Wall clock time and date at job start Tue Mar 31 2020 02:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47414 * 2 1 4 4 C 1.53004 * 109.46972 * 120.00012 * 2 1 3 5 5 C 1.53002 * 109.46780 * 185.00110 * 4 2 1 6 6 C 1.53005 * 117.49394 * 243.61960 * 5 4 2 7 7 C 1.53002 * 60.00282 * 252.51610 * 6 5 4 8 8 N 1.46497 * 109.47276 * 239.99976 * 2 1 3 9 9 C 1.34780 * 120.00070 * 85.00118 * 8 2 1 10 10 O 1.21593 * 119.99529 * 0.02562 * 9 8 2 11 11 N 1.34773 * 120.00175 * 179.97438 * 9 8 2 12 12 C 1.46500 * 119.99894 * 179.97438 * 11 9 8 13 13 H 1.09002 * 110.01868 * 325.70649 * 12 11 9 14 14 C 1.53873 * 110.03147 * 87.09634 * 12 11 9 15 15 C 1.54269 * 106.59646 * 119.33268 * 14 12 11 16 16 C 1.54882 * 104.19831 * 23.61137 * 15 14 12 17 17 H 1.08994 * 110.75597 * 80.55637 * 16 15 14 18 18 C 1.50702 * 110.75854 * 203.74430 * 16 15 14 19 19 H 1.08003 * 120.00527 * 118.54176 * 18 16 15 20 20 C 1.37878 * 119.99656 * 298.54724 * 18 16 15 21 21 N 1.31514 * 120.00160 * 359.97438 * 20 18 16 22 22 Si 1.86805 * 119.99758 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47200 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46832 * 119.99800 * 22 20 18 25 25 H 1.48498 * 109.47104 * 239.99860 * 22 20 18 26 26 C 1.54273 * 110.07287 * 204.28551 * 12 11 9 27 27 H 1.09006 * 109.47270 * 59.99894 * 1 2 3 28 28 H 1.08998 * 109.47181 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47471 * 300.00054 * 1 2 3 30 30 H 1.09005 * 109.47020 * 305.00239 * 4 2 1 31 31 H 1.08997 * 109.46888 * 65.00525 * 4 2 1 32 32 H 1.08998 * 115.55443 * 29.33480 * 5 4 2 33 33 H 1.08995 * 117.50424 * 0.02562 * 6 5 4 34 34 H 1.09005 * 117.49616 * 145.02747 * 6 5 4 35 35 H 1.08998 * 117.50052 * 252.51746 * 7 6 5 36 36 H 1.09000 * 117.50078 * 107.48941 * 7 6 5 37 37 H 0.96997 * 120.00527 * 264.99904 * 8 2 1 38 38 H 0.97002 * 120.00266 * 0.02562 * 11 9 8 39 39 H 1.08996 * 110.03511 * 238.61506 * 14 12 11 40 40 H 1.09002 * 110.03347 * 0.04582 * 14 12 11 41 41 H 1.09000 * 110.48429 * 142.29450 * 15 14 12 42 42 H 1.09001 * 110.48672 * 264.92943 * 15 14 12 43 43 H 0.97004 * 120.00181 * 179.97438 * 21 20 18 44 44 H 1.09001 * 110.48533 * 335.76640 * 26 12 11 45 45 H 1.08999 * 110.48202 * 98.40568 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.3694 -1.9113 1.2205 7 6 4.2607 -1.1729 2.5561 8 7 2.0183 -0.6906 -1.1961 9 6 2.1471 -0.0182 -2.3571 10 8 1.8583 1.1617 -2.4115 11 7 2.5968 -0.6534 -3.4574 12 6 2.7362 0.0773 -4.7195 13 1 1.9503 0.8278 -4.8049 14 6 4.1180 0.7510 -4.7887 15 6 4.8365 0.1574 -6.0180 16 6 3.6855 -0.3391 -6.9277 17 1 3.2561 0.4878 -7.4934 18 6 4.1681 -1.4243 -7.8553 19 1 3.7334 -2.4117 -7.8038 20 6 5.1647 -1.1568 -8.7698 21 7 5.6939 0.0456 -8.8328 22 14 5.7634 -2.5022 -9.9191 23 1 5.0121 -3.7543 -9.6493 24 1 5.5408 -2.0857 -11.3271 25 1 7.2127 -2.7359 -9.6952 26 6 2.6634 -0.9020 -5.9092 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.6052 -0.2618 2.1370 31 1 1.7516 -1.7715 1.2055 32 1 3.9927 0.2786 0.8559 33 1 3.8126 -2.8421 1.1129 34 1 5.3270 -1.8736 0.7011 35 1 5.1466 -0.6494 2.9154 36 1 3.6322 -1.6180 3.3275 37 1 2.2490 -1.6317 -1.1526 38 1 2.8275 -1.5946 -3.4139 39 1 4.0027 1.8282 -4.9077 40 1 4.6851 0.5335 -3.8836 41 1 5.4204 0.9250 -6.5260 42 1 5.4748 -0.6750 -5.7218 43 1 6.3953 0.2337 -9.4759 44 1 2.9507 -1.9056 -5.5954 45 1 1.6612 -0.9076 -6.3379 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454502207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:16 Heat of formation + Delta-G solvation = -33.354485 kcal Electronic energy + Delta-G solvation = -22149.681840 eV Core-core repulsion = 18973.712844 eV Total energy + Delta-G solvation = -3175.968996 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.97133 -38.19465 -37.09103 -35.20331 -33.58459 -32.12831 -30.73477 -28.09834 -27.67096 -26.76789 -23.86386 -22.64755 -22.06638 -20.77946 -20.60789 -19.60218 -19.12158 -17.96263 -16.71570 -16.21682 -15.49939 -15.32487 -14.74683 -14.58554 -14.34020 -14.11470 -13.95316 -13.33665 -12.96145 -12.71988 -12.59758 -12.28535 -12.15966 -11.77048 -11.71636 -11.42504 -11.22286 -11.05059 -10.94206 -10.89297 -10.52908 -10.41554 -10.28091 -10.19067 -9.91448 -9.72061 -9.47642 -9.19284 -9.02236 -8.76549 -8.41068 -8.33116 -5.99058 -4.02520 2.97531 3.29911 3.38250 3.41340 3.52621 3.55257 4.27685 4.44057 4.52141 4.59806 4.71467 4.87906 5.08774 5.18937 5.32388 5.33265 5.38432 5.47357 5.54976 5.60269 5.62694 5.69569 5.74817 5.86420 5.90845 5.91352 6.05986 6.14708 6.38877 6.44285 6.63753 6.67039 6.73231 6.80612 6.95327 7.03912 7.17929 7.32866 7.44532 7.75205 7.91848 8.05395 8.33375 8.45069 8.93434 8.99846 9.61545 11.09981 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024502 B = 0.003312 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.488467 B = 8451.070786 C = 8974.779829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.164 3.836 3 H 0.087 0.913 4 C -0.096 4.096 5 C -0.149 4.149 6 C -0.179 4.179 7 C -0.184 4.184 8 N -0.744 5.744 9 C 0.701 3.299 10 O -0.597 6.597 11 N -0.734 5.734 12 C 0.157 3.843 13 H 0.078 0.922 14 C -0.135 4.135 15 C -0.100 4.100 16 C 0.051 3.949 17 H 0.032 0.968 18 C -0.513 4.513 19 H 0.055 0.945 20 C 0.062 3.938 21 N -0.888 5.888 22 Si 0.889 3.111 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.285 1.285 26 C -0.120 4.120 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.392 0.608 38 H 0.392 0.608 39 H 0.054 0.946 40 H 0.048 0.952 41 H 0.068 0.932 42 H 0.045 0.955 43 H 0.259 0.741 44 H 0.060 0.940 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.001 -3.666 20.818 21.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.058 3.942 3 H 0.105 0.895 4 C -0.134 4.134 5 C -0.167 4.167 6 C -0.216 4.216 7 C -0.221 4.221 8 N -0.400 5.400 9 C 0.401 3.599 10 O -0.475 6.475 11 N -0.388 5.388 12 C 0.052 3.948 13 H 0.096 0.904 14 C -0.174 4.174 15 C -0.138 4.138 16 C 0.032 3.968 17 H 0.050 0.950 18 C -0.552 4.552 19 H 0.074 0.926 20 C -0.140 4.140 21 N -0.526 5.526 22 Si 0.717 3.283 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.159 4.159 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.123 0.877 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.226 0.774 38 H 0.225 0.775 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.141 -2.445 20.656 21.688 hybrid contribution 0.740 -1.613 -0.584 1.868 sum -5.401 -4.058 20.072 21.179 Atomic orbital electron populations 1.22210 0.95715 1.01858 1.02540 1.20725 0.93361 0.97286 0.82787 0.89467 1.21513 0.93150 1.01073 0.97625 1.22316 0.94121 0.98242 1.02000 1.23027 1.02259 0.95802 1.00552 1.22962 1.02999 1.04633 0.91494 1.45192 1.72393 1.13430 1.08965 1.16054 0.78248 0.85184 0.80409 1.90891 1.57645 1.14411 1.84565 1.45538 1.70177 1.13571 1.09515 1.21709 0.97837 0.94276 0.80930 0.90367 1.22662 0.95637 0.99456 0.99597 1.22296 0.98856 0.99515 0.93119 1.19553 0.90298 0.95576 0.91362 0.94982 1.21138 1.19591 0.96776 1.17649 0.92644 1.24982 0.96514 0.95323 0.97134 1.69975 1.26763 1.19812 1.36073 0.86593 0.78541 0.82303 0.80870 1.19856 1.21101 1.21125 1.22752 1.00367 0.97670 0.95066 0.91776 0.92752 0.91952 0.90065 0.91339 0.87681 0.88894 0.88867 0.88985 0.88961 0.77450 0.77472 0.92714 0.93318 0.91331 0.93623 0.93148 0.92176 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.48 37.15 0.35 -1.22 16 2 C 0.16 1.65 2.53 -67.93 -0.17 1.48 16 3 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 4 C -0.10 -0.71 5.03 -26.73 -0.13 -0.84 16 5 C -0.15 -1.24 5.48 -90.61 -0.50 -1.73 16 6 C -0.18 -1.41 10.18 -26.73 -0.27 -1.68 16 7 C -0.18 -1.35 10.25 -26.72 -0.27 -1.62 16 8 N -0.74 -8.43 4.81 -58.67 -0.28 -8.71 16 9 C 0.70 11.07 8.52 -86.92 -0.74 10.33 16 10 O -0.60 -11.86 15.67 5.28 0.08 -11.77 16 11 N -0.73 -11.37 4.99 -57.58 -0.29 -11.66 16 12 C 0.16 2.92 3.23 -66.81 -0.22 2.71 16 13 H 0.08 1.56 7.59 -51.93 -0.39 1.17 16 14 C -0.13 -2.70 6.59 -25.61 -0.17 -2.87 16 15 C -0.10 -2.32 5.57 -25.07 -0.14 -2.46 16 16 C 0.05 1.24 2.82 -89.78 -0.25 0.99 16 17 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 18 C -0.51 -13.81 8.54 -34.44 -0.29 -14.10 16 19 H 0.06 1.47 7.78 -52.48 -0.41 1.06 16 20 C 0.06 1.71 5.33 -17.82 -0.10 1.61 16 21 N -0.89 -25.36 12.02 55.43 0.67 -24.69 16 22 Si 0.89 21.06 29.54 -169.99 -5.02 16.03 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 C -0.12 -2.40 5.94 -25.07 -0.15 -2.55 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.45 7.87 -51.93 -0.41 0.04 16 32 H 0.11 1.05 8.07 -51.93 -0.42 0.64 16 33 H 0.09 0.65 8.03 -51.93 -0.42 0.23 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.39 3.53 8.62 -40.82 -0.35 3.18 16 38 H 0.39 5.10 8.37 -40.82 -0.34 4.76 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.05 0.94 7.92 -51.93 -0.41 0.53 16 41 H 0.07 1.75 7.37 -51.93 -0.38 1.37 16 42 H 0.04 1.09 8.04 -51.93 -0.42 0.67 16 43 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.06 1.15 7.63 -51.93 -0.40 0.75 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 362.46 15.07 5.46 5.46 Total: -1.00 -30.59 362.46 -10.54 -41.13 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -8.10 Total: 6.17 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: -3.05 Total: -11.96 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.10 Total: -45.06 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.08 Total: -11.77 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.59 -10.54 -41.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454502207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.771 kcal (2) G-P(sol) polarization free energy of solvation -30.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds