Wall clock time and date at job start Tue Mar 31 2020 02:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47327 * 2 1 4 4 C 1.50696 * 109.47366 * 120.00280 * 2 1 3 5 5 O 1.21285 * 120.00351 * 96.61437 * 4 2 1 6 6 N 1.34776 * 120.00108 * 276.62100 * 4 2 1 7 7 C 1.46925 * 120.63152 * 5.75885 * 6 4 2 8 8 C 1.53187 * 108.78035 * 233.59297 * 7 6 4 9 9 C 1.53038 * 109.31108 * 305.36619 * 8 7 6 10 10 C 1.53039 * 109.54038 * 61.36541 * 9 8 7 11 11 C 1.46925 * 120.63308 * 185.74919 * 6 4 2 12 12 H 1.09009 * 109.70040 * 246.26563 * 11 6 4 13 13 C 1.52996 * 109.58481 * 6.61568 * 11 6 4 14 14 N 1.46505 * 109.47638 * 287.14474 * 13 11 6 15 15 C 1.36934 * 120.00595 * 185.63605 * 14 13 11 16 16 H 1.08000 * 119.99540 * 0.02562 * 15 14 13 17 17 C 1.38806 * 120.00021 * 180.02562 * 15 14 13 18 18 N 1.31620 * 120.00511 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99639 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47531 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47016 * 120.00478 * 19 17 15 22 22 H 1.48498 * 109.47126 * 239.99999 * 19 17 15 23 23 C 1.53001 * 109.46648 * 240.00245 * 2 1 3 24 24 C 1.52998 * 117.49717 * 128.74860 * 23 2 1 25 25 C 1.52993 * 117.50109 * 60.08781 * 23 2 1 26 26 H 1.09005 * 109.46810 * 304.37705 * 1 2 3 27 27 H 1.08999 * 109.47228 * 64.37228 * 1 2 3 28 28 H 1.08998 * 109.47397 * 184.37880 * 1 2 3 29 29 H 1.09003 * 109.58269 * 353.38258 * 7 6 4 30 30 H 1.08999 * 109.58977 * 113.80225 * 7 6 4 31 31 H 1.09002 * 109.49879 * 65.31829 * 8 7 6 32 32 H 1.08999 * 109.50359 * 185.37650 * 8 7 6 33 33 H 1.08999 * 109.45913 * 301.33997 * 9 8 7 34 34 H 1.09007 * 109.46103 * 181.38419 * 9 8 7 35 35 H 1.09003 * 109.49758 * 178.68503 * 10 9 8 36 36 H 1.08998 * 109.49798 * 58.58461 * 10 9 8 37 37 H 1.09000 * 109.47659 * 47.14991 * 13 11 6 38 38 H 1.09003 * 109.46992 * 167.15075 * 13 11 6 39 39 H 0.97005 * 119.99314 * 5.64352 * 14 13 11 40 40 H 0.96997 * 120.00219 * 180.02562 * 18 17 15 41 41 H 1.09000 * 115.55039 * 274.41296 * 23 2 1 42 42 H 1.09003 * 117.50284 * 359.97438 * 24 23 2 43 43 H 1.09000 * 117.49782 * 145.01911 * 24 23 2 44 44 H 1.08997 * 117.50109 * 214.97941 * 25 23 2 45 45 H 1.09006 * 117.50216 * 359.97265 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.3486 -1.8797 1.1689 6 7 2.1302 -0.0465 2.3992 7 6 1.6342 1.3310 2.5214 8 6 2.7598 2.2137 3.0697 9 6 3.2807 1.6148 4.3782 10 6 3.8479 0.2186 4.1120 11 6 2.7346 -0.6866 3.5755 12 1 1.9769 -0.8298 4.3459 13 6 3.3227 -2.0415 3.1765 14 7 2.2360 -2.9955 2.9412 15 6 2.5222 -4.3097 2.6839 16 1 3.5491 -4.6430 2.6549 17 6 1.4925 -5.2133 2.4604 18 7 0.2411 -4.8070 2.4952 19 14 1.8830 -7.0062 2.1101 20 1 3.3546 -7.2048 2.1267 21 1 1.2568 -7.8615 3.1502 22 1 1.3479 -7.3778 0.7757 23 6 2.0399 -0.7212 -1.2493 24 6 3.0762 0.0040 -2.1101 25 6 1.6373 -0.1483 -2.6096 26 1 -0.3633 0.5803 0.8482 27 1 -0.3633 0.4445 -0.9265 28 1 -0.3634 -1.0246 0.0785 29 1 1.3271 1.6971 1.5417 30 1 0.7855 1.3546 3.2050 31 1 3.5710 2.2619 2.3433 32 1 2.3776 3.2175 3.2552 33 1 2.4634 1.5441 5.0959 34 1 4.0651 2.2542 4.7833 35 1 4.2399 -0.1979 5.0400 36 1 4.6488 0.2855 3.3758 37 1 3.9106 -1.9285 2.2657 38 1 3.9624 -2.4102 3.9784 39 1 1.3137 -2.6961 2.9675 40 1 -0.4784 -5.4386 2.3394 41 1 2.1252 -1.8046 -1.1648 42 1 3.3944 0.9951 -1.7867 43 1 3.8430 -0.6023 -2.5923 44 1 1.4580 -0.8546 -3.4201 45 1 1.0087 0.7423 -2.6146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713261266.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:00 Heat of formation + Delta-G solvation = 9.116560 kcal Electronic energy + Delta-G solvation = -23887.394182 eV Core-core repulsion = 20713.266870 eV Total energy + Delta-G solvation = -3174.127313 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.55256 -38.91294 -37.70288 -36.31256 -34.20959 -33.56773 -32.27738 -31.43986 -27.70784 -26.17342 -25.45510 -24.31474 -23.37611 -23.08274 -21.77957 -20.88780 -19.75339 -19.10055 -17.81777 -16.95023 -16.69765 -16.28298 -15.95662 -15.44155 -15.32686 -15.19144 -15.02954 -14.64268 -14.50378 -14.13512 -13.79029 -13.63611 -13.47500 -13.09333 -12.92544 -12.86196 -12.77717 -12.65554 -12.26866 -12.11718 -12.06089 -11.86053 -11.79463 -11.69294 -11.44466 -11.31372 -11.20650 -10.89363 -10.80667 -9.77277 -9.32197 -8.60868 -7.83790 -5.01432 1.40463 1.43220 1.52370 2.07097 2.20516 2.60412 2.94598 3.48246 3.62316 3.74208 3.86133 3.90569 4.02590 4.05461 4.16309 4.19677 4.30460 4.37649 4.44674 4.50728 4.55488 4.58508 4.67444 4.76400 4.78351 4.86894 4.91353 4.94728 5.02504 5.04896 5.08243 5.16294 5.19079 5.25879 5.27402 5.30382 5.32900 5.43861 5.49697 5.54703 5.91837 6.37165 6.76797 7.43322 7.70903 8.25503 8.48514 9.41312 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013118 B = 0.007143 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.912576 B = 3918.895512 C = 5351.697013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.062 4.062 3 H 0.116 0.884 4 C 0.472 3.528 5 O -0.508 6.508 6 N -0.614 5.614 7 C 0.100 3.900 8 C -0.127 4.127 9 C -0.113 4.113 10 C -0.118 4.118 11 C 0.146 3.854 12 H 0.054 0.946 13 C 0.167 3.833 14 N -0.699 5.699 15 C -0.208 4.208 16 H 0.059 0.941 17 C -0.087 4.087 18 N -0.973 5.973 19 Si 0.965 3.035 20 H -0.272 1.272 21 H -0.291 1.291 22 H -0.300 1.300 23 C -0.164 4.164 24 C -0.171 4.171 25 C -0.157 4.157 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.022 0.978 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.012 0.988 38 H 0.012 0.988 39 H 0.367 0.633 40 H 0.243 0.757 41 H 0.066 0.934 42 H 0.113 0.887 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.830 22.162 -3.046 22.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.083 4.083 3 H 0.134 0.866 4 C 0.259 3.741 5 O -0.380 6.380 6 N -0.351 5.351 7 C -0.022 4.022 8 C -0.165 4.165 9 C -0.151 4.151 10 C -0.157 4.157 11 C 0.042 3.958 12 H 0.072 0.928 13 C 0.040 3.960 14 N -0.339 5.339 15 C -0.341 4.341 16 H 0.077 0.923 17 C -0.277 4.277 18 N -0.626 5.626 19 Si 0.796 3.204 20 H -0.197 1.197 21 H -0.218 1.218 22 H -0.228 1.228 23 C -0.183 4.183 24 C -0.208 4.208 25 C -0.194 4.194 26 H 0.091 0.909 27 H 0.109 0.891 28 H 0.042 0.958 29 H 0.120 0.880 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.120 0.880 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.030 0.970 38 H 0.030 0.970 39 H 0.199 0.801 40 H 0.052 0.948 41 H 0.085 0.915 42 H 0.131 0.869 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.159 21.370 -3.107 21.991 hybrid contribution -0.300 -1.757 -0.191 1.792 sum 3.858 19.613 -3.298 20.259 Atomic orbital electron populations 1.21692 0.92345 1.01177 1.03760 1.20778 0.97480 0.99703 0.90369 0.86590 1.21273 0.79920 0.87387 0.85564 1.91198 1.46694 1.16095 1.84058 1.48081 1.61728 1.15575 1.09675 1.22019 0.97082 0.79892 1.03177 1.21910 0.98085 0.99381 0.97166 1.21496 1.01234 0.94484 0.97855 1.21847 0.96569 0.96190 1.01098 1.21283 0.95245 0.91958 0.87309 0.92794 1.20827 0.91176 0.88503 0.95482 1.42260 1.03814 1.04519 1.83313 1.19516 0.91899 0.86539 1.36151 0.92303 1.25347 0.95284 1.01726 1.05371 1.69834 0.98355 1.34184 1.60260 0.85152 0.77268 0.81278 0.76696 1.19682 1.21812 1.22750 1.21976 1.06201 0.98270 0.91876 1.23086 0.92562 1.02020 1.03087 1.23033 0.97817 1.03359 0.95199 0.90888 0.89118 0.95828 0.88016 0.91376 0.91675 0.88021 0.91605 0.89743 0.90467 0.92062 0.96987 0.97024 0.80148 0.94796 0.91542 0.86883 0.89574 0.88996 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.52 8.88 71.98 0.64 -2.88 16 2 C -0.06 -1.76 2.01 -11.54 -0.02 -1.79 16 3 H 0.12 2.40 6.38 -2.39 -0.02 2.38 16 4 C 0.47 18.02 6.42 87.66 0.56 18.59 16 5 O -0.51 -26.10 9.46 -3.05 -0.03 -26.13 16 6 N -0.61 -19.38 2.97 -795.04 -2.36 -21.75 16 7 C 0.10 2.02 5.78 86.36 0.50 2.52 16 8 C -0.13 -1.92 6.08 30.67 0.19 -1.74 16 9 C -0.11 -1.96 5.88 30.62 0.18 -1.78 16 10 C -0.12 -2.95 5.34 30.67 0.16 -2.79 16 11 C 0.15 5.08 2.91 44.97 0.13 5.21 16 12 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 13 C 0.17 7.74 4.89 86.38 0.42 8.16 16 14 N -0.70 -40.17 3.18 -343.45 -1.09 -41.26 16 15 C -0.21 -13.14 9.74 84.03 0.82 -12.33 16 16 H 0.06 3.67 7.83 -2.91 -0.02 3.65 16 17 C -0.09 -5.53 5.50 84.86 0.47 -5.07 16 18 N -0.97 -65.31 13.06 21.65 0.28 -65.02 16 19 Si 0.97 51.45 29.55 68.60 2.03 53.47 16 20 H -0.27 -13.78 7.11 99.48 0.71 -13.08 16 21 H -0.29 -15.12 7.11 99.48 0.71 -14.41 16 22 H -0.30 -16.03 7.11 99.48 0.71 -15.32 16 23 C -0.16 -5.09 4.95 -10.80 -0.05 -5.15 16 24 C -0.17 -4.01 10.18 30.62 0.31 -3.70 16 25 C -0.16 -3.49 9.68 30.62 0.30 -3.19 16 26 H 0.07 1.66 7.08 -2.38 -0.02 1.64 16 27 H 0.09 1.83 7.15 -2.39 -0.02 1.81 16 28 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.10 1.64 4.95 -2.39 -0.01 1.62 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.01 0.63 6.41 -2.39 -0.02 0.61 16 38 H 0.01 0.55 8.09 -2.39 -0.02 0.53 16 39 H 0.37 22.62 7.17 -92.70 -0.66 21.95 16 40 H 0.24 15.80 8.31 -92.71 -0.77 15.03 16 41 H 0.07 2.81 7.32 -2.39 -0.02 2.79 16 42 H 0.11 2.11 8.05 -2.39 -0.02 2.09 16 43 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.12 1.99 7.59 -2.38 -0.02 1.97 16 Total: -1.00 -81.30 343.69 3.73 -77.58 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: 0.30 Total: 29.04 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 4.60 Total: -5.93 kcal Atomic # 7 Polarization: -124.86 SS G_CDS: -3.17 Total: -128.03 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.03 Total: -26.13 kcal Atomic # 14 Polarization: 51.45 SS G_CDS: 2.03 Total: 53.47 kcal Total: -81.30 3.73 -77.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713261266.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.692 kcal (2) G-P(sol) polarization free energy of solvation -81.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds