Wall clock time and date at job start Tue Mar 31 2020 01:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 115.54853 * 2 1 4 4 C 1.52993 * 117.51872 * 145.69918 * 2 1 3 5 5 C 1.52998 * 117.50128 * 214.33276 * 2 1 3 6 6 H 1.09001 * 117.49676 * 359.97438 * 5 2 1 7 7 C 1.50689 * 117.50131 * 144.99721 * 5 2 1 8 8 O 1.21287 * 120.00262 * 359.97438 * 7 5 2 9 9 N 1.34780 * 120.00069 * 180.02562 * 7 5 2 10 10 C 1.46505 * 119.99992 * 180.27311 * 9 7 5 11 11 C 1.52998 * 109.47141 * 179.72255 * 10 9 7 12 12 C 1.52995 * 109.49846 * 299.93989 * 11 10 9 13 13 C 1.53032 * 109.49819 * 179.83526 * 11 10 9 14 14 C 1.53040 * 109.54016 * 178.68309 * 13 11 10 15 15 C 1.53195 * 109.30913 * 61.37036 * 14 13 11 16 16 N 1.46927 * 108.77619 * 305.36233 * 15 14 13 17 17 C 1.36929 * 120.63550 * 233.63118 * 16 15 14 18 18 H 1.08009 * 119.99924 * 27.67149 * 17 16 15 19 19 C 1.38813 * 120.00301 * 207.66933 * 17 16 15 20 20 N 1.31615 * 119.99702 * 17.36208 * 19 17 16 21 21 Si 1.86796 * 120.00243 * 197.35937 * 19 17 16 22 22 H 1.48505 * 109.47150 * 89.99692 * 21 19 17 23 23 H 1.48497 * 109.47583 * 209.99998 * 21 19 17 24 24 H 1.48501 * 109.47202 * 330.00296 * 21 19 17 25 25 C 1.46928 * 118.73432 * 53.61002 * 16 15 14 26 26 H 1.09001 * 109.47051 * 205.67068 * 1 2 3 27 27 H 1.09001 * 109.46922 * 325.66843 * 1 2 3 28 28 H 1.08998 * 109.47145 * 85.66703 * 1 2 3 29 29 H 1.08997 * 117.50185 * 359.97438 * 4 2 1 30 30 H 1.09000 * 117.50252 * 214.97004 * 4 2 1 31 31 H 0.96994 * 119.99841 * 359.97438 * 9 7 5 32 32 H 1.08995 * 109.46986 * 299.72755 * 10 9 7 33 33 H 1.09002 * 109.46808 * 59.72389 * 10 9 7 34 34 H 1.08997 * 109.47582 * 59.99631 * 12 11 10 35 35 H 1.09006 * 109.47374 * 180.02562 * 12 11 10 36 36 H 1.09001 * 109.47433 * 299.99856 * 12 11 10 37 37 H 1.09001 * 109.46407 * 298.70913 * 13 11 10 38 38 H 1.09007 * 109.45998 * 58.66774 * 13 11 10 39 39 H 1.09002 * 109.50203 * 301.42090 * 14 13 11 40 40 H 1.09001 * 109.50010 * 181.31982 * 14 13 11 41 41 H 1.09005 * 109.58612 * 185.57711 * 15 14 13 42 42 H 1.09000 * 109.70667 * 65.22281 * 15 14 13 43 43 H 0.97010 * 119.99764 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.58342 * 186.60161 * 25 16 15 45 45 H 1.09003 * 109.58644 * 66.17716 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2369 -1.1209 0.7646 5 6 2.2365 -1.1207 -0.7654 6 1 1.6113 -1.8582 -1.2686 7 6 3.5290 -0.7804 -1.4615 8 8 3.9711 0.3474 -1.4022 9 7 4.1932 -1.7292 -2.1508 10 6 5.4528 -1.3999 -2.8226 11 6 5.9996 -2.6467 -3.5207 12 6 6.2479 -3.7446 -2.4846 13 6 7.3133 -2.3023 -4.2261 14 6 7.8780 -3.5565 -4.8972 15 6 6.8831 -4.0606 -5.9474 16 7 5.5762 -4.2563 -5.3052 17 6 4.9232 -5.4558 -5.4034 18 1 5.4862 -6.3679 -5.5367 19 6 3.5376 -5.4998 -5.3315 20 7 2.8341 -4.4022 -5.5123 21 14 2.6714 -7.1166 -4.9781 22 1 2.5048 -7.2787 -3.5113 23 1 1.3376 -7.1168 -5.6308 24 1 3.4834 -8.2400 -5.5110 25 6 4.9834 -3.1404 -4.5553 26 1 -0.3633 -0.9262 0.4452 27 1 -0.3633 0.8486 0.5796 28 1 -0.3633 0.0776 -1.0247 29 1 1.6120 -1.8584 1.2683 30 1 3.1721 -0.8750 1.2677 31 1 3.8394 -2.6311 -2.1986 32 1 5.2771 -0.6176 -3.5609 33 1 6.1761 -1.0489 -2.0865 34 1 5.3115 -3.9902 -1.9837 35 1 6.6379 -4.6325 -2.9823 36 1 6.9719 -3.3933 -1.7492 37 1 7.1307 -1.5375 -4.9809 38 1 8.0303 -1.9274 -3.4956 39 1 8.0377 -4.3304 -4.1464 40 1 8.8254 -3.3159 -5.3795 41 1 7.2338 -5.0074 -6.3582 42 1 6.7906 -3.3268 -6.7481 43 1 1.8658 -4.4330 -5.4624 44 1 4.0806 -3.4801 -4.0476 45 1 4.7366 -2.3297 -5.2409 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754729332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:42 Heat of formation + Delta-G solvation = -9.336673 kcal Electronic energy + Delta-G solvation = -23175.358516 eV Core-core repulsion = 20000.431011 eV Total energy + Delta-G solvation = -3174.927505 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.88706 -38.54246 -36.65900 -34.68042 -33.18788 -31.36973 -29.90722 -28.83241 -26.62848 -25.89471 -25.31243 -23.36565 -22.13938 -20.89815 -20.41090 -19.74098 -18.01323 -17.17439 -16.64471 -15.67144 -15.15258 -14.89833 -14.38051 -14.12730 -13.94194 -13.79812 -13.42878 -13.26420 -13.16101 -12.78575 -12.67542 -12.30324 -12.20074 -12.01481 -11.63922 -11.43675 -11.31760 -10.98295 -10.87937 -10.67176 -10.40811 -10.35735 -10.18631 -10.10589 -10.08018 -9.84514 -9.68786 -9.43570 -9.38113 -8.65459 -8.50828 -6.69654 -5.83062 -3.24970 2.75069 3.32439 3.40917 3.41558 3.47110 3.86908 4.44851 4.73308 4.77587 4.85863 5.13147 5.26378 5.28040 5.30894 5.44963 5.51026 5.57969 5.61553 5.65917 5.69496 5.78013 5.91546 5.97723 6.00013 6.05217 6.10453 6.17299 6.26782 6.28073 6.41092 6.43500 6.54261 6.62999 6.78443 6.83966 6.89466 6.96528 7.03978 7.28329 7.56714 7.75211 7.88924 8.39859 8.54981 9.16940 9.80430 10.37969 11.24757 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014026 B = 0.005873 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.768637 B = 4766.697821 C = 6248.389857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 H 0.115 0.885 4 C -0.151 4.151 5 C -0.189 4.189 6 H 0.125 0.875 7 C 0.541 3.459 8 O -0.555 6.555 9 N -0.712 5.712 10 C 0.136 3.864 11 C -0.103 4.103 12 C -0.125 4.125 13 C -0.095 4.095 14 C -0.135 4.135 15 C 0.143 3.857 16 N -0.589 5.589 17 C -0.249 4.249 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.898 3.102 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.185 3.815 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.407 0.593 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.044 0.956 35 H 0.071 0.929 36 H 0.035 0.965 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.016 0.984 43 H 0.253 0.747 44 H 0.089 0.911 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.124 4.843 9.595 10.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 H 0.133 0.867 4 C -0.188 4.188 5 C -0.210 4.210 6 H 0.142 0.858 7 C 0.327 3.673 8 O -0.434 6.434 9 N -0.363 5.363 10 C 0.012 3.988 11 C -0.105 4.105 12 C -0.183 4.183 13 C -0.133 4.133 14 C -0.174 4.174 15 C 0.017 3.983 16 N -0.311 5.311 17 C -0.379 4.379 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.728 3.272 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.205 1.205 25 C 0.059 3.941 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.115 0.885 31 H 0.243 0.757 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.034 0.966 43 H 0.063 0.937 44 H 0.107 0.893 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 1.271 5.621 9.581 11.181 hybrid contribution -0.671 -1.304 -0.010 1.466 sum 0.600 4.318 9.572 10.517 Atomic orbital electron populations 1.21398 0.92404 1.01976 1.02274 1.22335 0.95075 0.95042 1.01737 0.86653 1.23069 1.02964 1.01537 0.91246 1.22339 0.98113 1.05073 0.95502 0.85754 1.19587 0.84529 0.84703 0.78452 1.90646 1.68989 1.21191 1.62611 1.46010 1.24423 1.13772 1.52073 1.21367 0.84398 0.97541 0.95451 1.21534 0.97886 0.93709 0.97364 1.21716 1.00183 0.99227 0.97141 1.21345 0.95575 0.97770 0.98635 1.22044 0.98062 0.97527 0.99762 1.20930 0.86704 0.98025 0.92665 1.43994 1.18092 1.11618 1.57405 1.19191 0.88733 0.84920 1.45011 0.91698 1.25006 0.96694 0.96747 1.01147 1.70046 1.05421 1.26694 1.52466 0.86348 0.79060 0.83707 0.78049 1.21476 1.21819 1.20463 1.20802 0.93561 0.89199 0.90545 0.92397 0.91905 0.91840 0.87963 0.88475 0.75696 0.91941 0.92439 0.93649 0.90997 0.94583 0.92579 0.93423 0.91956 0.93213 0.92965 0.96561 0.93678 0.89321 0.96469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 10.19 37.16 0.38 -0.81 16 2 C -0.12 -1.47 5.92 -90.62 -0.54 -2.01 16 3 H 0.12 1.53 7.67 -51.92 -0.40 1.13 16 4 C -0.15 -1.68 9.88 -26.73 -0.26 -1.94 16 5 C -0.19 -2.55 5.91 -91.78 -0.54 -3.09 16 6 H 0.12 1.58 8.14 -51.93 -0.42 1.16 16 7 C 0.54 9.09 7.61 -10.99 -0.08 9.00 16 8 O -0.56 -10.93 16.26 5.55 0.09 -10.84 16 9 N -0.71 -11.86 5.00 -60.29 -0.30 -12.16 16 10 C 0.14 2.33 4.57 -4.04 -0.02 2.31 16 11 C -0.10 -1.82 0.53 -154.39 -0.08 -1.91 16 12 C -0.13 -2.14 7.81 37.16 0.29 -1.85 16 13 C -0.10 -1.56 4.71 -26.69 -0.13 -1.69 16 14 C -0.13 -2.26 5.74 -26.61 -0.15 -2.41 16 15 C 0.14 2.91 6.52 -3.71 -0.02 2.88 16 16 N -0.59 -13.95 2.43 -172.31 -0.42 -14.37 16 17 C -0.25 -6.50 9.58 -15.06 -0.14 -6.64 16 18 H 0.07 1.69 7.89 -52.48 -0.41 1.27 16 19 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 20 N -0.90 -24.91 11.19 55.49 0.62 -24.29 16 21 Si 0.90 20.84 29.59 -169.99 -5.03 15.81 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 25 C 0.19 4.12 3.73 -3.71 -0.01 4.10 16 26 H 0.06 0.50 7.90 -51.93 -0.41 0.09 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.10 0.94 8.05 -51.93 -0.42 0.52 16 30 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.41 6.73 6.22 -40.82 -0.25 6.48 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.04 0.77 6.87 -51.93 -0.36 0.42 16 35 H 0.07 1.35 5.97 -51.93 -0.31 1.04 16 36 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 1.05 6.34 -51.93 -0.33 0.73 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 44 H 0.09 2.14 4.94 -51.93 -0.26 1.89 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 349.18 15.07 5.26 5.26 Total: -1.00 -29.27 349.18 -8.95 -38.22 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -7.77 Total: 6.44 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -1.40 Total: -4.06 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.10 Total: -50.83 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.27 -8.95 -38.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754729332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.879 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds