Wall clock time and date at job start Tue Mar 31 2020 02:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47414 * 2 1 4 4 C 1.53004 * 109.46972 * 120.00012 * 2 1 3 5 5 C 1.53002 * 109.46780 * 185.00110 * 4 2 1 6 6 C 1.53005 * 117.49394 * 243.61960 * 5 4 2 7 7 C 1.53002 * 60.00282 * 252.51610 * 6 5 4 8 8 N 1.46497 * 109.47276 * 239.99976 * 2 1 3 9 9 C 1.34780 * 120.00070 * 85.00118 * 8 2 1 10 10 O 1.21593 * 119.99529 * 0.02562 * 9 8 2 11 11 N 1.34773 * 120.00175 * 179.97438 * 9 8 2 12 12 C 1.46500 * 119.99894 * 179.97438 * 11 9 8 13 13 H 1.09002 * 110.01868 * 325.70649 * 12 11 9 14 14 C 1.53873 * 110.03147 * 87.09634 * 12 11 9 15 15 C 1.54269 * 106.59646 * 119.33268 * 14 12 11 16 16 C 1.54882 * 104.19831 * 23.61137 * 15 14 12 17 17 H 1.08994 * 110.75597 * 80.55637 * 16 15 14 18 18 C 1.50702 * 110.75854 * 203.74430 * 16 15 14 19 19 H 1.08003 * 120.00527 * 118.54176 * 18 16 15 20 20 C 1.37878 * 119.99656 * 298.54724 * 18 16 15 21 21 N 1.31514 * 120.00160 * 359.97438 * 20 18 16 22 22 Si 1.86805 * 119.99758 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47200 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46832 * 119.99800 * 22 20 18 25 25 H 1.48498 * 109.47104 * 239.99860 * 22 20 18 26 26 C 1.54273 * 110.07287 * 204.28551 * 12 11 9 27 27 H 1.09006 * 109.47270 * 59.99894 * 1 2 3 28 28 H 1.08998 * 109.47181 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47471 * 300.00054 * 1 2 3 30 30 H 1.09005 * 109.47020 * 305.00239 * 4 2 1 31 31 H 1.08997 * 109.46888 * 65.00525 * 4 2 1 32 32 H 1.08998 * 115.55443 * 29.33480 * 5 4 2 33 33 H 1.08995 * 117.50424 * 0.02562 * 6 5 4 34 34 H 1.09005 * 117.49616 * 145.02747 * 6 5 4 35 35 H 1.08998 * 117.50052 * 252.51746 * 7 6 5 36 36 H 1.09000 * 117.50078 * 107.48941 * 7 6 5 37 37 H 0.96997 * 120.00527 * 264.99904 * 8 2 1 38 38 H 0.97002 * 120.00266 * 0.02562 * 11 9 8 39 39 H 1.08996 * 110.03511 * 238.61506 * 14 12 11 40 40 H 1.09002 * 110.03347 * 0.04582 * 14 12 11 41 41 H 1.09000 * 110.48429 * 142.29450 * 15 14 12 42 42 H 1.09001 * 110.48672 * 264.92943 * 15 14 12 43 43 H 0.97004 * 120.00181 * 179.97438 * 21 20 18 44 44 H 1.09001 * 110.48533 * 335.76640 * 26 12 11 45 45 H 1.08999 * 110.48202 * 98.40568 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.3694 -1.9113 1.2205 7 6 4.2607 -1.1729 2.5561 8 7 2.0183 -0.6906 -1.1961 9 6 2.1471 -0.0182 -2.3571 10 8 1.8583 1.1617 -2.4115 11 7 2.5968 -0.6534 -3.4574 12 6 2.7362 0.0773 -4.7195 13 1 1.9503 0.8278 -4.8049 14 6 4.1180 0.7510 -4.7887 15 6 4.8365 0.1574 -6.0180 16 6 3.6855 -0.3391 -6.9277 17 1 3.2561 0.4878 -7.4934 18 6 4.1681 -1.4243 -7.8553 19 1 3.7334 -2.4117 -7.8038 20 6 5.1647 -1.1568 -8.7698 21 7 5.6939 0.0456 -8.8328 22 14 5.7634 -2.5022 -9.9191 23 1 5.0121 -3.7543 -9.6493 24 1 5.5408 -2.0857 -11.3271 25 1 7.2127 -2.7359 -9.6952 26 6 2.6634 -0.9020 -5.9092 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.6052 -0.2618 2.1370 31 1 1.7516 -1.7715 1.2055 32 1 3.9927 0.2786 0.8559 33 1 3.8126 -2.8421 1.1129 34 1 5.3270 -1.8736 0.7011 35 1 5.1466 -0.6494 2.9154 36 1 3.6322 -1.6180 3.3275 37 1 2.2490 -1.6317 -1.1526 38 1 2.8275 -1.5946 -3.4139 39 1 4.0027 1.8282 -4.9077 40 1 4.6851 0.5335 -3.8836 41 1 5.4204 0.9250 -6.5260 42 1 5.4748 -0.6750 -5.7218 43 1 6.3953 0.2337 -9.4759 44 1 2.9507 -1.9056 -5.5954 45 1 1.6612 -0.9076 -6.3379 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454502207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:14 Heat of formation + Delta-G solvation = -51.232463 kcal Electronic energy + Delta-G solvation = -22150.457087 eV Core-core repulsion = 18973.712844 eV Total energy + Delta-G solvation = -3176.744243 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -41.20526 -39.23536 -38.40365 -36.18921 -35.23891 -33.87680 -31.86066 -29.92727 -28.45965 -28.33832 -25.78498 -23.32040 -23.01577 -21.77483 -21.43554 -21.24364 -20.82861 -19.22025 -18.47930 -17.40850 -16.81383 -16.56288 -16.24578 -15.86440 -15.65675 -15.27547 -15.16276 -14.50678 -14.15643 -13.97573 -13.72623 -13.62731 -13.43205 -13.01421 -12.88318 -12.79966 -12.55651 -12.35632 -12.31880 -12.10684 -12.09014 -11.90758 -11.65240 -11.37391 -11.19597 -11.06169 -11.03944 -10.78733 -10.74870 -10.45162 -10.21561 -9.65334 -8.08170 -6.18665 1.42906 1.45057 1.55949 1.83047 2.26596 2.46314 2.94868 3.22621 3.40795 3.62773 3.95083 3.97275 4.07196 4.12014 4.20048 4.23531 4.35736 4.49532 4.60717 4.70865 4.79252 4.82141 4.83912 4.94059 4.95468 4.97858 5.05496 5.08319 5.09819 5.12548 5.18040 5.30904 5.33012 5.37164 5.42064 5.44221 5.68288 5.70702 5.75427 5.95486 6.01720 6.14946 6.39165 6.92139 7.22798 7.49130 7.71360 9.00408 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024502 B = 0.003312 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.488467 B = 8451.070786 C = 8974.779829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.161 3.839 3 H 0.059 0.941 4 C -0.083 4.083 5 C -0.160 4.160 6 C -0.182 4.182 7 C -0.176 4.176 8 N -0.724 5.724 9 C 0.699 3.301 10 O -0.640 6.640 11 N -0.726 5.726 12 C 0.171 3.829 13 H 0.066 0.934 14 C -0.123 4.123 15 C -0.088 4.088 16 C 0.040 3.960 17 H -0.001 1.001 18 C -0.527 4.527 19 H 0.060 0.940 20 C 0.009 3.991 21 N -0.921 5.921 22 Si 0.954 3.046 23 H -0.263 1.263 24 H -0.285 1.285 25 H -0.283 1.283 26 C -0.105 4.105 27 H 0.032 0.968 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.408 0.592 38 H 0.407 0.593 39 H 0.047 0.953 40 H 0.058 0.942 41 H 0.036 0.964 42 H 0.038 0.962 43 H 0.259 0.741 44 H 0.075 0.925 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.727 -6.111 22.690 24.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.056 3.944 3 H 0.078 0.922 4 C -0.120 4.120 5 C -0.178 4.178 6 C -0.219 4.219 7 C -0.213 4.213 8 N -0.380 5.380 9 C 0.399 3.601 10 O -0.522 6.522 11 N -0.381 5.381 12 C 0.065 3.935 13 H 0.084 0.916 14 C -0.163 4.163 15 C -0.126 4.126 16 C 0.021 3.979 17 H 0.018 0.982 18 C -0.565 4.565 19 H 0.078 0.922 20 C -0.189 4.189 21 N -0.560 5.560 22 Si 0.780 3.220 23 H -0.187 1.187 24 H -0.211 1.211 25 H -0.209 1.209 26 C -0.143 4.143 27 H 0.051 0.949 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.126 0.874 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.126 0.874 37 H 0.244 0.756 38 H 0.244 0.756 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.068 0.932 44 H 0.093 0.907 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.873 -4.949 22.572 24.108 hybrid contribution 0.971 -0.809 -1.133 1.698 sum -5.902 -5.758 21.438 22.969 Atomic orbital electron populations 1.22156 0.94914 1.02720 1.01970 1.20851 0.93930 0.96288 0.83295 0.92229 1.21442 0.92256 1.01886 0.96436 1.22249 0.94805 0.97666 1.03066 1.23090 1.01889 0.96062 1.00850 1.23033 1.02889 1.03925 0.91465 1.45066 1.71081 1.14021 1.07870 1.16202 0.77945 0.84730 0.81266 1.90869 1.59429 1.16531 1.85330 1.45220 1.70262 1.14106 1.08478 1.21283 0.96285 0.93831 0.82073 0.91572 1.22533 0.96374 0.98987 0.98358 1.22064 0.98269 0.98295 0.94013 1.19537 0.91850 0.94413 0.92127 0.98244 1.21513 1.19498 0.97393 1.18081 0.92216 1.25795 0.96870 0.97412 0.98832 1.70117 1.27313 1.21716 1.36860 0.85558 0.77979 0.79868 0.78546 1.18674 1.21085 1.20878 1.22546 0.99382 0.98251 0.94114 0.94920 0.91087 0.89993 0.88413 0.89402 0.90099 0.87428 0.89897 0.89190 0.87378 0.75610 0.75645 0.93444 0.92282 0.94464 0.94348 0.93249 0.90693 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.48 71.98 0.68 -2.05 16 2 C 0.16 3.01 2.53 44.99 0.11 3.12 16 3 H 0.06 1.47 7.58 -2.38 -0.02 1.46 16 4 C -0.08 -0.98 5.03 30.60 0.15 -0.83 16 5 C -0.16 -2.37 5.48 -10.79 -0.06 -2.43 16 6 C -0.18 -2.45 10.18 30.60 0.31 -2.14 16 7 C -0.18 -2.18 10.25 30.60 0.31 -1.86 16 8 N -0.72 -15.14 4.81 -457.80 -2.20 -17.34 16 9 C 0.70 21.42 8.52 179.05 1.53 22.94 16 10 O -0.64 -25.59 15.67 -4.01 -0.06 -25.66 16 11 N -0.73 -21.38 4.99 -454.33 -2.27 -23.65 16 12 C 0.17 6.30 3.23 45.72 0.15 6.44 16 13 H 0.07 2.65 7.59 -2.39 -0.02 2.63 16 14 C -0.12 -5.00 6.59 31.32 0.21 -4.79 16 15 C -0.09 -4.20 5.57 31.67 0.18 -4.02 16 16 C 0.04 1.97 2.82 -10.25 -0.03 1.94 16 17 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 18 C -0.53 -28.38 8.54 25.60 0.22 -28.16 16 19 H 0.06 3.10 7.78 -2.91 -0.02 3.07 16 20 C 0.01 0.52 5.33 84.65 0.45 0.97 16 21 N -0.92 -53.78 12.02 21.45 0.26 -53.53 16 22 Si 0.95 43.17 29.54 68.60 2.03 45.20 16 23 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 C -0.10 -4.08 5.94 31.67 0.19 -3.90 16 27 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.09 0.76 7.87 -2.39 -0.02 0.75 16 32 H 0.08 1.61 8.07 -2.39 -0.02 1.59 16 33 H 0.11 1.13 8.03 -2.39 -0.02 1.11 16 34 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.41 6.13 8.62 -92.71 -0.80 5.33 16 38 H 0.41 9.55 8.37 -92.71 -0.78 8.78 16 39 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.06 2.25 7.92 -2.39 -0.02 2.23 16 41 H 0.04 1.98 7.37 -2.39 -0.02 1.96 16 42 H 0.04 1.85 8.04 -2.39 -0.02 1.83 16 43 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 44 H 0.07 2.70 7.63 -2.39 -0.02 2.68 16 45 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -67.63 362.46 1.55 -66.08 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: -0.61 Total: 23.64 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 4.40 Total: -14.75 kcal Atomic # 7 Polarization: -90.30 SS G_CDS: -4.21 Total: -94.52 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.06 Total: -25.66 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -67.63 1.55 -66.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454502207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.851 kcal (2) G-P(sol) polarization free energy of solvation -67.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds