Wall clock time and date at job start Tue Mar 31 2020 02:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46274 * 2 1 4 4 C 1.52995 * 109.47252 * 240.00127 * 2 1 3 5 5 C 1.52999 * 109.46892 * 174.99648 * 4 2 1 6 6 C 1.53007 * 117.49837 * 243.62121 * 5 4 2 7 7 C 1.52998 * 59.99980 * 252.51315 * 6 5 4 8 8 N 1.46499 * 109.47193 * 119.99903 * 2 1 3 9 9 C 1.34774 * 119.99966 * 275.00429 * 8 2 1 10 10 O 1.21592 * 120.00301 * 0.02562 * 9 8 2 11 11 N 1.34777 * 119.99902 * 179.97438 * 9 8 2 12 12 C 1.46506 * 119.99873 * 179.97438 * 11 9 8 13 13 H 1.08996 * 110.01703 * 325.70727 * 12 11 9 14 14 C 1.53873 * 110.03099 * 87.09834 * 12 11 9 15 15 C 1.54266 * 106.60230 * 119.28123 * 14 12 11 16 16 C 1.54893 * 104.19210 * 23.61017 * 15 14 12 17 17 H 1.09003 * 110.75665 * 80.55820 * 16 15 14 18 18 C 1.50697 * 110.75512 * 203.74366 * 16 15 14 19 19 H 1.07997 * 120.00419 * 118.54733 * 18 16 15 20 20 C 1.37876 * 119.99666 * 298.54712 * 18 16 15 21 21 N 1.31518 * 120.00554 * 359.97438 * 20 18 16 22 22 Si 1.86809 * 119.99890 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46807 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47117 * 119.99704 * 22 20 18 25 25 H 1.48498 * 109.46967 * 239.99678 * 22 20 18 26 26 C 1.54266 * 110.02948 * 204.31183 * 12 11 9 27 27 H 1.09007 * 109.46656 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47271 * 299.99530 * 1 2 3 29 29 H 1.08996 * 109.46932 * 60.00177 * 1 2 3 30 30 H 1.08995 * 109.47361 * 295.00125 * 4 2 1 31 31 H 1.09002 * 109.46976 * 54.99651 * 4 2 1 32 32 H 1.08991 * 115.55053 * 29.33235 * 5 4 2 33 33 H 1.08998 * 117.49809 * 0.02562 * 6 5 4 34 34 H 1.08999 * 117.49779 * 145.02438 * 6 5 4 35 35 H 1.09007 * 117.50032 * 252.51026 * 7 6 5 36 36 H 1.08997 * 117.51829 * 107.48264 * 7 6 5 37 37 H 0.96999 * 119.99984 * 94.99902 * 8 2 1 38 38 H 0.96995 * 120.00018 * 0.27633 * 11 9 8 39 39 H 1.09001 * 110.03016 * 238.56820 * 14 12 11 40 40 H 1.09006 * 110.03037 * 359.97438 * 14 12 11 41 41 H 1.08998 * 110.48168 * 142.28826 * 15 14 12 42 42 H 1.08999 * 110.48878 * 264.93044 * 15 14 12 43 43 H 0.96996 * 120.00510 * 180.02562 * 21 20 18 44 44 H 1.08996 * 110.48751 * 335.78584 * 26 12 11 45 45 H 1.08998 * 110.48379 * 98.43362 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 6 4.1698 0.1516 -2.4928 7 6 4.2803 -1.3732 -2.4322 8 7 2.0184 -0.6906 1.1962 9 6 2.1471 -0.0182 2.3571 10 8 1.8574 1.1614 2.4119 11 7 2.5958 -0.6537 3.4577 12 6 2.7362 0.0773 4.7196 13 1 3.0355 1.1068 4.5230 14 6 1.4063 0.0535 5.4932 15 6 1.6895 -0.6530 6.8350 16 6 3.2116 -0.4629 7.0504 17 1 3.4243 0.5286 7.4502 18 6 3.7598 -1.5320 7.9600 19 1 4.5161 -2.2130 7.5985 20 6 3.2958 -1.6409 9.2538 21 7 2.3752 -0.8114 9.6943 22 14 3.9749 -2.9666 10.3812 23 1 4.9931 -3.7635 9.6509 24 1 4.6017 -2.3330 11.5691 25 1 2.8702 -3.8567 10.8200 26 6 3.7822 -0.6149 5.6177 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.7518 -1.7714 -1.2056 31 1 1.6054 -0.2617 -2.1369 32 1 4.0719 -0.5385 -0.3517 33 1 3.4813 0.5780 -3.2224 34 1 5.0749 0.7296 -2.3067 35 1 5.2583 -1.7984 -2.2063 36 1 3.6648 -1.9506 -3.1220 37 1 2.2491 -1.6317 1.1526 38 1 2.8300 -1.5939 3.4132 39 1 1.0607 1.0715 5.6729 40 1 0.6564 -0.5015 4.9296 41 1 1.1281 -0.1803 7.6409 42 1 1.4432 -1.7126 6.7677 43 1 2.0491 -0.8877 10.6046 44 1 3.8743 -1.6684 5.3537 45 1 4.7468 -0.1142 5.5353 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454502209.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:19 Heat of formation + Delta-G solvation = -50.868675 kcal Electronic energy + Delta-G solvation = -22018.277184 eV Core-core repulsion = 18841.548717 eV Total energy + Delta-G solvation = -3176.728468 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.21940 -39.23176 -38.40486 -36.23164 -35.24553 -33.87840 -31.84332 -29.92551 -28.46153 -28.37082 -25.78415 -23.27930 -23.08353 -21.85645 -21.34603 -21.20502 -20.83083 -19.29693 -18.47812 -17.37361 -16.65567 -16.52939 -16.39551 -16.04854 -15.65781 -15.31950 -15.14115 -14.49042 -14.11730 -13.97454 -13.73737 -13.60841 -13.34253 -13.02694 -12.91465 -12.80080 -12.56027 -12.35444 -12.33808 -12.10881 -12.10025 -11.98751 -11.65332 -11.37394 -11.20512 -11.07419 -11.00987 -10.78755 -10.73524 -10.45270 -10.23820 -9.66534 -8.08351 -6.18852 1.42752 1.44919 1.55796 1.81483 2.25158 2.46142 2.94294 3.22432 3.38963 3.65727 3.94759 3.96866 4.07011 4.08894 4.23082 4.23933 4.30715 4.48523 4.64135 4.70840 4.79244 4.82481 4.84782 4.85854 4.94282 4.97080 5.05335 5.08782 5.09305 5.15816 5.17646 5.30050 5.32856 5.36701 5.42347 5.43791 5.68231 5.69308 5.74748 5.95400 6.01629 6.13849 6.39020 6.92002 7.21640 7.48963 7.70097 9.00282 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028781 B = 0.003092 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.638107 B = 9053.117284 C = 9591.012245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.162 3.838 3 H 0.061 0.939 4 C -0.083 4.083 5 C -0.163 4.163 6 C -0.188 4.188 7 C -0.172 4.172 8 N -0.727 5.727 9 C 0.699 3.301 10 O -0.639 6.639 11 N -0.726 5.726 12 C 0.171 3.829 13 H 0.066 0.934 14 C -0.123 4.123 15 C -0.088 4.088 16 C 0.039 3.961 17 H -0.001 1.001 18 C -0.526 4.526 19 H 0.060 0.940 20 C 0.009 3.991 21 N -0.921 5.921 22 Si 0.954 3.046 23 H -0.263 1.263 24 H -0.285 1.285 25 H -0.283 1.283 26 C -0.105 4.105 27 H 0.069 0.931 28 H 0.030 0.970 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.409 0.591 38 H 0.408 0.592 39 H 0.047 0.953 40 H 0.059 0.941 41 H 0.037 0.963 42 H 0.038 0.962 43 H 0.259 0.741 44 H 0.075 0.925 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.164 -3.848 -24.669 24.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.057 3.943 3 H 0.079 0.921 4 C -0.120 4.120 5 C -0.181 4.181 6 C -0.225 4.225 7 C -0.209 4.209 8 N -0.383 5.383 9 C 0.398 3.602 10 O -0.520 6.520 11 N -0.381 5.381 12 C 0.065 3.935 13 H 0.084 0.916 14 C -0.162 4.162 15 C -0.127 4.127 16 C 0.021 3.979 17 H 0.017 0.983 18 C -0.565 4.565 19 H 0.078 0.922 20 C -0.189 4.189 21 N -0.560 5.560 22 Si 0.780 3.220 23 H -0.187 1.187 24 H -0.211 1.211 25 H -0.209 1.209 26 C -0.143 4.143 27 H 0.088 0.912 28 H 0.050 0.950 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.122 0.878 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.125 0.875 37 H 0.245 0.755 38 H 0.244 0.756 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.068 0.932 44 H 0.093 0.907 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.521 -2.740 -24.495 24.653 hybrid contribution 0.371 -0.979 1.282 1.655 sum -0.150 -3.719 -23.213 23.509 Atomic orbital electron populations 1.22165 0.95127 1.02667 1.01903 1.20804 0.93766 0.96434 0.83259 0.92063 1.21430 0.92354 1.01804 0.96431 1.22304 0.95567 1.06149 0.94088 1.23115 1.03254 0.94963 1.01194 1.23021 1.02206 0.94204 1.01498 1.45113 1.71160 1.14061 1.07990 1.16203 0.78047 0.84740 0.81165 1.90872 1.59031 1.16645 1.85481 1.45231 1.70336 1.14172 1.08338 1.21288 0.95044 0.95394 0.81761 0.91597 1.22530 0.97168 0.99750 0.96783 1.22069 0.98984 0.97724 0.93908 1.19556 0.92226 0.94953 0.91208 0.98255 1.21509 1.22122 1.15717 0.97115 0.92228 1.25794 0.95366 0.98071 0.99678 1.70114 1.30265 1.38582 1.17076 0.85561 0.78332 0.79318 0.78758 1.18677 1.21078 1.20871 1.22560 0.96637 1.00131 0.94991 0.91175 0.95041 0.90008 0.89282 0.88764 0.89313 0.87842 0.89589 0.88910 0.87502 0.75491 0.75606 0.93416 0.92189 0.94432 0.94298 0.93232 0.90682 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.48 71.98 0.68 -2.19 16 2 C 0.16 3.04 2.56 44.99 0.12 3.16 16 3 H 0.06 1.51 7.58 -2.39 -0.02 1.49 16 4 C -0.08 -0.98 5.03 30.59 0.15 -0.82 16 5 C -0.16 -2.31 5.61 -10.79 -0.06 -2.37 16 6 C -0.19 -2.51 10.18 30.60 0.31 -2.20 16 7 C -0.17 -2.00 10.25 30.59 0.31 -1.69 16 8 N -0.73 -15.12 4.51 -457.81 -2.07 -17.18 16 9 C 0.70 21.33 8.52 179.06 1.53 22.86 16 10 O -0.64 -25.51 15.67 -4.01 -0.06 -25.57 16 11 N -0.73 -21.28 4.99 -454.34 -2.27 -23.55 16 12 C 0.17 6.27 3.23 45.71 0.15 6.42 16 13 H 0.07 2.63 7.59 -2.39 -0.02 2.61 16 14 C -0.12 -4.97 6.59 31.32 0.21 -4.76 16 15 C -0.09 -4.21 5.57 31.67 0.18 -4.03 16 16 C 0.04 1.96 2.82 -10.22 -0.03 1.93 16 17 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 18 C -0.53 -28.35 8.54 25.60 0.22 -28.13 16 19 H 0.06 3.09 7.78 -2.91 -0.02 3.07 16 20 C 0.01 0.52 5.33 84.65 0.45 0.97 16 21 N -0.92 -53.80 12.02 21.45 0.26 -53.54 16 22 Si 0.95 43.16 29.54 68.60 2.03 45.19 16 23 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 25 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 26 C -0.11 -4.09 5.95 31.70 0.19 -3.90 16 27 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 0.88 7.88 -2.39 -0.02 0.86 16 32 H 0.09 1.60 7.69 -2.39 -0.02 1.59 16 33 H 0.10 1.16 8.03 -2.39 -0.02 1.14 16 34 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.11 0.95 8.14 -2.39 -0.02 0.94 16 37 H 0.41 6.01 8.62 -92.71 -0.80 5.21 16 38 H 0.41 9.47 8.36 -92.71 -0.78 8.70 16 39 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.06 2.27 7.92 -2.38 -0.02 2.25 16 41 H 0.04 1.99 7.37 -2.39 -0.02 1.97 16 42 H 0.04 1.86 8.04 -2.39 -0.02 1.84 16 43 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 44 H 0.07 2.70 7.63 -2.39 -0.02 2.68 16 45 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -67.63 361.94 1.68 -65.95 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: -0.61 Total: 23.48 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: 4.40 Total: -14.77 kcal Atomic # 7 Polarization: -90.19 SS G_CDS: -4.08 Total: -94.27 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.06 Total: -25.57 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -67.63 1.68 -65.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454502209.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.077 kcal (2) G-P(sol) polarization free energy of solvation -67.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds