Wall clock time and date at job start Tue Mar 31 2020 02:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46274 * 2 1 4 4 C 1.52995 * 109.47252 * 240.00127 * 2 1 3 5 5 C 1.52999 * 109.46892 * 174.99648 * 4 2 1 6 6 C 1.53007 * 117.49837 * 243.62121 * 5 4 2 7 7 C 1.52998 * 59.99980 * 252.51315 * 6 5 4 8 8 N 1.46499 * 109.47193 * 119.99903 * 2 1 3 9 9 C 1.34774 * 119.99966 * 275.00429 * 8 2 1 10 10 O 1.21592 * 120.00301 * 0.02562 * 9 8 2 11 11 N 1.34777 * 119.99902 * 179.97438 * 9 8 2 12 12 C 1.46506 * 119.99873 * 179.97438 * 11 9 8 13 13 H 1.08996 * 110.01703 * 325.70727 * 12 11 9 14 14 C 1.53873 * 110.03099 * 87.09834 * 12 11 9 15 15 C 1.54266 * 106.60230 * 119.28123 * 14 12 11 16 16 C 1.54893 * 104.19210 * 23.61017 * 15 14 12 17 17 H 1.09003 * 110.75665 * 80.55820 * 16 15 14 18 18 C 1.50697 * 110.75512 * 203.74366 * 16 15 14 19 19 H 1.07997 * 120.00419 * 118.54733 * 18 16 15 20 20 C 1.37876 * 119.99666 * 298.54712 * 18 16 15 21 21 N 1.31518 * 120.00554 * 359.97438 * 20 18 16 22 22 Si 1.86809 * 119.99890 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46807 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47117 * 119.99704 * 22 20 18 25 25 H 1.48498 * 109.46967 * 239.99678 * 22 20 18 26 26 C 1.54266 * 110.02948 * 204.31183 * 12 11 9 27 27 H 1.09007 * 109.46656 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47271 * 299.99530 * 1 2 3 29 29 H 1.08996 * 109.46932 * 60.00177 * 1 2 3 30 30 H 1.08995 * 109.47361 * 295.00125 * 4 2 1 31 31 H 1.09002 * 109.46976 * 54.99651 * 4 2 1 32 32 H 1.08991 * 115.55053 * 29.33235 * 5 4 2 33 33 H 1.08998 * 117.49809 * 0.02562 * 6 5 4 34 34 H 1.08999 * 117.49779 * 145.02438 * 6 5 4 35 35 H 1.09007 * 117.50032 * 252.51026 * 7 6 5 36 36 H 1.08997 * 117.51829 * 107.48264 * 7 6 5 37 37 H 0.96999 * 119.99984 * 94.99902 * 8 2 1 38 38 H 0.96995 * 120.00018 * 0.27633 * 11 9 8 39 39 H 1.09001 * 110.03016 * 238.56820 * 14 12 11 40 40 H 1.09006 * 110.03037 * 359.97438 * 14 12 11 41 41 H 1.08998 * 110.48168 * 142.28826 * 15 14 12 42 42 H 1.08999 * 110.48878 * 264.93044 * 15 14 12 43 43 H 0.96996 * 120.00510 * 180.02562 * 21 20 18 44 44 H 1.08996 * 110.48751 * 335.78584 * 26 12 11 45 45 H 1.08998 * 110.48379 * 98.43362 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 6 4.1698 0.1516 -2.4928 7 6 4.2803 -1.3732 -2.4322 8 7 2.0184 -0.6906 1.1962 9 6 2.1471 -0.0182 2.3571 10 8 1.8574 1.1614 2.4119 11 7 2.5958 -0.6537 3.4577 12 6 2.7362 0.0773 4.7196 13 1 3.0355 1.1068 4.5230 14 6 1.4063 0.0535 5.4932 15 6 1.6895 -0.6530 6.8350 16 6 3.2116 -0.4629 7.0504 17 1 3.4243 0.5286 7.4502 18 6 3.7598 -1.5320 7.9600 19 1 4.5161 -2.2130 7.5985 20 6 3.2958 -1.6409 9.2538 21 7 2.3752 -0.8114 9.6943 22 14 3.9749 -2.9666 10.3812 23 1 4.9931 -3.7635 9.6509 24 1 4.6017 -2.3330 11.5691 25 1 2.8702 -3.8567 10.8200 26 6 3.7822 -0.6149 5.6177 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.7518 -1.7714 -1.2056 31 1 1.6054 -0.2617 -2.1369 32 1 4.0719 -0.5385 -0.3517 33 1 3.4813 0.5780 -3.2224 34 1 5.0749 0.7296 -2.3067 35 1 5.2583 -1.7984 -2.2063 36 1 3.6648 -1.9506 -3.1220 37 1 2.2491 -1.6317 1.1526 38 1 2.8300 -1.5939 3.4132 39 1 1.0607 1.0715 5.6729 40 1 0.6564 -0.5015 4.9296 41 1 1.1281 -0.1803 7.6409 42 1 1.4432 -1.7126 6.7677 43 1 2.0491 -0.8877 10.6046 44 1 3.8743 -1.6684 5.3537 45 1 4.7468 -0.1142 5.5353 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454502209.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:21 Heat of formation + Delta-G solvation = -33.064964 kcal Electronic energy + Delta-G solvation = -22017.505158 eV Core-core repulsion = 18841.548717 eV Total energy + Delta-G solvation = -3175.956441 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.98898 -38.20552 -37.10674 -35.24497 -33.59413 -32.12852 -30.71826 -28.10073 -27.69363 -26.77525 -23.86310 -22.68283 -22.08733 -20.88504 -20.47949 -19.61043 -19.13466 -18.04043 -16.66592 -16.05360 -15.83187 -15.17010 -14.87279 -14.63592 -14.43523 -14.09161 -13.86380 -13.28516 -13.00486 -12.63478 -12.60900 -12.29444 -12.15669 -11.80319 -11.71726 -11.44751 -11.28150 -11.07665 -10.95782 -10.87688 -10.53401 -10.46110 -10.28511 -10.15780 -9.91984 -9.74265 -9.48034 -9.19522 -9.04766 -8.76914 -8.41931 -8.33617 -5.99300 -4.02804 2.95314 3.29751 3.38102 3.41157 3.50349 3.52814 4.26648 4.43979 4.52187 4.57872 4.66631 4.89942 5.02530 5.20671 5.31040 5.32953 5.35507 5.48258 5.53088 5.59143 5.60818 5.67936 5.74208 5.83047 5.90324 5.95580 6.03449 6.16456 6.38343 6.43428 6.62783 6.65554 6.72627 6.80093 6.94617 7.02982 7.16376 7.32370 7.43825 7.74953 7.91530 8.05091 8.31615 8.44764 8.91731 8.99599 9.61298 11.09768 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028781 B = 0.003092 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.638107 B = 9053.117284 C = 9591.012245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.164 3.836 3 H 0.088 0.912 4 C -0.095 4.095 5 C -0.152 4.152 6 C -0.181 4.181 7 C -0.183 4.183 8 N -0.746 5.746 9 C 0.701 3.299 10 O -0.595 6.595 11 N -0.735 5.735 12 C 0.157 3.843 13 H 0.078 0.922 14 C -0.135 4.135 15 C -0.100 4.100 16 C 0.051 3.949 17 H 0.032 0.968 18 C -0.513 4.513 19 H 0.055 0.945 20 C 0.062 3.938 21 N -0.888 5.888 22 Si 0.889 3.111 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.285 1.285 26 C -0.121 4.121 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.393 0.607 38 H 0.392 0.608 39 H 0.054 0.946 40 H 0.048 0.952 41 H 0.068 0.932 42 H 0.045 0.955 43 H 0.259 0.741 44 H 0.060 0.940 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.544 -1.801 -22.489 22.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.058 3.942 3 H 0.106 0.894 4 C -0.133 4.133 5 C -0.170 4.170 6 C -0.218 4.218 7 C -0.220 4.220 8 N -0.403 5.403 9 C 0.401 3.599 10 O -0.473 6.473 11 N -0.388 5.388 12 C 0.052 3.948 13 H 0.096 0.904 14 C -0.173 4.173 15 C -0.138 4.138 16 C 0.032 3.968 17 H 0.050 0.950 18 C -0.551 4.551 19 H 0.074 0.926 20 C -0.140 4.140 21 N -0.526 5.526 22 Si 0.717 3.283 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.159 4.159 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.226 0.774 38 H 0.225 0.775 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.917 -0.637 -22.267 22.295 hybrid contribution 0.486 -1.657 0.634 1.840 sum -0.431 -2.294 -21.632 21.758 Atomic orbital electron populations 1.22212 0.95654 1.01925 1.02552 1.20697 0.93417 0.97366 0.82675 0.89394 1.21503 0.93018 1.01100 0.97705 1.22353 0.95128 1.04967 0.94573 1.23030 1.03217 0.94352 1.01188 1.22962 1.02178 0.94553 1.02284 1.45246 1.72487 1.13429 1.09106 1.16059 0.78373 0.85205 0.80304 1.90894 1.57220 1.14525 1.84708 1.45553 1.70242 1.13618 1.09414 1.21715 0.96549 0.95740 0.80755 0.90362 1.22662 0.95930 1.00503 0.98255 1.22299 1.00040 0.98305 0.93164 1.19570 0.91172 0.97229 0.88814 0.94982 1.21135 1.22204 1.15357 0.96453 0.92641 1.24982 0.95025 0.95938 0.98008 1.69972 1.28997 1.36901 1.16773 0.86594 0.78864 0.81979 0.80875 1.19850 1.21095 1.21124 1.22766 0.96289 0.98975 0.97845 0.92694 0.91715 0.91998 0.91048 0.90364 0.87460 0.88833 0.88961 0.88934 0.88915 0.77399 0.77453 0.92695 0.93304 0.91311 0.93604 0.93136 0.92169 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.48 37.16 0.35 -1.27 16 2 C 0.16 1.66 2.56 -67.93 -0.17 1.49 16 3 H 0.09 1.10 7.58 -51.93 -0.39 0.70 16 4 C -0.10 -0.70 5.03 -26.73 -0.13 -0.84 16 5 C -0.15 -1.23 5.61 -90.62 -0.51 -1.74 16 6 C -0.18 -1.37 10.18 -26.73 -0.27 -1.64 16 7 C -0.18 -1.30 10.25 -26.73 -0.27 -1.57 16 8 N -0.75 -8.40 4.51 -58.68 -0.26 -8.67 16 9 C 0.70 11.02 8.52 -86.92 -0.74 10.28 16 10 O -0.60 -11.82 15.67 5.28 0.08 -11.74 16 11 N -0.73 -11.31 4.99 -57.58 -0.29 -11.60 16 12 C 0.16 2.92 3.23 -66.81 -0.22 2.70 16 13 H 0.08 1.56 7.59 -51.93 -0.39 1.16 16 14 C -0.13 -2.70 6.59 -25.61 -0.17 -2.87 16 15 C -0.10 -2.32 5.57 -25.07 -0.14 -2.46 16 16 C 0.05 1.24 2.82 -89.74 -0.25 0.99 16 17 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 18 C -0.51 -13.80 8.54 -34.44 -0.29 -14.09 16 19 H 0.06 1.47 7.78 -52.49 -0.41 1.06 16 20 C 0.06 1.71 5.33 -17.82 -0.10 1.61 16 21 N -0.89 -25.37 12.02 55.43 0.67 -24.70 16 22 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 C -0.12 -2.40 5.95 -25.03 -0.15 -2.54 16 27 H 0.05 0.49 8.14 -51.92 -0.42 0.06 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.51 7.88 -51.93 -0.41 0.10 16 32 H 0.11 1.03 7.69 -51.93 -0.40 0.64 16 33 H 0.09 0.63 8.03 -51.93 -0.42 0.21 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.64 8.14 -51.92 -0.42 0.21 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.39 3.43 8.62 -40.82 -0.35 3.08 16 38 H 0.39 5.05 8.36 -40.82 -0.34 4.71 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.05 0.94 7.92 -51.93 -0.41 0.53 16 41 H 0.07 1.76 7.37 -51.93 -0.38 1.38 16 42 H 0.05 1.09 8.04 -51.93 -0.42 0.67 16 43 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.06 1.14 7.63 -51.93 -0.40 0.75 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 361.94 15.07 5.45 5.45 Total: -1.00 -30.65 361.94 -10.52 -41.17 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -8.08 Total: 6.00 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -3.07 Total: -11.96 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.11 Total: -44.96 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.08 Total: -11.74 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.65 -10.52 -41.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454502209.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.105 kcal (2) G-P(sol) polarization free energy of solvation -30.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds