Wall clock time and date at job start Tue Mar 31 2020 02:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 110.63989 * 2 1 4 4 C 1.54327 * 110.71949 * 123.14236 * 2 1 3 5 5 N 1.47021 * 107.26949 * 140.55935 * 4 2 1 6 6 C 1.34778 * 125.64785 * 181.02466 * 5 4 2 7 7 O 1.21278 * 119.99842 * 180.02562 * 6 5 4 8 8 C 1.50703 * 119.99651 * 0.02562 * 6 5 4 9 9 C 1.53003 * 109.46728 * 180.02562 * 8 6 5 10 10 C 1.53786 * 113.61503 * 85.86370 * 9 8 6 11 11 C 1.54049 * 86.98426 * 140.01654 * 10 9 8 12 12 C 1.53781 * 113.61337 * 183.47164 * 9 8 6 13 13 C 1.47423 * 108.70471 * 1.28394 * 5 4 2 14 14 C 1.55130 * 104.72543 * 335.55633 * 13 5 4 15 15 H 1.08998 * 111.19291 * 279.19312 * 14 13 5 16 16 C 1.52992 * 110.90901 * 155.26989 * 14 13 5 17 17 N 1.46502 * 109.46868 * 72.98124 * 16 14 13 18 18 C 1.36938 * 120.00137 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99883 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00225 * 179.97438 * 18 17 16 21 21 N 1.31612 * 119.99967 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99730 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47208 * 90.00165 * 22 20 18 24 24 H 1.48497 * 109.46952 * 209.99815 * 22 20 18 25 25 H 1.48497 * 109.47404 * 330.00037 * 22 20 18 26 26 H 1.08994 * 109.46944 * 298.31046 * 1 2 3 27 27 H 1.09000 * 109.47098 * 58.31128 * 1 2 3 28 28 H 1.09000 * 109.46440 * 178.31013 * 1 2 3 29 29 H 1.08999 * 109.88140 * 21.13797 * 4 2 1 30 30 H 1.09005 * 109.88091 * 259.97339 * 4 2 1 31 31 H 1.09000 * 109.47223 * 60.00290 * 8 6 5 32 32 H 1.08997 * 109.47305 * 299.99950 * 8 6 5 33 33 H 1.09002 * 112.85017 * 314.66753 * 9 8 6 34 34 H 1.08992 * 113.61675 * 254.61398 * 10 9 8 35 35 H 1.09000 * 113.60973 * 25.51686 * 10 9 8 36 36 H 1.09005 * 113.62125 * 220.02158 * 11 10 9 37 37 H 1.08996 * 113.68970 * 89.12734 * 11 10 9 38 38 H 1.08999 * 113.61567 * 334.48261 * 12 9 8 39 39 H 1.08998 * 113.61196 * 105.38615 * 12 9 8 40 40 H 1.08998 * 110.36612 * 94.48156 * 13 5 4 41 41 H 1.08994 * 110.36805 * 216.80903 * 13 5 4 42 42 H 1.09005 * 109.47420 * 192.97334 * 16 14 13 43 43 H 1.08998 * 109.47538 * 312.97915 * 16 14 13 44 44 H 0.96998 * 119.99972 * 359.97438 * 17 16 14 45 45 H 0.97005 * 119.99733 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0761 -0.7892 1.2086 5 7 3.2446 -1.5494 0.7416 6 6 3.9924 -2.3810 1.4938 7 8 4.9384 -2.9584 1.0014 8 6 3.6529 -2.5934 2.9466 9 6 4.6502 -3.5752 3.5651 10 6 5.9366 -2.9059 4.0771 11 6 5.8560 -3.8603 5.2837 12 6 4.3408 -3.9268 5.0298 13 6 3.4667 -1.2467 -0.6840 14 6 2.0791 -0.7975 -1.2125 15 1 1.4453 -1.6559 -1.4347 16 6 2.2279 0.1039 -2.4397 17 7 2.6329 -0.7040 -3.5927 18 6 2.8281 -0.1094 -4.8107 19 1 2.6839 0.9552 -4.9213 20 6 3.2124 -0.8748 -5.9032 21 7 3.4005 -0.3033 -7.0737 22 14 3.4625 -2.7161 -5.7118 23 1 2.1835 -3.4202 -5.9829 24 1 4.4953 -3.1779 -6.6738 25 1 3.9076 -3.0140 -4.3268 26 1 -0.3633 0.4873 0.9047 27 1 -0.3633 0.5398 -0.8745 28 1 -0.3632 -1.0273 -0.0303 29 1 1.3130 -1.4731 1.5801 30 1 2.3741 -0.0990 1.9979 31 1 2.6446 -2.9992 3.0286 32 1 3.7055 -1.6415 3.4750 33 1 4.8319 -4.4465 2.9359 34 1 6.8028 -3.0792 3.4387 35 1 5.8073 -1.8564 4.3413 36 1 6.1199 -3.3899 6.2310 37 1 6.3672 -4.8099 5.1258 38 1 3.7760 -3.1558 5.5540 39 1 3.9195 -4.9236 5.1600 40 1 4.1947 -0.4427 -0.7921 41 1 3.8032 -2.1381 -1.2132 42 1 1.2749 0.5884 -2.6524 43 1 2.9855 0.8627 -2.2436 44 1 2.7628 -1.6601 -3.4934 45 1 3.6687 -0.8382 -7.8371 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716980417.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:26 Heat of formation + Delta-G solvation = -37.326368 kcal Electronic energy + Delta-G solvation = -22224.595189 eV Core-core repulsion = 19048.453960 eV Total energy + Delta-G solvation = -3176.141229 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.36195 -39.83470 -38.64888 -36.62123 -34.29160 -33.29850 -31.90149 -30.61229 -27.39035 -27.20577 -26.44733 -24.92078 -23.92860 -22.40969 -21.31288 -20.40208 -20.16231 -19.60190 -17.93352 -17.43404 -16.90326 -16.62258 -16.02716 -15.89564 -15.37698 -15.35945 -15.11971 -14.78028 -14.60383 -14.19980 -13.75281 -13.62590 -13.50546 -13.38120 -13.28030 -13.09066 -12.86131 -12.72085 -12.51548 -12.35082 -12.14273 -11.89424 -11.83465 -11.63754 -11.49805 -11.43789 -11.24634 -11.06917 -11.01837 -10.78111 -9.68266 -9.32987 -8.06770 -5.39367 1.33411 1.35933 1.42394 1.62590 1.97371 2.43472 3.23403 3.29961 3.50847 3.58472 3.72855 3.74879 3.80519 3.93128 3.99561 4.08409 4.23320 4.35949 4.45469 4.47275 4.51469 4.54363 4.67360 4.71683 4.79891 4.81880 4.87663 4.89177 4.91777 5.01490 5.03050 5.10255 5.15746 5.17321 5.19591 5.23769 5.38214 5.40220 5.52541 5.63706 5.72741 6.17803 6.55012 7.04013 7.15418 7.80881 7.97834 9.14862 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020408 B = 0.003794 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.665896 B = 7377.639702 C = 8372.825820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 H 0.094 0.906 4 C 0.104 3.896 5 N -0.621 5.621 6 C 0.514 3.486 7 O -0.595 6.595 8 C -0.114 4.114 9 C -0.105 4.105 10 C -0.142 4.142 11 C -0.140 4.140 12 C -0.122 4.122 13 C 0.112 3.888 14 C -0.096 4.096 15 H 0.083 0.917 16 C 0.167 3.833 17 N -0.761 5.761 18 C -0.232 4.232 19 H 0.062 0.938 20 C -0.060 4.060 21 N -0.982 5.982 22 Si 0.949 3.051 23 H -0.273 1.273 24 H -0.295 1.295 25 H -0.264 1.264 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.069 0.931 34 H 0.041 0.959 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.042 0.958 42 H 0.040 0.960 43 H 0.026 0.974 44 H 0.363 0.637 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.363 -3.383 30.640 31.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.108 4.108 3 H 0.112 0.888 4 C -0.017 4.017 5 N -0.354 5.354 6 C 0.305 3.695 7 O -0.475 6.475 8 C -0.153 4.153 9 C -0.124 4.124 10 C -0.180 4.180 11 C -0.178 4.178 12 C -0.159 4.159 13 C -0.011 4.011 14 C -0.116 4.116 15 H 0.102 0.898 16 C 0.041 3.959 17 N -0.407 5.407 18 C -0.363 4.363 19 H 0.080 0.920 20 C -0.252 4.252 21 N -0.632 5.632 22 Si 0.777 3.223 23 H -0.199 1.199 24 H -0.221 1.221 25 H -0.189 1.189 26 H 0.103 0.897 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.044 0.956 44 H 0.195 0.805 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.828 -3.550 30.320 30.907 hybrid contribution 0.779 -1.022 -1.271 1.808 sum -4.049 -4.572 29.049 29.684 Atomic orbital electron populations 1.21740 0.91969 1.02588 1.03125 1.22226 0.97716 0.99359 0.91491 0.88751 1.22419 0.86779 0.95213 0.97289 1.48741 1.31185 1.44862 1.10653 1.21352 0.81043 0.77067 0.90012 1.90691 1.31223 1.50277 1.75346 1.21734 1.02230 1.02677 0.88639 1.22341 0.95576 0.98069 0.96398 1.23050 0.97445 0.99725 0.97775 1.22839 0.97187 0.99494 0.98241 1.22937 0.96435 1.02780 0.93730 1.22159 0.97856 0.99368 0.81711 1.22598 0.94949 0.99120 0.94911 0.89819 1.20737 0.97648 0.92833 0.84669 1.42805 1.84233 1.06773 1.06858 1.19064 1.37133 0.93638 0.86447 0.91995 1.25426 1.02351 1.02206 0.95227 1.69862 1.55749 1.36613 1.01017 0.85501 0.77852 0.81436 0.77546 1.19920 1.22137 1.18902 0.89700 0.92698 0.92248 0.88766 0.88501 0.86358 0.86257 0.91282 0.94033 0.89245 0.90085 0.90808 0.87874 0.90869 0.92353 0.93885 0.94188 0.95613 0.80467 0.93280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.13 71.98 0.66 -1.29 16 2 C -0.09 -1.60 3.01 -9.60 -0.03 -1.63 16 3 H 0.09 1.64 8.04 -2.38 -0.02 1.62 16 4 C 0.10 1.56 6.08 86.73 0.53 2.09 16 5 N -0.62 -15.37 3.32 -811.35 -2.70 -18.07 16 6 C 0.51 13.78 7.85 87.66 0.69 14.47 16 7 O -0.59 -22.36 16.04 -3.02 -0.05 -22.41 16 8 C -0.11 -1.77 4.72 29.85 0.14 -1.63 16 9 C -0.10 -1.87 3.11 -10.26 -0.03 -1.90 16 10 C -0.14 -2.56 7.65 31.21 0.24 -2.32 16 11 C -0.14 -1.88 8.09 31.21 0.25 -1.63 16 12 C -0.12 -1.38 7.64 31.12 0.24 -1.15 16 13 C 0.11 3.56 6.33 86.93 0.55 4.11 16 14 C -0.10 -2.69 2.51 -9.33 -0.02 -2.71 16 15 H 0.08 2.39 8.04 -2.39 -0.02 2.37 16 16 C 0.17 6.12 5.72 86.38 0.49 6.62 16 17 N -0.76 -36.33 5.35 -343.45 -1.84 -38.16 16 18 C -0.23 -13.49 10.47 84.03 0.88 -12.60 16 19 H 0.06 3.89 8.06 -2.91 -0.02 3.86 16 20 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 21 N -0.98 -64.14 13.97 21.65 0.30 -63.83 16 22 Si 0.95 47.66 27.74 68.60 1.90 49.56 16 23 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 24 H -0.29 -14.95 7.11 99.48 0.71 -14.24 16 25 H -0.26 -12.53 6.52 99.48 0.65 -11.89 16 26 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 29 H 0.09 1.00 7.82 -2.39 -0.02 0.98 16 30 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.12 1.24 7.87 -2.39 -0.02 1.22 16 33 H 0.07 1.64 7.73 -2.39 -0.02 1.63 16 34 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.09 1.36 7.92 -2.39 -0.02 1.34 16 36 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.10 0.76 8.10 -2.39 -0.02 0.74 16 39 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.06 1.97 7.91 -2.39 -0.02 1.95 16 41 H 0.04 1.64 8.03 -2.39 -0.02 1.62 16 42 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 43 H 0.03 0.97 7.96 -2.39 -0.02 0.95 16 44 H 0.36 17.02 5.53 -92.71 -0.51 16.50 16 45 H 0.26 16.08 8.31 -92.70 -0.77 15.31 16 Total: -1.00 -77.59 357.70 3.04 -74.54 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.37 Total: 21.15 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 5.05 Total: -2.78 kcal Atomic # 7 Polarization: -115.83 SS G_CDS: -4.23 Total: -120.06 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.05 Total: -22.41 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 1.90 Total: 49.56 kcal Total: -77.59 3.04 -74.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716980417.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.218 kcal (2) G-P(sol) polarization free energy of solvation -77.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds