Wall clock time and date at job start Tue Mar 31 2020 02:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50702 * 119.99492 * 2 1 4 4 C 1.52996 * 109.47742 * 0.02562 * 3 2 1 5 5 C 1.53003 * 109.46766 * 240.00162 * 3 2 1 6 6 C 1.50701 * 109.46725 * 120.00640 * 3 2 1 7 7 O 1.21273 * 120.00191 * 359.97438 * 6 3 2 8 8 N 1.34780 * 119.99698 * 179.97438 * 6 3 2 9 9 C 1.46505 * 120.00070 * 179.97438 * 8 6 3 10 10 H 1.08995 * 109.49459 * 325.00482 * 9 8 6 11 11 C 1.53041 * 109.51861 * 85.08057 * 9 8 6 12 12 C 1.53039 * 109.53990 * 58.60520 * 11 9 8 13 13 C 1.53197 * 109.31316 * 61.36122 * 12 11 9 14 14 N 1.46929 * 108.77431 * 305.36865 * 13 12 11 15 15 C 1.36943 * 120.62747 * 233.63044 * 14 13 12 16 16 H 1.07996 * 119.99973 * 150.14880 * 15 14 13 17 17 C 1.38812 * 120.00035 * 330.14673 * 15 14 13 18 18 N 1.31622 * 119.99879 * 344.49698 * 17 15 14 19 19 Si 1.86801 * 119.99910 * 164.49693 * 17 15 14 20 20 H 1.48493 * 109.46923 * 90.00134 * 19 17 15 21 21 H 1.48504 * 109.47056 * 210.00147 * 19 17 15 22 22 H 1.48501 * 109.47071 * 330.00019 * 19 17 15 23 23 C 1.46921 * 118.74095 * 53.60340 * 14 13 12 24 24 H 1.09001 * 109.58450 * 66.18308 * 23 14 13 25 25 C 1.52997 * 109.58562 * 186.60277 * 23 14 13 26 26 H 1.07998 * 120.00441 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00242 * 180.02562 * 1 2 3 28 28 H 1.07993 * 120.00078 * 180.02562 * 2 1 3 29 29 H 1.08993 * 109.47338 * 180.02562 * 4 3 2 30 30 H 1.09003 * 109.46933 * 300.00518 * 4 3 2 31 31 H 1.09006 * 109.46430 * 59.99892 * 4 3 2 32 32 H 1.09004 * 109.47094 * 300.00002 * 5 3 2 33 33 H 1.08995 * 109.47659 * 60.00582 * 5 3 2 34 34 H 1.09004 * 109.46866 * 180.02562 * 5 3 2 35 35 H 0.97008 * 120.00135 * 359.97438 * 8 6 3 36 36 H 1.08998 * 109.45649 * 178.62039 * 11 9 8 37 37 H 1.08996 * 109.46580 * 298.58258 * 11 9 8 38 38 H 1.08997 * 109.49849 * 301.41078 * 12 11 9 39 39 H 1.08996 * 109.52593 * 181.32498 * 12 11 9 40 40 H 1.08994 * 109.58866 * 185.57844 * 13 12 11 41 41 H 1.09002 * 109.58718 * 65.15342 * 13 12 11 42 42 H 0.97005 * 119.99663 * 179.97438 * 18 17 15 43 43 H 1.09005 * 109.46936 * 179.29196 * 25 23 14 44 44 H 1.08994 * 109.47830 * 299.29364 * 25 23 14 45 45 H 1.09004 * 109.47186 * 59.29808 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 1.0692 2.4681 0.0006 5 6 2.9429 1.3862 -1.2493 6 6 2.9298 1.3849 1.2304 7 8 2.9347 0.4721 2.0289 8 7 3.6994 2.4708 1.4434 9 6 4.5413 2.5486 2.6399 10 1 4.0328 2.0662 3.4745 11 6 5.8725 1.8415 2.3752 12 6 6.5721 2.4972 1.1825 13 6 6.8612 3.9657 1.5093 14 7 5.6058 4.6180 1.9058 15 6 5.1875 5.7634 1.2826 16 1 4.1324 5.9769 1.1965 17 6 6.1198 6.6501 0.7616 18 7 7.3833 6.5626 1.1200 19 14 5.5813 7.9676 -0.4482 20 1 5.1977 9.1948 0.2947 21 1 6.7011 8.2783 -1.3727 22 1 4.4169 7.4770 -1.2284 23 6 4.8073 4.0176 2.9831 24 1 5.3563 4.0796 3.9228 25 6 3.4776 4.7631 3.1125 26 1 -0.5401 0.9352 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8499 -0.9352 -0.0004 29 1 1.6141 3.4120 0.0002 30 1 0.4421 2.4105 -0.8891 31 1 0.4429 2.4100 0.8909 32 1 3.6513 0.5578 -1.2493 33 1 2.3163 1.3285 -2.1393 34 1 3.4882 2.3301 -1.2491 35 1 3.6957 3.2007 0.8046 36 1 6.5077 1.9212 3.2574 37 1 5.6878 0.7902 2.1548 38 1 5.9271 2.4398 0.3057 39 1 7.5090 1.9785 0.9794 40 1 7.2690 4.4626 0.6290 41 1 7.5777 4.0235 2.3287 42 1 8.0348 7.1821 0.7556 43 1 2.8816 4.3083 3.9037 44 1 3.6690 5.8080 3.3567 45 1 2.9346 4.7041 2.1691 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717855037.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:28 Heat of formation + Delta-G solvation = -21.731045 kcal Electronic energy + Delta-G solvation = -23999.915180 eV Core-core repulsion = 20824.450214 eV Total energy + Delta-G solvation = -3175.464965 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.44955 -39.47915 -37.16857 -35.58876 -34.01938 -33.40856 -31.88684 -30.68959 -28.29565 -27.85984 -26.82244 -25.11976 -23.72997 -22.39518 -22.01636 -20.25233 -19.52712 -18.25300 -17.91888 -17.19566 -16.74030 -16.26662 -15.91580 -15.71653 -15.28825 -15.16770 -14.98269 -14.56220 -14.39717 -14.23280 -13.54691 -13.33263 -13.26599 -13.05791 -12.93325 -12.85661 -12.72922 -12.64929 -12.40570 -12.33433 -12.19132 -12.07563 -11.91713 -11.66222 -11.61352 -11.35375 -11.01431 -10.70648 -10.47799 -10.21885 -9.86068 -8.58226 -7.79552 -5.26238 1.36925 1.50988 1.53879 1.61010 1.75387 2.47093 2.56305 3.37228 3.60470 3.66495 3.81706 3.99341 4.05217 4.10168 4.19743 4.22131 4.40127 4.49529 4.58092 4.67182 4.71515 4.76454 4.80278 4.87014 4.89973 4.95657 5.00045 5.05394 5.08000 5.14187 5.23101 5.25831 5.31882 5.35719 5.47285 5.56731 5.68755 5.74229 5.76913 5.81644 5.87846 6.46459 6.74410 7.21647 7.37240 7.91534 8.45710 9.27209 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018771 B = 0.006075 C = 0.005363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.293285 B = 4608.299542 C = 5219.461718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.140 4.140 3 C -0.052 4.052 4 C -0.141 4.141 5 C -0.134 4.134 6 C 0.520 3.480 7 O -0.586 6.586 8 N -0.694 5.694 9 C 0.142 3.858 10 H 0.075 0.925 11 C -0.115 4.115 12 C -0.125 4.125 13 C 0.180 3.820 14 N -0.594 5.594 15 C -0.246 4.246 16 H 0.080 0.920 17 C -0.048 4.048 18 N -0.936 5.936 19 Si 0.957 3.043 20 H -0.292 1.292 21 H -0.302 1.302 22 H -0.263 1.263 23 C 0.156 3.844 24 H 0.028 0.972 25 C -0.126 4.126 26 H 0.115 0.885 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.408 0.592 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.055 0.945 41 H -0.007 1.007 42 H 0.246 0.754 43 H 0.061 0.939 44 H 0.047 0.953 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.409 -9.215 -3.758 15.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.159 4.159 3 C -0.055 4.055 4 C -0.198 4.198 5 C -0.191 4.191 6 C 0.307 3.693 7 O -0.467 6.467 8 N -0.345 5.345 9 C 0.035 3.965 10 H 0.093 0.907 11 C -0.153 4.153 12 C -0.164 4.164 13 C 0.054 3.946 14 N -0.318 5.318 15 C -0.376 4.376 16 H 0.098 0.902 17 C -0.243 4.243 18 N -0.582 5.582 19 Si 0.786 3.214 20 H -0.219 1.219 21 H -0.229 1.229 22 H -0.188 1.188 23 C 0.050 3.950 24 H 0.045 0.955 25 C -0.184 4.184 26 H 0.133 0.867 27 H 0.129 0.871 28 H 0.118 0.882 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.245 0.755 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.011 0.989 42 H 0.055 0.945 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.275 -9.723 -3.233 15.235 hybrid contribution 0.656 1.149 -0.520 1.421 sum -10.618 -8.574 -3.752 14.154 Atomic orbital electron populations 1.24144 0.95308 1.03295 0.99363 1.22483 0.96221 0.96170 1.01008 1.19900 0.95741 0.96618 0.93247 1.21958 0.98496 0.95769 1.03606 1.21804 0.99160 1.02313 0.95839 1.20944 0.79599 0.81345 0.87365 1.90618 1.68342 1.39153 1.48609 1.45958 1.42821 1.20574 1.25103 1.21288 0.90432 0.97025 0.87708 0.90729 1.21705 0.96316 0.98394 0.98923 1.21944 0.99511 0.97182 0.97754 1.20562 0.86935 0.89568 0.97502 1.44311 1.23054 1.26350 1.38093 1.19466 0.92173 0.96847 1.29161 0.90197 1.25773 0.96112 0.99575 1.02861 1.70186 1.02645 1.39542 1.45853 0.85434 0.77193 0.79587 0.79162 1.21889 1.22868 1.18763 1.20834 0.92914 0.90557 0.90718 0.95453 1.21690 0.95544 0.99812 1.01351 0.86708 0.87141 0.88160 0.91794 0.89048 0.92042 0.92772 0.89399 0.91965 0.75504 0.91749 0.92885 0.92668 0.92135 0.92635 0.98909 0.94531 0.91987 0.93384 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.47 13.70 67.78 0.93 -2.54 16 2 C -0.14 -3.26 8.00 25.65 0.21 -3.06 16 3 C -0.05 -1.25 0.84 -53.67 -0.05 -1.29 16 4 C -0.14 -2.81 7.02 71.98 0.51 -2.31 16 5 C -0.13 -2.89 8.35 71.98 0.60 -2.29 16 6 C 0.52 16.30 6.44 87.66 0.56 16.87 16 7 O -0.59 -22.34 15.70 -3.01 -0.05 -22.38 16 8 N -0.69 -22.02 3.26 -442.17 -1.44 -23.46 16 9 C 0.14 4.91 2.32 45.07 0.10 5.02 16 10 H 0.07 2.62 7.58 -2.39 -0.02 2.61 16 11 C -0.11 -3.98 5.58 30.62 0.17 -3.81 16 12 C -0.12 -4.61 5.93 30.67 0.18 -4.42 16 13 C 0.18 8.23 5.28 86.36 0.46 8.69 16 14 N -0.59 -26.78 2.64 -675.24 -1.79 -28.56 16 15 C -0.25 -12.00 8.58 84.03 0.72 -11.28 16 16 H 0.08 3.67 6.23 -2.91 -0.02 3.66 16 17 C -0.05 -2.49 4.94 84.86 0.42 -2.07 16 18 N -0.94 -52.94 11.23 21.65 0.24 -52.70 16 19 Si 0.96 42.13 29.58 68.60 2.03 44.16 16 20 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 22 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 23 C 0.16 6.01 3.20 44.97 0.14 6.15 16 24 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 25 C -0.13 -4.32 7.72 71.98 0.56 -3.77 16 26 H 0.11 1.86 5.69 -2.91 -0.02 1.84 16 27 H 0.11 1.75 8.06 -2.91 -0.02 1.72 16 28 H 0.10 2.50 8.06 -2.91 -0.02 2.48 16 29 H 0.06 1.33 7.57 -2.39 -0.02 1.31 16 30 H 0.09 1.40 7.50 -2.39 -0.02 1.39 16 31 H 0.06 1.24 7.50 -2.38 -0.02 1.23 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.06 1.42 7.56 -2.38 -0.02 1.41 16 35 H 0.41 13.10 6.60 -92.70 -0.61 12.49 16 36 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.05 2.02 7.53 -2.39 -0.02 2.00 16 39 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.06 2.88 6.15 -2.39 -0.01 2.86 16 41 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 42 H 0.25 13.70 8.31 -92.70 -0.77 12.93 16 43 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 44 H 0.05 1.78 7.67 -2.39 -0.02 1.76 16 45 H 0.06 1.95 6.37 -2.38 -0.02 1.93 16 Total: -1.00 -60.32 345.13 4.86 -55.47 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: 0.34 Total: 27.58 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 5.51 Total: -0.11 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -2.98 Total: -104.72 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.05 Total: -22.38 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -60.32 4.86 -55.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717855037.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.734 kcal (2) G-P(sol) polarization free energy of solvation -60.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds