Wall clock time and date at job start Tue Mar 31 2020 02:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 110.63989 * 2 1 4 4 C 1.54327 * 110.71949 * 123.14236 * 2 1 3 5 5 N 1.47021 * 107.26949 * 140.55935 * 4 2 1 6 6 C 1.34778 * 125.64785 * 181.02466 * 5 4 2 7 7 O 1.21278 * 119.99842 * 180.02562 * 6 5 4 8 8 C 1.50703 * 119.99651 * 0.02562 * 6 5 4 9 9 C 1.53003 * 109.46728 * 180.02562 * 8 6 5 10 10 C 1.53786 * 113.61503 * 85.86370 * 9 8 6 11 11 C 1.54049 * 86.98426 * 140.01654 * 10 9 8 12 12 C 1.53781 * 113.61337 * 183.47164 * 9 8 6 13 13 C 1.47423 * 108.70471 * 1.28394 * 5 4 2 14 14 C 1.55130 * 104.72543 * 335.55633 * 13 5 4 15 15 H 1.08998 * 111.19291 * 279.19312 * 14 13 5 16 16 C 1.52992 * 110.90901 * 155.26989 * 14 13 5 17 17 N 1.46502 * 109.46868 * 72.98124 * 16 14 13 18 18 C 1.36938 * 120.00137 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99883 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00225 * 179.97438 * 18 17 16 21 21 N 1.31612 * 119.99967 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99730 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47208 * 90.00165 * 22 20 18 24 24 H 1.48497 * 109.46952 * 209.99815 * 22 20 18 25 25 H 1.48497 * 109.47404 * 330.00037 * 22 20 18 26 26 H 1.08994 * 109.46944 * 298.31046 * 1 2 3 27 27 H 1.09000 * 109.47098 * 58.31128 * 1 2 3 28 28 H 1.09000 * 109.46440 * 178.31013 * 1 2 3 29 29 H 1.08999 * 109.88140 * 21.13797 * 4 2 1 30 30 H 1.09005 * 109.88091 * 259.97339 * 4 2 1 31 31 H 1.09000 * 109.47223 * 60.00290 * 8 6 5 32 32 H 1.08997 * 109.47305 * 299.99950 * 8 6 5 33 33 H 1.09002 * 112.85017 * 314.66753 * 9 8 6 34 34 H 1.08992 * 113.61675 * 254.61398 * 10 9 8 35 35 H 1.09000 * 113.60973 * 25.51686 * 10 9 8 36 36 H 1.09005 * 113.62125 * 220.02158 * 11 10 9 37 37 H 1.08996 * 113.68970 * 89.12734 * 11 10 9 38 38 H 1.08999 * 113.61567 * 334.48261 * 12 9 8 39 39 H 1.08998 * 113.61196 * 105.38615 * 12 9 8 40 40 H 1.08998 * 110.36612 * 94.48156 * 13 5 4 41 41 H 1.08994 * 110.36805 * 216.80903 * 13 5 4 42 42 H 1.09005 * 109.47420 * 192.97334 * 16 14 13 43 43 H 1.08998 * 109.47538 * 312.97915 * 16 14 13 44 44 H 0.96998 * 119.99972 * 359.97438 * 17 16 14 45 45 H 0.97005 * 119.99733 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0761 -0.7892 1.2086 5 7 3.2446 -1.5494 0.7416 6 6 3.9924 -2.3810 1.4938 7 8 4.9384 -2.9584 1.0014 8 6 3.6529 -2.5934 2.9466 9 6 4.6502 -3.5752 3.5651 10 6 5.9366 -2.9059 4.0771 11 6 5.8560 -3.8603 5.2837 12 6 4.3408 -3.9268 5.0298 13 6 3.4667 -1.2467 -0.6840 14 6 2.0791 -0.7975 -1.2125 15 1 1.4453 -1.6559 -1.4347 16 6 2.2279 0.1039 -2.4397 17 7 2.6329 -0.7040 -3.5927 18 6 2.8281 -0.1094 -4.8107 19 1 2.6839 0.9552 -4.9213 20 6 3.2124 -0.8748 -5.9032 21 7 3.4005 -0.3033 -7.0737 22 14 3.4625 -2.7161 -5.7118 23 1 2.1835 -3.4202 -5.9829 24 1 4.4953 -3.1779 -6.6738 25 1 3.9076 -3.0140 -4.3268 26 1 -0.3633 0.4873 0.9047 27 1 -0.3633 0.5398 -0.8745 28 1 -0.3632 -1.0273 -0.0303 29 1 1.3130 -1.4731 1.5801 30 1 2.3741 -0.0990 1.9979 31 1 2.6446 -2.9992 3.0286 32 1 3.7055 -1.6415 3.4750 33 1 4.8319 -4.4465 2.9359 34 1 6.8028 -3.0792 3.4387 35 1 5.8073 -1.8564 4.3413 36 1 6.1199 -3.3899 6.2310 37 1 6.3672 -4.8099 5.1258 38 1 3.7760 -3.1558 5.5540 39 1 3.9195 -4.9236 5.1600 40 1 4.1947 -0.4427 -0.7921 41 1 3.8032 -2.1381 -1.2132 42 1 1.2749 0.5884 -2.6524 43 1 2.9855 0.8627 -2.2436 44 1 2.7628 -1.6601 -3.4934 45 1 3.6687 -0.8382 -7.8371 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716980417.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:27 Heat of formation + Delta-G solvation = -15.809765 kcal Electronic energy + Delta-G solvation = -22223.662159 eV Core-core repulsion = 19048.453960 eV Total energy + Delta-G solvation = -3175.208199 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.34949 -38.99754 -37.60208 -34.84514 -32.96296 -31.57567 -30.90342 -29.28562 -26.47604 -25.87000 -25.76079 -23.67671 -22.55801 -21.08349 -20.17300 -19.64308 -19.21672 -17.63097 -16.90462 -16.28748 -16.05115 -15.12482 -14.85979 -14.62634 -14.39121 -14.05578 -13.84537 -13.55188 -13.23842 -12.82765 -12.68835 -12.64671 -12.45330 -12.34778 -12.15293 -11.95290 -11.66924 -11.50704 -11.42120 -10.94751 -10.87304 -10.66830 -10.58069 -10.49907 -10.40710 -10.33851 -10.11247 -9.72395 -9.57773 -8.89291 -8.61097 -7.23333 -5.76163 -3.11948 2.66392 2.98091 3.40191 3.44550 3.48199 4.21944 4.39557 4.42810 4.47045 4.54707 4.61036 4.62698 4.74697 4.88559 5.10782 5.17845 5.20307 5.34759 5.37455 5.39308 5.40777 5.46204 5.51170 5.54966 5.63913 5.64812 5.66550 5.69986 5.78330 5.88044 5.90702 6.01625 6.03912 6.11544 6.14097 6.22096 6.29899 6.36736 6.60672 6.71220 7.55091 7.99109 8.19952 8.42728 9.21448 9.94062 10.13193 11.42180 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020408 B = 0.003794 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.665896 B = 7377.639702 C = 8372.825820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 H 0.089 0.911 4 C 0.106 3.894 5 N -0.622 5.622 6 C 0.524 3.476 7 O -0.539 6.539 8 C -0.126 4.126 9 C -0.095 4.095 10 C -0.134 4.134 11 C -0.143 4.143 12 C -0.138 4.138 13 C 0.112 3.888 14 C -0.106 4.106 15 H 0.085 0.915 16 C 0.170 3.830 17 N -0.756 5.756 18 C -0.245 4.245 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.934 5.934 22 Si 0.882 3.118 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.276 1.276 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.033 0.967 43 H 0.029 0.971 44 H 0.361 0.639 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.398 -3.093 26.799 27.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 H 0.107 0.893 4 C -0.018 4.018 5 N -0.356 5.356 6 C 0.313 3.687 7 O -0.415 6.415 8 C -0.166 4.166 9 C -0.114 4.114 10 C -0.172 4.172 11 C -0.180 4.180 12 C -0.175 4.175 13 C -0.010 4.010 14 C -0.125 4.125 15 H 0.103 0.897 16 C 0.042 3.958 17 N -0.402 5.402 18 C -0.375 4.375 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.582 5.582 22 Si 0.713 3.287 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.202 1.202 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.051 0.949 43 H 0.047 0.953 44 H 0.194 0.806 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.815 -3.282 26.410 26.761 hybrid contribution 0.152 -1.229 -0.079 1.241 sum -2.663 -4.510 26.330 26.846 Atomic orbital electron populations 1.21751 0.93654 1.02197 1.02194 1.22215 0.96443 0.99606 0.93439 0.89299 1.22136 0.87683 0.94601 0.97335 1.48630 1.30236 1.44756 1.11981 1.20383 0.81968 0.78084 0.88277 1.90713 1.28708 1.48136 1.73990 1.21677 1.01237 1.01312 0.92348 1.22350 0.95059 0.98837 0.95144 1.22979 0.98446 0.98569 0.97189 1.22841 0.96515 1.00168 0.98485 1.22976 0.96738 1.01715 0.96101 1.22388 0.97476 1.01432 0.79673 1.22763 0.95393 0.99304 0.95053 0.89682 1.20559 0.97914 0.92558 0.84726 1.42726 1.84276 1.06284 1.06911 1.19040 1.39079 0.94712 0.84642 0.89181 1.24662 1.01458 0.97450 0.95452 1.69699 1.53619 1.34816 1.00053 0.86575 0.77796 0.87105 0.77268 1.21071 1.21644 1.20227 0.92580 0.91490 0.92493 0.91414 0.91593 0.89022 0.89089 0.88287 0.91159 0.90443 0.91599 0.90236 0.90141 0.91480 0.90950 0.90396 0.94897 0.95282 0.80638 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.13 37.16 0.34 -0.94 16 2 C -0.10 -1.04 3.01 -88.78 -0.27 -1.31 16 3 H 0.09 0.92 8.04 -51.93 -0.42 0.50 16 4 C 0.11 1.02 6.08 -3.06 -0.02 1.00 16 5 N -0.62 -8.27 3.32 -170.38 -0.57 -8.84 16 6 C 0.52 7.33 7.85 -10.98 -0.09 7.24 16 7 O -0.54 -9.82 16.04 5.56 0.09 -9.73 16 8 C -0.13 -1.19 4.72 -27.88 -0.13 -1.32 16 9 C -0.10 -0.92 3.11 -89.80 -0.28 -1.20 16 10 C -0.13 -1.27 7.65 -25.77 -0.20 -1.47 16 11 C -0.14 -1.10 8.09 -25.78 -0.21 -1.30 16 12 C -0.14 -1.01 7.64 -25.92 -0.20 -1.21 16 13 C 0.11 1.78 6.33 -2.41 -0.02 1.76 16 14 C -0.11 -1.54 2.51 -88.35 -0.22 -1.76 16 15 H 0.08 1.28 8.04 -51.93 -0.42 0.87 16 16 C 0.17 3.14 5.72 -4.04 -0.02 3.12 16 17 N -0.76 -17.95 5.35 -59.91 -0.32 -18.27 16 18 C -0.24 -6.98 10.47 -15.06 -0.16 -7.13 16 19 H 0.09 2.73 8.06 -52.48 -0.42 2.30 16 20 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 21 N -0.93 -29.67 13.97 55.49 0.78 -28.90 16 22 Si 0.88 22.67 27.74 -169.99 -4.71 17.95 16 23 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 25 H -0.28 -6.80 6.52 56.52 0.37 -6.43 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 29 H 0.07 0.56 7.82 -51.93 -0.41 0.15 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.70 7.87 -51.93 -0.41 0.29 16 33 H 0.10 1.15 7.73 -51.93 -0.40 0.75 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.67 7.92 -51.93 -0.41 0.26 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 1.19 7.91 -51.93 -0.41 0.78 16 41 H 0.08 1.43 8.03 -51.93 -0.42 1.02 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.03 0.55 7.96 -51.93 -0.41 0.14 16 44 H 0.36 8.50 5.53 -40.82 -0.23 8.28 16 45 H 0.26 7.85 8.31 -40.82 -0.34 7.52 16 LS Contribution 357.70 15.07 5.39 5.39 Total: -1.00 -33.74 357.70 -9.08 -42.81 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -8.17 Total: 4.04 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -1.56 Total: -4.45 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: -0.11 Total: -56.01 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.71 Total: 17.95 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.74 -9.08 -42.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716980417.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.004 kcal (2) G-P(sol) polarization free energy of solvation -33.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds