Wall clock time and date at job start Tue Mar 31 2020 01:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 115.54853 * 2 1 4 4 C 1.52993 * 117.51872 * 145.69918 * 2 1 3 5 5 C 1.52998 * 117.50128 * 214.33276 * 2 1 3 6 6 H 1.09001 * 117.49676 * 359.97438 * 5 2 1 7 7 C 1.50689 * 117.50131 * 144.99721 * 5 2 1 8 8 O 1.21287 * 120.00262 * 359.97438 * 7 5 2 9 9 N 1.34780 * 120.00069 * 180.02562 * 7 5 2 10 10 C 1.46505 * 119.99992 * 180.27311 * 9 7 5 11 11 C 1.52998 * 109.47141 * 179.72255 * 10 9 7 12 12 C 1.52995 * 109.49846 * 299.93989 * 11 10 9 13 13 C 1.53032 * 109.49819 * 179.83526 * 11 10 9 14 14 C 1.53040 * 109.54016 * 178.68309 * 13 11 10 15 15 C 1.53195 * 109.30913 * 61.37036 * 14 13 11 16 16 N 1.46927 * 108.77619 * 305.36233 * 15 14 13 17 17 C 1.36929 * 120.63550 * 233.63118 * 16 15 14 18 18 H 1.08009 * 119.99924 * 27.67149 * 17 16 15 19 19 C 1.38813 * 120.00301 * 207.66933 * 17 16 15 20 20 N 1.31615 * 119.99702 * 17.36208 * 19 17 16 21 21 Si 1.86796 * 120.00243 * 197.35937 * 19 17 16 22 22 H 1.48505 * 109.47150 * 89.99692 * 21 19 17 23 23 H 1.48497 * 109.47583 * 209.99998 * 21 19 17 24 24 H 1.48501 * 109.47202 * 330.00296 * 21 19 17 25 25 C 1.46928 * 118.73432 * 53.61002 * 16 15 14 26 26 H 1.09001 * 109.47051 * 205.67068 * 1 2 3 27 27 H 1.09001 * 109.46922 * 325.66843 * 1 2 3 28 28 H 1.08998 * 109.47145 * 85.66703 * 1 2 3 29 29 H 1.08997 * 117.50185 * 359.97438 * 4 2 1 30 30 H 1.09000 * 117.50252 * 214.97004 * 4 2 1 31 31 H 0.96994 * 119.99841 * 359.97438 * 9 7 5 32 32 H 1.08995 * 109.46986 * 299.72755 * 10 9 7 33 33 H 1.09002 * 109.46808 * 59.72389 * 10 9 7 34 34 H 1.08997 * 109.47582 * 59.99631 * 12 11 10 35 35 H 1.09006 * 109.47374 * 180.02562 * 12 11 10 36 36 H 1.09001 * 109.47433 * 299.99856 * 12 11 10 37 37 H 1.09001 * 109.46407 * 298.70913 * 13 11 10 38 38 H 1.09007 * 109.45998 * 58.66774 * 13 11 10 39 39 H 1.09002 * 109.50203 * 301.42090 * 14 13 11 40 40 H 1.09001 * 109.50010 * 181.31982 * 14 13 11 41 41 H 1.09005 * 109.58612 * 185.57711 * 15 14 13 42 42 H 1.09000 * 109.70667 * 65.22281 * 15 14 13 43 43 H 0.97010 * 119.99764 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.58342 * 186.60161 * 25 16 15 45 45 H 1.09003 * 109.58644 * 66.17716 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2369 -1.1209 0.7646 5 6 2.2365 -1.1207 -0.7654 6 1 1.6113 -1.8582 -1.2686 7 6 3.5290 -0.7804 -1.4615 8 8 3.9711 0.3474 -1.4022 9 7 4.1932 -1.7292 -2.1508 10 6 5.4528 -1.3999 -2.8226 11 6 5.9996 -2.6467 -3.5207 12 6 6.2479 -3.7446 -2.4846 13 6 7.3133 -2.3023 -4.2261 14 6 7.8780 -3.5565 -4.8972 15 6 6.8831 -4.0606 -5.9474 16 7 5.5762 -4.2563 -5.3052 17 6 4.9232 -5.4558 -5.4034 18 1 5.4862 -6.3679 -5.5367 19 6 3.5376 -5.4998 -5.3315 20 7 2.8341 -4.4022 -5.5123 21 14 2.6714 -7.1166 -4.9781 22 1 2.5048 -7.2787 -3.5113 23 1 1.3376 -7.1168 -5.6308 24 1 3.4834 -8.2400 -5.5110 25 6 4.9834 -3.1404 -4.5553 26 1 -0.3633 -0.9262 0.4452 27 1 -0.3633 0.8486 0.5796 28 1 -0.3633 0.0776 -1.0247 29 1 1.6120 -1.8584 1.2683 30 1 3.1721 -0.8750 1.2677 31 1 3.8394 -2.6311 -2.1986 32 1 5.2771 -0.6176 -3.5609 33 1 6.1761 -1.0489 -2.0865 34 1 5.3115 -3.9902 -1.9837 35 1 6.6379 -4.6325 -2.9823 36 1 6.9719 -3.3933 -1.7492 37 1 7.1307 -1.5375 -4.9809 38 1 8.0303 -1.9274 -3.4956 39 1 8.0377 -4.3304 -4.1464 40 1 8.8254 -3.3159 -5.3795 41 1 7.2338 -5.0074 -6.3582 42 1 6.7906 -3.3268 -6.7481 43 1 1.8658 -4.4330 -5.4624 44 1 4.0806 -3.4801 -4.0476 45 1 4.7366 -2.3297 -5.2409 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754729332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:41 Heat of formation + Delta-G solvation = -25.417738 kcal Electronic energy + Delta-G solvation = -23176.055843 eV Core-core repulsion = 20000.431011 eV Total energy + Delta-G solvation = -3175.624832 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.21479 -40.00124 -37.78545 -36.25377 -34.88528 -32.97503 -31.63199 -29.71938 -28.02615 -27.47334 -27.03071 -24.60694 -23.78987 -22.14560 -21.68144 -20.99039 -19.56448 -18.54754 -18.35114 -17.06840 -16.77751 -16.31436 -15.91551 -15.46299 -15.41522 -15.19886 -14.90175 -14.76861 -14.31048 -14.16265 -13.81353 -13.75827 -13.68225 -13.12804 -13.00820 -12.91833 -12.72404 -12.58595 -12.32792 -12.27007 -12.14226 -11.85012 -11.73342 -11.41579 -11.36257 -11.22134 -11.06978 -10.97584 -10.75500 -10.50533 -10.04478 -8.62693 -7.83198 -5.28060 1.48001 1.49042 1.50306 1.57960 2.21964 2.53394 2.84920 3.29029 3.59734 3.71945 3.77974 3.88236 3.94925 4.03622 4.03834 4.22890 4.36237 4.41052 4.51203 4.54876 4.69020 4.73855 4.76909 4.80207 4.85590 4.92974 4.99068 5.03579 5.05322 5.10979 5.17075 5.19087 5.29599 5.32529 5.40128 5.41823 5.47631 5.53425 5.63520 5.72806 5.78283 6.42269 6.53709 7.18669 7.21067 7.89669 8.42471 9.22108 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014026 B = 0.005873 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.768637 B = 4766.697821 C = 6248.389857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.123 4.123 3 H 0.098 0.902 4 C -0.130 4.130 5 C -0.209 4.209 6 H 0.131 0.869 7 C 0.537 3.463 8 O -0.589 6.589 9 N -0.712 5.712 10 C 0.142 3.858 11 C -0.091 4.091 12 C -0.118 4.118 13 C -0.095 4.095 14 C -0.123 4.123 15 C 0.136 3.864 16 N -0.604 5.604 17 C -0.256 4.256 18 H 0.064 0.936 19 C -0.044 4.044 20 N -0.931 5.931 21 Si 0.959 3.041 22 H -0.281 1.281 23 H -0.300 1.300 24 H -0.273 1.273 25 C 0.197 3.803 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.129 0.871 30 H 0.094 0.906 31 H 0.407 0.593 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.006 0.994 43 H 0.249 0.751 44 H 0.066 0.934 45 H -0.021 1.021 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.787 4.195 11.401 12.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 H 0.116 0.884 4 C -0.167 4.167 5 C -0.230 4.230 6 H 0.149 0.851 7 C 0.325 3.675 8 O -0.471 6.471 9 N -0.362 5.362 10 C 0.018 3.982 11 C -0.093 4.093 12 C -0.175 4.175 13 C -0.133 4.133 14 C -0.161 4.161 15 C 0.010 3.990 16 N -0.327 5.327 17 C -0.387 4.387 18 H 0.082 0.918 19 C -0.240 4.240 20 N -0.578 5.578 21 Si 0.787 3.213 22 H -0.207 1.207 23 H -0.227 1.227 24 H -0.198 1.198 25 C 0.071 3.929 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.147 0.853 30 H 0.113 0.887 31 H 0.244 0.756 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.024 0.976 43 H 0.058 0.942 44 H 0.085 0.915 45 H -0.003 1.003 Dipole moment (debyes) X Y Z Total from point charges 1.964 4.960 11.389 12.577 hybrid contribution -0.845 -1.076 -0.651 1.515 sum 1.119 3.884 10.738 11.474 Atomic orbital electron populations 1.21410 0.90471 1.03448 1.02357 1.22408 0.96492 0.94076 1.01168 0.88379 1.23194 1.03031 1.01247 0.89210 1.22347 0.96853 1.06686 0.97079 0.85143 1.20164 0.85294 0.84053 0.77991 1.90620 1.70141 1.22407 1.63909 1.46053 1.24396 1.13847 1.51888 1.21276 0.84969 0.96647 0.95335 1.21340 0.97376 0.94152 0.96406 1.21627 1.00623 0.98130 0.97100 1.21377 0.95236 0.97586 0.99113 1.21918 0.98024 0.97476 0.98726 1.21107 0.86235 0.97997 0.93627 1.44240 1.19072 1.11230 1.58177 1.19460 0.89131 0.85882 1.44180 0.91806 1.25654 0.97285 0.99451 1.01566 1.70199 1.05183 1.28485 1.53906 0.85399 0.77445 0.80480 0.77934 1.20728 1.22652 1.19840 1.20557 0.94255 0.87586 0.90509 0.90938 0.90426 0.92465 0.85259 0.88715 0.75646 0.93640 0.91036 0.94123 0.92477 0.91901 0.93178 0.90340 0.91619 0.90178 0.92982 0.97589 0.94207 0.91530 1.00291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.08 10.19 71.98 0.73 -1.35 16 2 C -0.12 -2.79 5.92 -10.80 -0.06 -2.86 16 3 H 0.10 2.59 7.67 -2.38 -0.02 2.57 16 4 C -0.13 -2.63 9.88 30.59 0.30 -2.33 16 5 C -0.21 -5.49 5.91 -11.54 -0.07 -5.56 16 6 H 0.13 3.25 8.14 -2.39 -0.02 3.23 16 7 C 0.54 18.13 7.61 87.65 0.67 18.80 16 8 O -0.59 -23.48 16.26 -3.05 -0.05 -23.53 16 9 N -0.71 -23.85 5.00 -463.06 -2.31 -26.17 16 10 C 0.14 4.80 4.57 86.38 0.39 5.20 16 11 C -0.09 -3.16 0.53 -52.11 -0.03 -3.19 16 12 C -0.12 -3.81 7.81 71.98 0.56 -3.25 16 13 C -0.10 -2.93 4.71 30.62 0.14 -2.79 16 14 C -0.12 -3.83 5.74 30.67 0.18 -3.65 16 15 C 0.14 5.47 6.52 86.36 0.56 6.03 16 16 N -0.60 -28.98 2.43 -699.06 -1.70 -30.68 16 17 C -0.26 -13.49 9.58 84.04 0.81 -12.68 16 18 H 0.06 3.31 7.89 -2.91 -0.02 3.29 16 19 C -0.04 -2.35 4.91 84.86 0.42 -1.93 16 20 N -0.93 -52.84 11.19 21.65 0.24 -52.59 16 21 Si 0.96 43.08 29.59 68.60 2.03 45.11 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 25 C 0.20 8.98 3.73 86.36 0.32 9.30 16 26 H 0.07 1.05 7.90 -2.39 -0.02 1.03 16 27 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.13 1.94 8.05 -2.39 -0.02 1.92 16 30 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.41 13.64 6.22 -92.71 -0.58 13.07 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.04 1.34 6.87 -2.39 -0.02 1.32 16 35 H 0.06 2.04 5.97 -2.38 -0.01 2.02 16 36 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 39 H 0.07 2.04 6.34 -2.39 -0.02 2.03 16 40 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.05 2.05 7.93 -2.38 -0.02 2.04 16 42 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.25 13.75 8.31 -92.70 -0.77 12.98 16 44 H 0.07 3.32 4.94 -2.38 -0.01 3.31 16 45 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 Total: -1.00 -64.17 349.18 3.52 -60.65 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: 0.38 Total: 27.48 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 4.93 Total: -0.26 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -3.77 Total: -109.44 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.05 Total: -23.53 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -64.17 3.52 -60.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754729332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.232 kcal (2) G-P(sol) polarization free energy of solvation -64.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds