Wall clock time and date at job start Tue Mar 31 2020 02:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47083 * 2 1 4 4 C 1.50701 * 109.47071 * 239.99728 * 2 1 3 5 5 O 1.21273 * 120.00712 * 240.00422 * 4 2 1 6 6 N 1.34785 * 119.99668 * 60.00125 * 4 2 1 7 7 C 1.46495 * 119.99638 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47001 * 184.55116 * 7 6 4 9 9 N 1.46503 * 110.81958 * 300.98296 * 8 7 6 10 10 C 1.36946 * 119.99589 * 300.64164 * 9 8 7 11 11 H 1.07998 * 119.99431 * 354.70679 * 10 9 8 12 12 C 1.38806 * 120.00023 * 174.70754 * 10 9 8 13 13 N 1.31619 * 119.99876 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00194 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46843 * 60.00075 * 14 12 10 16 16 H 1.48500 * 109.47142 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47051 * 300.00103 * 14 12 10 18 18 C 1.54895 * 110.75534 * 64.31316 * 8 7 6 19 19 C 1.54262 * 104.19743 * 156.25560 * 18 8 7 20 20 C 1.53870 * 106.59815 * 336.39653 * 19 18 8 21 21 C 1.54262 * 106.60037 * 359.97438 * 20 19 18 22 22 C 1.53005 * 109.46918 * 120.00484 * 2 1 3 23 23 C 1.53005 * 117.49389 * 248.61846 * 22 2 1 24 24 C 1.53002 * 117.49455 * 179.97438 * 22 2 1 25 25 H 1.09004 * 109.46997 * 300.00181 * 1 2 3 26 26 H 1.08998 * 109.46883 * 60.00096 * 1 2 3 27 27 H 1.08996 * 109.47083 * 179.97438 * 1 2 3 28 28 H 0.96996 * 119.99725 * 0.02562 * 6 4 2 29 29 H 1.09000 * 109.47101 * 64.56021 * 7 6 4 30 30 H 1.08991 * 109.47627 * 304.55401 * 7 6 4 31 31 H 0.96994 * 120.00371 * 120.64126 * 9 8 7 32 32 H 0.97008 * 120.00408 * 179.97438 * 13 12 10 33 33 H 1.09002 * 110.48242 * 37.57823 * 18 8 7 34 34 H 1.08997 * 110.48693 * 274.93807 * 18 8 7 35 35 H 1.09005 * 110.03250 * 95.67292 * 19 18 8 36 36 H 1.08993 * 110.03737 * 217.10578 * 19 18 8 37 37 H 1.09003 * 110.03693 * 119.28568 * 20 19 18 38 38 H 1.09002 * 110.02959 * 240.71015 * 20 19 18 39 39 H 1.09000 * 110.48825 * 142.29564 * 21 20 19 40 40 H 1.09004 * 110.48708 * 264.93028 * 21 20 19 41 41 H 1.08994 * 115.55073 * 34.32713 * 22 2 1 42 42 H 1.09005 * 117.49830 * 0.02562 * 23 22 2 43 43 H 1.08994 * 117.49504 * 145.01734 * 23 22 2 44 44 H 1.08993 * 117.49468 * 214.97125 * 24 22 2 45 45 H 1.08997 * 117.50169 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7295 -1.6965 -1.1193 6 7 1.7067 -0.2500 -2.4546 7 6 2.1955 -0.9403 -3.6507 8 6 1.7810 -0.1560 -4.8973 9 7 0.3237 -0.0230 -4.9682 10 6 -0.4645 -1.1419 -5.0152 11 1 -0.0107 -2.1194 -5.0864 12 6 -1.8464 -1.0198 -4.9714 13 7 -2.3993 0.1715 -4.8841 14 14 -2.9216 -2.5460 -5.0363 15 1 -2.6024 -3.4256 -3.8832 16 1 -4.3508 -2.1476 -4.9750 17 1 -2.6661 -3.2779 -6.3029 18 6 2.4609 1.2355 -4.9217 19 6 2.4688 1.6266 -6.4139 20 6 2.3878 0.3141 -7.2128 21 6 2.3341 -0.8289 -6.1782 22 6 2.0400 -0.7214 1.2492 23 6 2.7419 0.1225 2.3151 24 6 3.5550 -0.8287 1.4339 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.1494 0.5389 -2.5435 29 1 1.7674 -1.9418 -3.6926 30 1 3.2823 -1.0111 -3.6108 31 1 -0.0829 0.8575 -4.9817 32 1 -3.3652 0.2570 -4.8539 33 1 3.4795 1.1691 -4.5393 34 1 1.8809 1.9537 -4.3421 35 1 1.6071 2.2549 -6.6398 36 1 3.3906 2.1552 -6.6565 37 1 1.4869 0.3053 -7.8264 38 1 3.2704 0.2056 -7.8432 39 1 1.6614 -1.6175 -6.5155 40 1 3.3323 -1.2286 -5.9992 41 1 1.4310 -1.5586 1.5901 42 1 2.8400 1.1916 2.1266 43 1 2.5946 -0.1594 3.3576 44 1 3.9424 -1.7361 1.8970 45 1 4.1884 -0.3859 0.6653 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753663196.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:31 Heat of formation + Delta-G solvation = -22.842899 kcal Electronic energy + Delta-G solvation = -23166.899415 eV Core-core repulsion = 19991.386236 eV Total energy + Delta-G solvation = -3175.513179 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.70543 -38.33939 -36.74806 -34.00608 -33.27400 -32.13576 -30.39110 -28.23508 -27.89784 -24.92478 -23.96825 -23.35529 -22.23725 -21.14193 -19.94232 -19.28182 -18.60480 -17.08930 -16.60168 -15.79828 -15.48768 -15.01493 -14.61923 -14.52606 -14.14297 -14.08568 -13.45873 -13.28796 -13.06084 -12.48307 -12.37002 -12.13927 -11.81003 -11.54233 -11.44268 -11.35335 -11.09174 -10.88836 -10.84853 -10.71770 -10.61486 -10.51961 -10.35531 -10.28534 -9.93808 -9.90575 -9.79626 -9.64399 -9.16247 -8.88737 -8.33820 -7.01867 -5.81234 -3.09946 3.17242 3.41950 3.46739 3.48351 3.61743 4.14385 4.55885 4.66611 4.97012 5.01590 5.14461 5.17429 5.21678 5.24283 5.42058 5.45628 5.55373 5.65972 5.67129 5.70294 5.84672 5.91157 5.96564 6.03393 6.04640 6.12557 6.15353 6.18314 6.24119 6.28264 6.29183 6.37616 6.45448 6.49327 6.57884 6.70503 6.79053 6.82848 7.02341 7.15293 7.69560 8.16170 8.37341 8.81209 9.49393 10.03291 10.39268 11.40759 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013287 B = 0.006113 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.803001 B = 4579.132624 C = 5943.511283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.080 4.080 3 H 0.090 0.910 4 C 0.511 3.489 5 O -0.551 6.551 6 N -0.702 5.702 7 C 0.122 3.878 8 C 0.188 3.812 9 N -0.706 5.706 10 C -0.231 4.231 11 H 0.068 0.932 12 C -0.008 4.008 13 N -0.932 5.932 14 Si 0.901 3.099 15 H -0.287 1.287 16 H -0.292 1.292 17 H -0.287 1.287 18 C -0.122 4.122 19 C -0.117 4.117 20 C -0.111 4.111 21 C -0.131 4.131 22 C -0.129 4.129 23 C -0.187 4.187 24 C -0.155 4.155 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.402 0.598 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.385 0.615 32 H 0.255 0.745 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.787 3.952 6.788 12.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.101 4.101 3 H 0.108 0.892 4 C 0.297 3.703 5 O -0.429 6.429 6 N -0.352 5.352 7 C -0.004 4.004 8 C 0.096 3.904 9 N -0.347 5.347 10 C -0.362 4.362 11 H 0.086 0.914 12 C -0.204 4.204 13 N -0.580 5.580 14 Si 0.732 3.268 15 H -0.213 1.213 16 H -0.218 1.218 17 H -0.214 1.214 18 C -0.160 4.160 19 C -0.154 4.154 20 C -0.149 4.149 21 C -0.171 4.171 22 C -0.148 4.148 23 C -0.224 4.224 24 C -0.192 4.192 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.237 0.763 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.219 0.781 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.123 0.877 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.174 3.097 6.838 12.644 hybrid contribution -1.207 -0.269 -0.177 1.249 sum 8.967 2.828 6.661 11.523 Atomic orbital electron populations 1.21734 0.92255 1.03075 1.02776 1.20874 0.97761 0.99477 0.92000 0.89153 1.20475 0.80383 0.84798 0.84662 1.90637 1.38829 1.26468 1.86960 1.45786 1.52432 1.31892 1.05112 1.21723 0.96801 0.97095 0.84801 1.20744 0.86205 0.92175 0.91323 1.42279 0.98052 1.06577 1.87813 1.19029 0.87827 0.87177 1.42170 0.91384 1.24655 0.96603 0.96249 1.02861 1.69636 1.10056 1.20832 1.57480 0.86370 0.79851 0.82710 0.77890 1.21342 1.21798 1.21354 1.22548 0.99809 0.97220 0.96448 1.22024 1.00576 0.97654 0.95178 1.21936 1.00568 0.94595 0.97756 1.22751 0.99489 0.98322 0.96558 1.21931 0.95858 1.01231 0.95740 1.23087 1.05720 0.97469 0.96159 1.22741 0.93939 1.00781 1.01779 0.91875 0.91176 0.92044 0.76302 0.91872 0.92940 0.78092 0.93549 0.91843 0.91878 0.91991 0.93034 0.91823 0.93333 0.90889 0.93007 0.87748 0.89058 0.89064 0.89135 0.89078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.07 37.16 0.34 -1.60 16 2 C -0.08 -1.10 2.88 -91.77 -0.26 -1.37 16 3 H 0.09 1.09 7.90 -51.93 -0.41 0.68 16 4 C 0.51 8.90 7.03 -10.98 -0.08 8.82 16 5 O -0.55 -11.22 15.08 5.56 0.08 -11.14 16 6 N -0.70 -12.22 5.15 -60.30 -0.31 -12.53 16 7 C 0.12 2.25 4.46 -4.04 -0.02 2.23 16 8 C 0.19 3.38 0.48 -129.81 -0.06 3.32 16 9 N -0.71 -15.58 4.80 -45.38 -0.22 -15.80 16 10 C -0.23 -5.88 8.62 -15.06 -0.13 -6.01 16 11 H 0.07 1.75 7.16 -52.49 -0.38 1.38 16 12 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 13 N -0.93 -26.32 13.06 55.49 0.72 -25.60 16 14 Si 0.90 21.93 29.55 -169.99 -5.02 16.90 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 16 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 C -0.12 -1.86 5.45 -25.07 -0.14 -2.00 16 19 C -0.12 -1.72 6.78 -25.62 -0.17 -1.89 16 20 C -0.11 -1.74 6.78 -25.62 -0.17 -1.91 16 21 C -0.13 -2.25 5.86 -25.07 -0.15 -2.40 16 22 C -0.13 -1.70 4.72 -90.61 -0.43 -2.13 16 23 C -0.19 -2.00 10.18 -26.70 -0.27 -2.27 16 24 C -0.16 -1.98 8.97 -26.70 -0.24 -2.22 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.07 1.04 7.56 -51.93 -0.39 0.65 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.40 6.80 7.53 -40.82 -0.31 6.49 16 29 H 0.06 1.34 7.50 -51.93 -0.39 0.95 16 30 H 0.05 0.92 8.13 -51.93 -0.42 0.50 16 31 H 0.38 9.13 7.71 -40.82 -0.31 8.81 16 32 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.06 0.89 8.04 -51.93 -0.42 0.47 16 34 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 1.41 7.23 -51.93 -0.38 1.04 16 40 H 0.05 0.80 8.05 -51.93 -0.42 0.38 16 41 H 0.10 1.41 8.11 -51.93 -0.42 0.98 16 42 H 0.09 0.89 8.05 -51.93 -0.42 0.47 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.09 1.24 8.10 -51.93 -0.42 0.82 16 LS Contribution 358.37 15.07 5.40 5.40 Total: -1.00 -28.66 358.37 -9.24 -37.91 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -8.02 Total: 14.58 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -1.88 Total: -9.73 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.20 Total: -53.93 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.08 Total: -11.14 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.66 -9.24 -37.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753663196.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.064 kcal (2) G-P(sol) polarization free energy of solvation -28.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds