Wall clock time and date at job start Tue Mar 31 2020 02:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.51575 * 135.78043 * 2 1 4 4 C 1.53838 * 86.75735 * 154.86798 * 3 2 1 5 5 C 1.53007 * 113.65280 * 270.22082 * 4 3 2 6 6 C 1.50696 * 113.66472 * 139.26977 * 4 3 2 7 7 O 1.21282 * 119.99627 * 359.97438 * 6 4 3 8 8 N 1.34774 * 120.00466 * 179.97438 * 6 4 3 9 9 C 1.46502 * 120.00144 * 179.97438 * 8 6 4 10 10 H 1.08994 * 109.46893 * 35.00037 * 9 8 6 11 11 C 1.53000 * 109.46861 * 275.00142 * 9 8 6 12 12 C 1.53001 * 109.46798 * 155.00412 * 9 8 6 13 13 C 1.53000 * 109.46886 * 294.99603 * 12 9 8 14 14 C 1.52997 * 109.47060 * 180.02562 * 13 12 9 15 15 N 1.46500 * 109.47473 * 180.02562 * 14 13 12 16 16 C 1.36939 * 120.00037 * 179.97438 * 15 14 13 17 17 H 1.07993 * 120.00126 * 0.02562 * 16 15 14 18 18 C 1.38817 * 119.99653 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99966 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99758 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46920 * 90.00220 * 20 18 16 22 22 H 1.48494 * 109.47145 * 210.00039 * 20 18 16 23 23 H 1.48493 * 109.47253 * 330.00674 * 20 18 16 24 24 C 1.51579 * 135.78103 * 180.02562 * 2 1 3 25 25 H 1.07998 * 120.00039 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.99990 * 180.02562 * 1 2 3 27 27 H 1.08996 * 113.66899 * 40.39549 * 3 2 1 28 28 H 1.09009 * 113.66373 * 269.33031 * 3 2 1 29 29 H 1.09004 * 109.46841 * 298.33280 * 5 4 3 30 30 H 1.08993 * 109.47158 * 58.33217 * 5 4 3 31 31 H 1.08998 * 109.46951 * 178.33200 * 5 4 3 32 32 H 0.97001 * 119.99794 * 0.02562 * 8 6 4 33 33 H 1.09002 * 109.46818 * 180.02562 * 11 9 8 34 34 H 1.09004 * 109.47242 * 299.99688 * 11 9 8 35 35 H 1.09000 * 109.47237 * 60.00028 * 11 9 8 36 36 H 1.09001 * 109.46652 * 174.99948 * 12 9 8 37 37 H 1.08992 * 109.47514 * 55.00037 * 12 9 8 38 38 H 1.09002 * 109.47398 * 300.00496 * 13 12 9 39 39 H 1.09001 * 109.47194 * 60.00677 * 13 12 9 40 40 H 1.09002 * 109.47153 * 300.00319 * 14 13 12 41 41 H 1.08998 * 109.47533 * 59.99948 * 14 13 12 42 42 H 0.97004 * 119.99396 * 0.02562 * 15 14 13 43 43 H 0.97001 * 119.99359 * 179.97438 * 19 18 16 44 44 H 1.09006 * 113.66184 * 90.67152 * 24 2 1 45 45 H 1.08994 * 113.67052 * 319.59958 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3963 1.0571 0.0000 4 6 3.3037 -0.0001 0.6523 5 6 3.2466 0.0010 2.1813 6 6 4.7130 -0.0001 0.1186 7 8 5.0339 0.7878 -0.7458 8 7 5.6167 -0.8754 0.6017 9 6 6.9866 -0.8757 0.0824 10 1 7.2857 0.1455 -0.1538 11 6 7.0518 -1.7321 -1.1838 12 6 7.9319 -1.4530 1.1378 13 6 7.9613 -0.5284 2.3565 14 6 8.9071 -1.1053 3.4117 15 7 8.9348 -0.2204 4.5789 16 6 9.7170 -0.5347 5.6580 17 1 10.3138 -1.4347 5.6485 18 6 9.7436 0.3041 6.7638 19 7 9.0165 1.4013 6.7751 20 14 10.8100 -0.1250 8.2361 21 1 12.1585 0.4722 8.0614 22 1 10.1869 0.4127 9.4721 23 1 10.9327 -1.6008 8.3452 24 6 2.3964 -1.0571 -0.0005 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 2.1797 1.9071 0.6469 28 1 2.7180 1.3539 -0.9984 29 1 3.5895 0.9651 2.5569 30 1 2.2208 -0.1717 2.5067 31 1 3.8889 -0.7895 2.5695 32 1 5.3599 -1.5058 1.2928 33 1 8.0711 -1.7326 -1.5699 34 1 6.7526 -2.7533 -0.9475 35 1 6.3782 -1.3209 -1.9357 36 1 8.9354 -1.5357 0.7203 37 1 7.5812 -2.4400 1.4389 38 1 8.3121 0.4587 2.0554 39 1 6.9578 -0.4456 2.7740 40 1 8.5566 -2.0925 3.7129 41 1 9.9105 -1.1878 2.9941 42 1 8.3984 0.5878 4.5875 43 1 9.0349 1.9872 7.5480 44 1 2.7181 -1.3534 -0.9990 45 1 2.1798 -1.9074 0.6461 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485736310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:31 Heat of formation + Delta-G solvation = -5.314122 kcal Electronic energy + Delta-G solvation = -21917.313291 eV Core-core repulsion = 18742.560217 eV Total energy + Delta-G solvation = -3174.753074 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.81822 -38.43705 -36.55848 -34.82298 -32.74451 -31.87040 -30.70220 -29.35250 -27.87599 -26.19082 -25.68667 -23.99212 -22.80385 -20.90482 -20.69985 -19.81591 -17.99620 -17.06349 -16.97101 -16.43697 -15.41711 -14.97060 -14.78672 -14.62822 -14.46586 -14.25166 -13.76357 -13.58707 -13.43563 -13.02306 -12.80723 -12.56325 -12.39879 -12.25457 -12.10238 -11.98949 -11.63782 -11.29816 -11.13886 -11.11847 -10.85162 -10.79512 -10.47640 -10.44353 -10.39835 -10.00607 -9.71381 -9.67359 -9.33895 -9.07183 -8.85738 -6.90570 -5.75248 -3.03905 1.94984 2.57969 3.17407 3.44004 3.48776 3.50719 4.07609 4.21376 4.27894 4.56706 4.66784 4.72561 4.87836 5.05074 5.13511 5.16726 5.35245 5.42496 5.42881 5.50515 5.56742 5.58534 5.60562 5.63735 5.68828 5.71579 5.80360 5.92242 5.97445 6.02443 6.06772 6.13891 6.15417 6.22296 6.36878 6.41909 6.52318 6.64743 6.87626 6.90971 7.49186 7.70621 8.21004 8.43887 9.54627 10.13774 10.48133 11.47757 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019425 B = 0.003273 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.113848 B = 8553.464535 C = 9562.797911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.146 4.146 3 C -0.083 4.083 4 C -0.105 4.105 5 C -0.129 4.129 6 C 0.532 3.468 7 O -0.542 6.542 8 N -0.717 5.717 9 C 0.140 3.860 10 H 0.088 0.912 11 C -0.161 4.161 12 C -0.123 4.123 13 C -0.125 4.125 14 C 0.153 3.847 15 N -0.735 5.735 16 C -0.239 4.239 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.088 4.088 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.079 0.921 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.400 0.600 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.016 0.984 41 H 0.017 0.983 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.094 0.906 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.770 -6.620 -16.096 22.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C -0.120 4.120 4 C -0.108 4.108 5 C -0.186 4.186 6 C 0.318 3.682 7 O -0.419 6.419 8 N -0.369 5.369 9 C 0.035 3.965 10 H 0.106 0.894 11 C -0.220 4.220 12 C -0.161 4.161 13 C -0.163 4.163 14 C 0.025 3.975 15 N -0.379 5.379 16 C -0.371 4.371 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.125 4.125 25 H 0.124 0.876 26 H 0.123 0.877 27 H 0.098 0.902 28 H 0.123 0.877 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.235 0.765 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.034 0.966 41 H 0.035 0.965 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.112 0.888 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.386 -6.146 -16.599 22.810 hybrid contribution 0.349 -0.245 1.273 1.343 sum -14.037 -6.391 -15.326 21.744 Atomic orbital electron populations 1.22862 0.93365 1.02154 1.02632 1.22786 0.93829 0.98092 0.99880 1.22252 0.91942 0.95637 1.02139 1.21970 0.91308 1.00023 0.97485 1.21603 1.02938 1.03365 0.90697 1.20242 0.86436 0.79885 0.81676 1.90675 1.80009 1.39435 1.31787 1.46114 1.11032 1.37685 1.42037 1.21051 0.81080 1.01022 0.93319 0.89388 1.22167 1.02310 0.99822 0.97673 1.21846 0.99421 0.99450 0.95377 1.21728 1.00628 0.99001 0.94950 1.20646 0.95711 0.93522 0.87586 1.42386 1.54407 1.26461 1.14617 1.19242 1.18689 1.05350 0.93786 0.91233 1.24754 1.00501 0.97270 0.98598 1.69667 1.43928 1.14016 1.30650 0.86183 0.79925 0.77548 0.82508 1.21717 1.21756 1.20778 1.22281 0.93168 0.95884 1.01193 0.87578 0.87697 0.90249 0.87672 0.91182 0.91268 0.91571 0.76474 0.91591 0.92572 0.92418 0.90322 0.91469 0.91983 0.92050 0.96606 0.96529 0.78335 0.93528 0.88762 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 14.71 29.01 0.43 -0.89 16 2 C -0.15 -1.29 6.60 -100.29 -0.66 -1.96 16 3 C -0.08 -0.84 6.98 -27.02 -0.19 -1.03 16 4 C -0.10 -1.06 1.27 -154.87 -0.20 -1.25 16 5 C -0.13 -1.22 8.98 37.16 0.33 -0.89 16 6 C 0.53 6.69 6.90 -10.99 -0.08 6.62 16 7 O -0.54 -8.75 15.56 5.56 0.09 -8.66 16 8 N -0.72 -7.92 4.42 -53.81 -0.24 -8.16 16 9 C 0.14 1.62 2.58 -67.93 -0.17 1.44 16 10 H 0.09 1.22 7.58 -51.93 -0.39 0.82 16 11 C -0.16 -1.62 9.48 37.16 0.35 -1.26 16 12 C -0.12 -1.45 4.75 -26.73 -0.13 -1.58 16 13 C -0.13 -1.98 5.22 -26.73 -0.14 -2.12 16 14 C 0.15 3.08 6.26 -4.04 -0.03 3.05 16 15 N -0.73 -19.05 5.60 -59.91 -0.34 -19.39 16 16 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 18 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 19 N -0.93 -28.67 13.06 55.49 0.72 -27.94 16 20 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 C -0.09 -0.75 7.18 -27.01 -0.19 -0.94 16 25 H 0.11 0.72 8.06 -52.49 -0.42 0.29 16 26 H 0.10 0.67 8.06 -52.49 -0.42 0.24 16 27 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 28 H 0.11 1.20 7.42 -51.92 -0.39 0.81 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.59 7.70 -51.93 -0.40 0.19 16 31 H 0.07 0.59 7.04 -51.93 -0.37 0.22 16 32 H 0.40 3.73 7.50 -40.82 -0.31 3.43 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.98 7.75 -51.93 -0.40 0.57 16 40 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.38 10.46 7.67 -40.82 -0.31 10.15 16 43 H 0.25 7.54 8.31 -40.82 -0.34 7.21 16 44 H 0.09 0.81 8.09 -51.93 -0.42 0.39 16 45 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 LS Contribution 368.39 15.07 5.55 5.55 Total: -1.00 -32.90 368.39 -8.17 -41.07 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -8.02 Total: 8.29 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -0.92 Total: -8.36 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 0.15 Total: -55.49 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.09 Total: -8.66 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.90 -8.17 -41.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485736310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.757 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds