Wall clock time and date at job start Tue Mar 31 2020 02:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47237 * 2 1 4 4 C 1.50701 * 109.47311 * 120.00136 * 2 1 3 5 5 O 1.21285 * 119.99793 * 119.99584 * 4 2 1 6 6 N 1.34776 * 119.99967 * 300.00400 * 4 2 1 7 7 C 1.46496 * 119.99761 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.46971 * 184.84377 * 7 6 4 9 9 N 1.46499 * 110.01907 * 54.63989 * 8 7 6 10 10 C 1.36937 * 119.99585 * 61.62415 * 9 8 7 11 11 H 1.08001 * 120.00090 * 354.39128 * 10 9 8 12 12 C 1.38813 * 119.99852 * 174.38735 * 10 9 8 13 13 N 1.31617 * 119.99912 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00154 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46830 * 90.00154 * 14 12 10 16 16 H 1.48500 * 109.47140 * 210.00352 * 14 12 10 17 17 H 1.48500 * 109.47281 * 330.00295 * 14 12 10 18 18 C 1.54271 * 110.03281 * 293.19890 * 8 7 6 19 19 C 1.54890 * 104.19908 * 217.10643 * 18 8 7 20 20 C 1.54886 * 102.74688 * 37.94080 * 19 18 8 21 21 C 1.53878 * 110.03159 * 176.03512 * 8 7 6 22 22 C 1.53003 * 109.47235 * 240.00558 * 2 1 3 23 23 C 1.52999 * 117.50269 * 128.62143 * 22 2 1 24 24 C 1.52996 * 60.00036 * 252.51006 * 23 22 2 25 25 H 1.08999 * 109.47315 * 59.99886 * 1 2 3 26 26 H 1.09001 * 109.46981 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47540 * 299.99564 * 1 2 3 28 28 H 0.96997 * 120.00200 * 359.97438 * 6 4 2 29 29 H 1.09004 * 109.47213 * 64.84426 * 7 6 4 30 30 H 1.08997 * 109.47268 * 304.84203 * 7 6 4 31 31 H 0.97002 * 120.00406 * 241.62459 * 9 8 7 32 32 H 0.97001 * 119.99966 * 179.97438 * 13 12 10 33 33 H 1.09004 * 110.48333 * 335.78629 * 18 8 7 34 34 H 1.08995 * 110.48245 * 98.42350 * 18 8 7 35 35 H 1.09001 * 110.75461 * 279.63020 * 19 18 8 36 36 H 1.08997 * 110.75815 * 156.25410 * 19 18 8 37 37 H 1.08999 * 110.49002 * 203.38308 * 20 19 18 38 38 H 1.09000 * 110.48751 * 80.73758 * 20 19 18 39 39 H 1.09002 * 110.02787 * 238.56364 * 21 8 7 40 40 H 1.08994 * 110.03603 * 359.97438 * 21 8 7 41 41 H 1.09005 * 115.54908 * 274.32636 * 22 2 1 42 42 H 1.08999 * 117.49578 * 0.02562 * 23 22 2 43 43 H 1.08994 * 117.49936 * 145.01701 * 23 22 2 44 44 H 1.09006 * 117.49765 * 252.51265 * 24 23 22 45 45 H 1.09001 * 117.50350 * 107.48690 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7296 -1.6966 1.1191 6 7 1.7067 -0.2501 2.4546 7 6 2.1946 -0.9410 3.6506 8 6 1.5876 -0.2935 4.8969 9 7 0.1267 -0.2723 4.7900 10 6 -0.5702 -1.4475 4.6987 11 1 -0.0400 -2.3846 4.6142 12 6 -1.9582 -1.4344 4.7149 13 7 -2.6043 -0.2923 4.8175 14 14 -2.9090 -3.0374 4.5897 15 1 -3.1458 -3.5801 5.9516 16 1 -4.2120 -2.7893 3.9222 17 1 -2.1249 -4.0173 3.7958 18 6 2.1273 1.1422 5.0626 19 6 2.2889 1.3130 6.5936 20 6 2.7961 -0.0803 7.0412 21 6 2.0129 -1.0709 6.1550 22 6 2.0400 -0.7211 -1.2493 23 6 3.0741 0.0053 -2.1117 24 6 1.6357 -0.1493 -2.6096 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8899 28 1 1.1493 0.5388 2.5436 29 1 3.2812 -0.8669 3.6953 30 1 1.9035 -1.9905 3.6081 31 1 -0.3470 0.5742 4.7839 32 1 -3.5742 -0.2831 4.8284 33 1 3.0904 1.2477 4.5632 34 1 1.4123 1.8659 4.6713 35 1 1.3309 1.5435 7.0598 36 1 3.0256 2.0835 6.8207 37 1 2.5692 -0.2488 8.0940 38 1 3.8672 -0.1723 6.8614 39 1 1.1322 -1.4315 6.6864 40 1 2.6513 -1.9096 5.8777 41 1 2.1267 -1.8044 -1.1644 42 1 3.3914 0.9968 -1.7888 43 1 3.8415 -0.5999 -2.5942 44 1 1.4568 -0.8564 -3.4197 45 1 1.0063 0.7406 -2.6146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753663195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:28 Heat of formation + Delta-G solvation = -22.495170 kcal Electronic energy + Delta-G solvation = -23096.850564 eV Core-core repulsion = 19921.352464 eV Total energy + Delta-G solvation = -3175.498100 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.70170 -38.37907 -36.96607 -34.05380 -33.31599 -31.97704 -30.46793 -28.30172 -27.72510 -25.08998 -24.12587 -23.15634 -22.25312 -20.98560 -20.23725 -19.29925 -18.52728 -17.20832 -16.80471 -15.86633 -15.34269 -14.95112 -14.82892 -14.38789 -14.09518 -13.98229 -13.37925 -13.23319 -13.11297 -12.63595 -12.54128 -12.12415 -11.95339 -11.68223 -11.51958 -11.39531 -11.00244 -10.83434 -10.76375 -10.69286 -10.58206 -10.50105 -10.34435 -10.30296 -10.07160 -9.92684 -9.81996 -9.64482 -9.23180 -8.91735 -8.37198 -7.01257 -5.80992 -3.09715 3.15316 3.41307 3.48107 3.49573 3.65879 3.96088 4.56630 4.69689 4.92231 4.96937 5.09933 5.13430 5.19269 5.23842 5.39479 5.56276 5.57395 5.60608 5.62839 5.68657 5.78146 5.86990 5.93388 5.97018 5.99802 6.09525 6.10871 6.13392 6.16029 6.24688 6.33940 6.36554 6.44436 6.48434 6.58604 6.64446 6.73321 6.85043 7.04243 7.17102 7.72455 8.13295 8.37815 8.78658 9.49644 10.03588 10.39399 11.41044 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012545 B = 0.006210 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.442722 B = 4507.770041 C = 6010.223411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.079 4.079 3 H 0.090 0.910 4 C 0.516 3.484 5 O -0.556 6.556 6 N -0.700 5.700 7 C 0.119 3.881 8 C 0.188 3.812 9 N -0.711 5.711 10 C -0.230 4.230 11 H 0.068 0.932 12 C -0.009 4.009 13 N -0.931 5.931 14 Si 0.899 3.101 15 H -0.290 1.290 16 H -0.292 1.292 17 H -0.282 1.282 18 C -0.123 4.123 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.130 4.130 22 C -0.128 4.128 23 C -0.180 4.180 24 C -0.181 4.181 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.401 0.599 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.383 0.617 32 H 0.254 0.746 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.082 0.918 40 H 0.051 0.949 41 H 0.115 0.885 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.656 5.182 -6.425 12.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.100 4.100 3 H 0.108 0.892 4 C 0.301 3.699 5 O -0.435 6.435 6 N -0.349 5.349 7 C -0.008 4.008 8 C 0.096 3.904 9 N -0.352 5.352 10 C -0.361 4.361 11 H 0.086 0.914 12 C -0.204 4.204 13 N -0.580 5.580 14 Si 0.731 3.269 15 H -0.218 1.218 16 H -0.219 1.219 17 H -0.208 1.208 18 C -0.161 4.161 19 C -0.156 4.156 20 C -0.158 4.158 21 C -0.170 4.170 22 C -0.147 4.147 23 C -0.217 4.217 24 C -0.218 4.218 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.236 0.764 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.218 0.782 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.069 0.931 41 H 0.133 0.867 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.061 4.307 -6.485 12.721 hybrid contribution -1.105 -0.351 0.023 1.160 sum 8.955 3.956 -6.462 11.731 Atomic orbital electron populations 1.21730 0.92193 1.03296 1.02575 1.20831 0.97691 0.99455 0.92049 0.89196 1.20381 0.80189 0.84587 0.84712 1.90630 1.39137 1.26754 1.86978 1.45723 1.52341 1.31722 1.05121 1.21925 0.96227 0.97485 0.85115 1.20454 0.86146 0.92342 0.91443 1.42510 0.98619 1.06533 1.87546 1.19080 0.88577 0.86705 1.41716 0.91362 1.24674 0.96443 0.96459 1.02872 1.69647 1.07156 1.23663 1.57507 0.86304 0.79631 0.83435 0.77561 1.21785 1.21881 1.20803 1.22587 1.00268 0.96940 0.96343 1.22409 1.00769 0.96568 0.95893 1.22307 0.98844 0.95515 0.99159 1.22666 1.00077 0.97394 0.96874 1.22048 1.02728 1.00147 0.89753 1.22978 0.92480 1.01798 1.04437 1.22956 0.98013 1.03285 0.97500 0.91985 0.91864 0.91259 0.76436 0.93267 0.91747 0.78200 0.93609 0.91836 0.91590 0.91262 0.92637 0.92469 0.92623 0.89945 0.93061 0.86735 0.89068 0.89026 0.88936 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.93 37.15 0.33 -1.62 16 2 C -0.08 -1.10 2.88 -91.77 -0.26 -1.36 16 3 H 0.09 1.08 7.90 -51.93 -0.41 0.67 16 4 C 0.52 9.12 7.15 -10.99 -0.08 9.04 16 5 O -0.56 -11.69 15.64 5.55 0.09 -11.60 16 6 N -0.70 -12.12 5.11 -60.30 -0.31 -12.43 16 7 C 0.12 2.18 4.04 -4.04 -0.02 2.17 16 8 C 0.19 3.39 0.68 -130.70 -0.09 3.30 16 9 N -0.71 -15.75 4.63 -46.19 -0.21 -15.97 16 10 C -0.23 -5.89 8.52 -15.06 -0.13 -6.02 16 11 H 0.07 1.79 7.28 -52.49 -0.38 1.41 16 12 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 13 N -0.93 -26.49 13.07 55.49 0.73 -25.76 16 14 Si 0.90 22.06 29.55 -169.99 -5.02 17.03 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 16 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 18 C -0.12 -1.86 5.62 -25.07 -0.14 -2.00 16 19 C -0.12 -1.70 6.91 -24.74 -0.17 -1.87 16 20 C -0.12 -1.74 6.83 -25.07 -0.17 -1.92 16 21 C -0.13 -2.27 5.93 -25.61 -0.15 -2.42 16 22 C -0.13 -1.72 4.76 -90.62 -0.43 -2.15 16 23 C -0.18 -2.01 10.18 -26.73 -0.27 -2.28 16 24 C -0.18 -1.92 9.73 -26.73 -0.26 -2.18 16 25 H 0.06 0.72 7.29 -51.93 -0.38 0.34 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.07 1.02 7.56 -51.93 -0.39 0.63 16 28 H 0.40 6.58 7.42 -40.82 -0.30 6.28 16 29 H 0.05 0.86 8.03 -51.93 -0.42 0.44 16 30 H 0.06 1.37 7.48 -51.93 -0.39 0.99 16 31 H 0.38 9.09 7.45 -40.82 -0.30 8.79 16 32 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.06 0.88 7.78 -51.93 -0.40 0.47 16 34 H 0.07 1.00 7.72 -51.93 -0.40 0.60 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.67 7.36 -51.93 -0.38 1.29 16 40 H 0.05 0.86 7.67 -51.93 -0.40 0.46 16 41 H 0.11 1.77 7.47 -51.93 -0.39 1.38 16 42 H 0.09 0.94 8.05 -51.93 -0.42 0.52 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.09 0.91 7.61 -51.93 -0.40 0.51 16 LS Contribution 356.36 15.07 5.37 5.37 Total: -1.00 -29.23 356.36 -9.16 -38.39 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -7.86 Total: 14.61 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -1.94 Total: -9.64 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 0.20 Total: -54.16 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.23 -9.16 -38.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753663195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.894 kcal (2) G-P(sol) polarization free energy of solvation -29.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds