G solvation = -3173.193272 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.20845 -37.77611 -36.41866 -34.44133 -32.79095 -32.01071 -31.00079 -29.71773 -26.13699 -24.75624 -24.16040 -22.71309 -22.15537 -21.85394 -20.54639 -19.72898 -18.41672 -17.11382 -16.37025 -15.65616 -15.10345 -14.81347 -14.48727 -14.36335 -14.10799 -13.67186 -13.51574 -13.19809 -13.08890 -12.85875 -12.44118 -12.21896 -12.04821 -11.72039 -11.66230 -11.49326 -11.28092 -10.98984 -10.86673 -10.69600 -10.66370 -10.62993 -10.49674 -10.23105 -10.11968 -9.78135 -9.77158 -9.43398 -8.60350 -8.24075 -7.91683 -6.41011 -5.47404 -2.66308 3.45571 3.46481 3.59267 3.63483 3.65736 4.00857 4.73356 4.80219 4.83104 4.87376 4.94129 5.04437 5.09996 5.23445 5.30509 5.37447 5.47149 5.54714 5.64982 5.68681 5.71541 5.73037 5.85315 5.86376 5.88912 5.95086 5.97110 6.02062 6.07660 6.12244 6.13952 6.22383 6.26175 6.40777 6.46330 6.61803 6.66427 6.77289 7.01049 7.35551 7.93753 8.08089 8.70842 9.10093 9.82516 10.44617 10.79385 11.76878 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013118 B = 0.007143 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.912576 B = 3918.895512 C = 5351.697013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.075 4.075 3 H 0.078 0.922 4 C 0.479 3.521 5 O -0.438 6.438 6 N -0.616 5.616 7 C 0.109 3.891 8 C -0.134 4.134 9 C -0.117 4.117 10 C -0.127 4.127 11 C 0.142 3.858 12 H 0.067 0.933 13 C 0.164 3.836 14 N -0.694 5.694 15 C -0.203 4.203 16 H 0.063 0.937 17 C -0.023 4.023 18 N -0.938 5.938 19 Si 0.898 3.102 20 H -0.284 1.284 21 H -0.296 1.296 22 H -0.296 1.296 23 C -0.129 4.129 24 C -0.182 4.182 25 C -0.181 4.181 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.032 0.968 38 H 0.015 0.985 39 H 0.380 0.620 40 H 0.247 0.753 41 H 0.122 0.878 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.404 18.654 -2.769 19.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.096 4.096 3 H 0.096 0.904 4 C 0.264 3.736 5 O -0.305 6.305 6 N -0.354 5.354 7 C -0.014 4.014 8 C -0.173 4.173 9 C -0.155 4.155 10 C -0.166 4.166 11 C 0.038 3.962 12 H 0.085 0.915 13 C 0.036 3.964 14 N -0.337 5.337 15 C -0.335 4.335 16 H 0.081 0.919 17 C -0.217 4.217 18 N -0.590 5.590 19 Si 0.732 3.268 20 H -0.209 1.209 21 H -0.224 1.224 22 H -0.224 1.224 23 C -0.147 4.147 24 C -0.219 4.219 25 C -0.218 4.218 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.050 0.950 38 H 0.032 0.968 39 H 0.214 0.786 40 H 0.057 0.943 41 H 0.140 0.860 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.698 17.793 -2.858 18.396 hybrid contribution -0.215 -0.728 -0.261 0.803 sum 3.483 17.065 -3.120 17.694 Atomic orbital electron populations 1.21717 0.92999 1.03556 1.01365 1.20816 0.97190 0.98715 0.92928 0.90375 1.20429 0.81430 0.87766 0.83969 1.91236 1.43462 1.13053 1.82729 1.47922 1.62683 1.13894 1.10919 1.21638 0.95960 0.82348 1.01486 1.21924 0.98966 0.98485 0.97911 1.21489 1.00459 0.96431 0.97093 1.21906 0.98321 0.95028 1.01315 1.21439 0.94253 0.93371 0.87100 0.91538 1.20795 0.92341 0.86501 0.96767 1.42191 1.03397 1.04613 1.83464 1.19195 0.92104 0.84902 1.37344 0.91875 1.24571 0.95336 0.97469 1.04362 1.69667 0.97623 1.33091 1.58585 0.86200 0.76958 0.86357 0.77325 1.20938 1.22422 1.22374 1.22185 1.02167 1.00803 0.89582 1.22985 0.92506 1.01632 1.04812 1.22922 0.97849 1.03069 0.97912 0.92581 0.92233 0.91186 0.90090 0.92039 0.91747 0.91382 0.91912 0.92158 0.91005 0.91711 0.95019 0.96777 0.78609 0.94261 0.85998 0.89326 0.89055 0.88981 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.88 37.16 0.33 -1.59 16 2 C -0.07 -1.10 2.01 -91.77 -0.18 -1.28 16 3 H 0.08 0.96 6.38 -51.93 -0.33 0.63 16 4 C 0.48 8.92 6.42 -10.99 -0.07 8.85 16 5 O -0.44 -10.50 9.46 5.55 0.05 -10.44 16 6 N -0.62 -9.88 2.97 -165.23 -0.49 -10.37 16 7 C 0.11 1.28 5.78 -3.71 -0.02 1.26 16 8 C -0.13 -1.32 6.08 -26.61 -0.16 -1.48 16 9 C -0.12 -1.23 5.88 -26.69 -0.16 -1.38 16 10 C -0.13 -1.68 5.34 -26.61 -0.14 -1.82 16 11 C 0.14 2.44 2.91 -67.60 -0.20 2.24 16 12 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 13 C 0.16 3.61 4.89 -4.04 -0.02 3.59 16 14 N -0.69 -18.86 3.18 -59.91 -0.19 -19.05 16 15 C -0.20 -6.13 9.74 -15.06 -0.15 -6.27 16 16 H 0.06 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.02 -0.71 5.50 -17.43 -0.10 -0.81 16 18 N -0.94 -30.15 13.06 55.49 0.72 -29.42 16 19 Si 0.90 24.09 29.55 -169.99 -5.02 19.07 16 20 H -0.28 -7.40 7.11 56.52 0.40 -7.00 16 21 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 22 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 23 C -0.13 -1.97 4.95 -90.62 -0.45 -2.42 16 24 C -0.18 -2.30 10.18 -26.70 -0.27 -2.57 16 25 C -0.18 -2.19 9.68 -26.70 -0.26 -2.45 16 26 H 0.06 0.70 7.08 -51.93 -0.37 0.33 16 27 H 0.06 0.69 7.15 -51.93 -0.37 0.32 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.08 0.83 4.95 -51.93 -0.26 0.57 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.03 0.76 6.41 -51.93 -0.33 0.43 16 38 H 0.01 0.32 8.09 -51.93 -0.42 -0.10 16 39 H 0.38 11.03 7.17 -40.82 -0.29 10.74 16 40 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 41 H 0.12 2.34 7.32 -51.93 -0.38 1.96 16 42 H 0.09 1.00 8.05 -51.93 -0.42 0.58 16 43 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.09 0.96 7.59 -51.93 -0.39 0.56 16 LS Contribution 343.69 15.07 5.18 5.18 Total: -1.00 -34.23 343.69 -9.36 -43.59 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -7.76 Total: 7.59 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -1.85 Total: -6.15 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: 0.04 Total: -58.84 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.05 Total: -10.44 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -5.02 Total: 19.07 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.23 -9.36 -43.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713261266.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.247 kcal (2) G-P(sol) polarization free energy of solvation -34.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds