Wall clock time and date at job start Tue Mar 31 2020 02:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47083 * 2 1 4 4 C 1.50701 * 109.47071 * 239.99728 * 2 1 3 5 5 O 1.21273 * 120.00712 * 240.00422 * 4 2 1 6 6 N 1.34785 * 119.99668 * 60.00125 * 4 2 1 7 7 C 1.46495 * 119.99638 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47001 * 184.55116 * 7 6 4 9 9 N 1.46503 * 110.81958 * 300.98296 * 8 7 6 10 10 C 1.36946 * 119.99589 * 300.64164 * 9 8 7 11 11 H 1.07998 * 119.99431 * 354.70679 * 10 9 8 12 12 C 1.38806 * 120.00023 * 174.70754 * 10 9 8 13 13 N 1.31619 * 119.99876 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00194 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46843 * 60.00075 * 14 12 10 16 16 H 1.48500 * 109.47142 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47051 * 300.00103 * 14 12 10 18 18 C 1.54895 * 110.75534 * 64.31316 * 8 7 6 19 19 C 1.54262 * 104.19743 * 156.25560 * 18 8 7 20 20 C 1.53870 * 106.59815 * 336.39653 * 19 18 8 21 21 C 1.54262 * 106.60037 * 359.97438 * 20 19 18 22 22 C 1.53005 * 109.46918 * 120.00484 * 2 1 3 23 23 C 1.53005 * 117.49389 * 248.61846 * 22 2 1 24 24 C 1.53002 * 117.49455 * 179.97438 * 22 2 1 25 25 H 1.09004 * 109.46997 * 300.00181 * 1 2 3 26 26 H 1.08998 * 109.46883 * 60.00096 * 1 2 3 27 27 H 1.08996 * 109.47083 * 179.97438 * 1 2 3 28 28 H 0.96996 * 119.99725 * 0.02562 * 6 4 2 29 29 H 1.09000 * 109.47101 * 64.56021 * 7 6 4 30 30 H 1.08991 * 109.47627 * 304.55401 * 7 6 4 31 31 H 0.96994 * 120.00371 * 120.64126 * 9 8 7 32 32 H 0.97008 * 120.00408 * 179.97438 * 13 12 10 33 33 H 1.09002 * 110.48242 * 37.57823 * 18 8 7 34 34 H 1.08997 * 110.48693 * 274.93807 * 18 8 7 35 35 H 1.09005 * 110.03250 * 95.67292 * 19 18 8 36 36 H 1.08993 * 110.03737 * 217.10578 * 19 18 8 37 37 H 1.09003 * 110.03693 * 119.28568 * 20 19 18 38 38 H 1.09002 * 110.02959 * 240.71015 * 20 19 18 39 39 H 1.09000 * 110.48825 * 142.29564 * 21 20 19 40 40 H 1.09004 * 110.48708 * 264.93028 * 21 20 19 41 41 H 1.08994 * 115.55073 * 34.32713 * 22 2 1 42 42 H 1.09005 * 117.49830 * 0.02562 * 23 22 2 43 43 H 1.08994 * 117.49504 * 145.01734 * 23 22 2 44 44 H 1.08993 * 117.49468 * 214.97125 * 24 22 2 45 45 H 1.08997 * 117.50169 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7295 -1.6965 -1.1193 6 7 1.7067 -0.2500 -2.4546 7 6 2.1955 -0.9403 -3.6507 8 6 1.7810 -0.1560 -4.8973 9 7 0.3237 -0.0230 -4.9682 10 6 -0.4645 -1.1419 -5.0152 11 1 -0.0107 -2.1194 -5.0864 12 6 -1.8464 -1.0198 -4.9714 13 7 -2.3993 0.1715 -4.8841 14 14 -2.9216 -2.5460 -5.0363 15 1 -2.6024 -3.4256 -3.8832 16 1 -4.3508 -2.1476 -4.9750 17 1 -2.6661 -3.2779 -6.3029 18 6 2.4609 1.2355 -4.9217 19 6 2.4688 1.6266 -6.4139 20 6 2.3878 0.3141 -7.2128 21 6 2.3341 -0.8289 -6.1782 22 6 2.0400 -0.7214 1.2492 23 6 2.7419 0.1225 2.3151 24 6 3.5550 -0.8287 1.4339 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.1494 0.5389 -2.5435 29 1 1.7674 -1.9418 -3.6926 30 1 3.2823 -1.0111 -3.6108 31 1 -0.0829 0.8575 -4.9817 32 1 -3.3652 0.2570 -4.8539 33 1 3.4795 1.1691 -4.5393 34 1 1.8809 1.9537 -4.3421 35 1 1.6071 2.2549 -6.6398 36 1 3.3906 2.1552 -6.6565 37 1 1.4869 0.3053 -7.8264 38 1 3.2704 0.2056 -7.8432 39 1 1.6614 -1.6175 -6.5155 40 1 3.3323 -1.2286 -5.9992 41 1 1.4310 -1.5586 1.5901 42 1 2.8400 1.1916 2.1266 43 1 2.5946 -0.1594 3.3576 44 1 3.9424 -1.7361 1.8970 45 1 4.1884 -0.3859 0.6653 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753663196.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:30 Heat of formation + Delta-G solvation = -39.412871 kcal Electronic energy + Delta-G solvation = -23167.617943 eV Core-core repulsion = 19991.386236 eV Total energy + Delta-G solvation = -3176.231707 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.06612 -39.72275 -37.87635 -35.48960 -35.08382 -33.34218 -32.11985 -29.55420 -29.47570 -26.33791 -25.53952 -24.84480 -23.16164 -22.32555 -21.21617 -20.63105 -20.07667 -18.95863 -17.96613 -17.25635 -16.80748 -16.31479 -16.06224 -15.89557 -15.66952 -15.30501 -15.13071 -14.84859 -14.47536 -13.92044 -13.56711 -13.42609 -13.18140 -13.07310 -12.89297 -12.68749 -12.44295 -12.36139 -12.32412 -12.29539 -11.96318 -11.92047 -11.79647 -11.58448 -11.34320 -11.29538 -11.13257 -10.92904 -10.88882 -10.45898 -9.83502 -8.93405 -7.89416 -5.14323 1.44890 1.46379 1.50940 1.78345 2.35927 2.57349 3.07964 3.42318 3.63960 3.78406 3.82379 3.88091 3.94985 3.99858 4.13082 4.21442 4.32449 4.39260 4.48340 4.60019 4.62660 4.70049 4.79982 4.84552 4.87688 4.90637 4.97599 5.03239 5.04940 5.09265 5.15037 5.20825 5.21692 5.23813 5.31105 5.37762 5.42666 5.48014 5.61013 5.64311 5.73487 6.33921 6.75322 7.40822 7.42151 8.15367 8.40875 9.32724 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013287 B = 0.006113 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.803001 B = 4579.132624 C = 5943.511283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.070 4.070 3 H 0.116 0.884 4 C 0.505 3.495 5 O -0.584 6.584 6 N -0.701 5.701 7 C 0.130 3.870 8 C 0.182 3.818 9 N -0.707 5.707 10 C -0.214 4.214 11 H 0.060 0.940 12 C -0.061 4.061 13 N -0.959 5.959 14 Si 0.948 3.052 15 H -0.291 1.291 16 H -0.296 1.296 17 H -0.285 1.285 18 C -0.113 4.113 19 C -0.112 4.112 20 C -0.108 4.108 21 C -0.130 4.130 22 C -0.150 4.150 23 C -0.155 4.155 24 C -0.169 4.169 25 H 0.091 0.909 26 H 0.055 0.945 27 H 0.040 0.960 28 H 0.405 0.595 29 H 0.027 0.973 30 H 0.065 0.935 31 H 0.377 0.623 32 H 0.248 0.752 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.040 0.960 38 H 0.075 0.925 39 H 0.043 0.957 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.089 0.911 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.344 5.274 7.646 14.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.091 4.091 3 H 0.134 0.866 4 C 0.292 3.708 5 O -0.464 6.464 6 N -0.350 5.350 7 C 0.003 3.997 8 C 0.091 3.909 9 N -0.347 5.347 10 C -0.346 4.346 11 H 0.078 0.922 12 C -0.254 4.254 13 N -0.610 5.610 14 Si 0.779 3.221 15 H -0.218 1.218 16 H -0.222 1.222 17 H -0.211 1.211 18 C -0.151 4.151 19 C -0.150 4.150 20 C -0.146 4.146 21 C -0.171 4.171 22 C -0.169 4.169 23 C -0.191 4.191 24 C -0.206 4.206 25 H 0.109 0.891 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.241 0.759 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.210 0.790 32 H 0.057 0.943 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.058 0.942 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.114 0.886 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.108 0.892 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 11.763 4.414 7.689 14.731 hybrid contribution -1.587 -0.738 -0.450 1.807 sum 10.177 3.677 7.239 13.019 Atomic orbital electron populations 1.21689 0.92208 1.01927 1.03447 1.20873 0.97544 1.00341 0.90389 0.86617 1.21206 0.79599 0.84444 0.85509 1.90617 1.40370 1.27995 1.87451 1.45812 1.52360 1.31813 1.05063 1.21570 0.97214 0.95415 0.85493 1.20976 0.84075 0.94507 0.91383 1.42302 0.99736 1.05130 1.87561 1.19163 0.88126 0.87880 1.39427 0.92168 1.25157 0.97739 0.97977 1.04477 1.69739 1.09569 1.21939 1.59717 0.85605 0.78424 0.80499 0.77565 1.21772 1.22206 1.21134 1.22509 1.00507 0.94901 0.97211 1.22011 1.01679 0.97012 0.94306 1.21918 1.00728 0.94479 0.97464 1.22728 0.99849 0.98136 0.96349 1.21940 0.96014 1.02252 0.96653 1.23181 1.01982 0.97767 0.96207 1.22734 0.93459 1.01817 1.02620 0.89067 0.92569 0.94084 0.75916 0.95486 0.91699 0.78995 0.94294 0.89672 0.91688 0.93120 0.89982 0.94152 0.90645 0.93830 0.90798 0.88629 0.87403 0.87259 0.89205 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.07 71.98 0.65 -2.93 16 2 C -0.07 -1.85 2.88 -11.54 -0.03 -1.88 16 3 H 0.12 2.46 7.90 -2.39 -0.02 2.44 16 4 C 0.51 17.41 7.03 87.66 0.62 18.03 16 5 O -0.58 -23.95 15.08 -3.01 -0.05 -23.99 16 6 N -0.70 -24.14 5.15 -463.07 -2.38 -26.53 16 7 C 0.13 4.75 4.46 86.38 0.39 5.14 16 8 C 0.18 6.41 0.48 4.90 0.00 6.41 16 9 N -0.71 -31.45 4.80 -297.49 -1.43 -32.87 16 10 C -0.21 -11.08 8.62 84.03 0.72 -10.35 16 11 H 0.06 3.19 7.16 -2.91 -0.02 3.17 16 12 C -0.06 -3.32 5.50 84.86 0.47 -2.86 16 13 N -0.96 -55.05 13.06 21.65 0.28 -54.77 16 14 Si 0.95 45.94 29.55 68.60 2.03 47.97 16 15 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 16 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 17 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 18 C -0.11 -3.18 5.45 31.67 0.17 -3.01 16 19 C -0.11 -3.01 6.78 31.32 0.21 -2.80 16 20 C -0.11 -3.20 6.78 31.32 0.21 -2.99 16 21 C -0.13 -4.37 5.86 31.67 0.19 -4.18 16 22 C -0.15 -3.72 4.72 -10.79 -0.05 -3.77 16 23 C -0.15 -2.82 10.18 30.61 0.31 -2.51 16 24 C -0.17 -4.09 8.97 30.61 0.27 -3.81 16 25 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.06 1.64 7.56 -2.39 -0.02 1.62 16 27 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.41 13.48 7.53 -92.71 -0.70 12.78 16 29 H 0.03 1.18 7.50 -2.39 -0.02 1.16 16 30 H 0.06 2.22 8.13 -2.39 -0.02 2.20 16 31 H 0.38 18.01 7.71 -92.71 -0.72 17.30 16 32 H 0.25 14.13 8.31 -92.70 -0.77 13.36 16 33 H 0.08 2.06 8.04 -2.39 -0.02 2.05 16 34 H 0.06 1.82 8.09 -2.39 -0.02 1.80 16 35 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.04 1.70 7.23 -2.39 -0.02 1.68 16 40 H 0.07 2.14 8.05 -2.38 -0.02 2.12 16 41 H 0.10 2.52 8.11 -2.39 -0.02 2.50 16 42 H 0.11 1.65 8.05 -2.38 -0.02 1.63 16 43 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.08 2.10 8.10 -2.39 -0.02 2.08 16 Total: -1.00 -62.79 358.37 2.14 -60.65 By element: Atomic # 1 Polarization: 41.51 SS G_CDS: -0.45 Total: 41.07 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: 4.13 Total: -11.52 kcal Atomic # 7 Polarization: -110.64 SS G_CDS: -3.53 Total: -114.17 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.05 Total: -23.99 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -62.79 2.14 -60.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753663196.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.235 kcal (2) G-P(sol) polarization free energy of solvation -62.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds